Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 N 1.46497 * 109.46947 * 184.89407 * 3 2 1 5 5 C 1.34526 * 126.68759 * 276.01642 * 4 3 2 6 6 O 1.21534 * 123.77393 * 359.95196 * 5 4 3 7 7 N 1.33803 * 112.45620 * 180.13134 * 5 4 3 8 8 C 1.46497 * 124.17495 * 179.86497 * 7 5 4 9 9 C 1.53002 * 109.47166 * 269.69631 * 8 7 5 10 10 C 1.53000 * 109.47054 * 180.02562 * 9 8 7 11 11 C 1.50702 * 109.46935 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99781 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99571 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00226 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99380 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47317 * 90.00143 * 15 13 11 17 17 H 1.48508 * 109.47066 * 209.99778 * 15 13 11 18 18 H 1.48503 * 109.47307 * 329.99593 * 15 13 11 19 19 C 1.34764 * 111.63888 * 359.59345 * 7 5 4 20 20 O 1.21245 * 127.15127 * 180.26812 * 19 7 5 21 21 C 1.47315 * 126.69127 * 95.71444 * 4 3 2 22 22 H 1.08998 * 110.59702 * 61.50371 * 21 4 3 23 23 C 1.52995 * 110.59776 * 298.55825 * 21 4 3 24 24 C 1.53001 * 109.47069 * 179.80616 * 23 21 4 25 25 H 1.08995 * 109.46938 * 300.00048 * 1 2 3 26 26 H 1.08999 * 109.47385 * 59.99617 * 1 2 3 27 27 H 1.09005 * 109.46907 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46627 * 240.00419 * 2 1 3 29 29 H 1.08999 * 109.47385 * 120.00383 * 2 1 3 30 30 H 1.09000 * 109.46892 * 64.89311 * 3 2 1 31 31 H 1.09005 * 109.46953 * 304.89074 * 3 2 1 32 32 H 1.09005 * 109.47069 * 149.70065 * 8 7 5 33 33 H 1.08996 * 109.47192 * 29.70209 * 8 7 5 34 34 H 1.08997 * 109.46903 * 59.99966 * 9 8 7 35 35 H 1.09002 * 109.46692 * 300.00417 * 9 8 7 36 36 H 1.08996 * 109.47006 * 300.00396 * 10 9 8 37 37 H 1.09001 * 109.46878 * 60.00321 * 10 9 8 38 38 H 0.97006 * 119.99740 * 180.02562 * 14 13 11 39 39 H 1.08995 * 109.47154 * 299.80586 * 23 21 4 40 40 H 1.08998 * 109.47004 * 59.80538 * 23 21 4 41 41 H 1.09001 * 109.47165 * 175.99372 * 24 23 21 42 42 H 1.09000 * 109.46905 * 295.99467 * 24 23 21 43 43 H 1.08998 * 109.47111 * 55.98946 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4441 -0.1178 5 6 4.3875 1.3015 0.8832 6 8 4.0739 1.1495 2.0475 7 7 5.6541 1.3495 0.4543 8 6 6.8238 1.2248 1.3274 9 6 7.2459 2.6120 1.8157 10 6 8.4680 2.4818 2.7270 11 6 8.8841 3.8482 3.2075 12 1 8.3324 4.7220 2.8938 13 6 9.9699 3.9827 4.0466 14 7 10.6419 2.9187 4.4281 15 14 10.4852 5.6764 4.6427 16 1 9.7801 5.9905 5.9113 17 1 11.9520 5.6946 4.8741 18 1 10.1334 6.6906 3.6165 19 6 5.7205 1.5208 -0.8807 20 8 6.7217 1.5979 -1.5602 21 6 4.2832 1.5961 -1.3564 22 1 4.0829 2.5617 -1.8206 23 6 3.9778 0.4557 -2.3296 24 6 4.7996 0.6413 -3.6067 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7500 1.9304 0.9306 31 1 1.6069 1.9810 -0.8430 32 1 7.6444 0.7697 0.7726 33 1 6.5730 0.5989 2.1837 34 1 6.4254 3.0671 2.3704 35 1 7.4967 3.2378 0.9592 36 1 8.2176 1.8558 3.5834 37 1 9.2884 2.0269 2.1719 38 1 11.4056 3.0134 5.0188 39 1 4.2364 -0.4964 -1.8662 40 1 2.9162 0.4632 -2.5763 41 1 4.6363 -0.2078 -4.2704 42 1 4.4905 1.5587 -4.1075 43 1 5.8575 0.7052 -3.3520 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431401062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -68.224481 kcal Electronic energy + Delta-G solvation = -22781.292530 eV Core-core repulsion = 19440.666885 eV Total energy + Delta-G solvation = -3340.625645 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.38356 -38.59056 -37.05217 -35.79268 -34.61283 -33.73021 -32.61350 -31.30458 -28.27010 -26.72201 -25.99407 -23.76948 -23.15109 -21.88223 -21.53101 -20.48818 -19.87325 -17.45589 -17.07901 -16.50969 -16.10688 -15.85033 -15.11713 -15.04734 -14.76608 -14.42370 -14.30430 -13.95119 -13.93321 -13.34744 -13.27117 -12.77304 -12.48695 -12.40640 -12.20951 -12.03384 -11.96315 -11.63909 -11.46024 -11.41571 -11.08128 -10.93053 -10.82610 -10.71390 -10.46127 -9.97260 -9.75762 -9.70668 -9.30445 -9.12582 -8.93587 -8.32927 -5.97953 -4.00096 1.70387 2.13907 2.94615 3.14044 3.34663 3.40352 3.44232 3.93493 4.35217 4.46619 4.48545 4.64391 4.70205 4.90914 4.91455 5.03413 5.08044 5.27587 5.34440 5.38002 5.39564 5.44750 5.61461 5.67382 5.69282 5.73620 5.75351 5.78190 5.91063 6.01114 6.04338 6.08244 6.38687 6.58389 6.77582 7.03517 7.25662 7.48412 7.66525 7.80051 8.00577 8.19238 8.43405 9.05660 9.63607 11.13525 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.003700 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.495364 B = 7566.698550 C = 8301.457236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.153 3.847 4 N -0.628 5.628 5 C 0.698 3.302 6 O -0.536 6.536 7 N -0.572 5.572 8 C 0.115 3.885 9 C -0.122 4.122 10 C 0.026 3.974 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.523 3.477 20 O -0.464 6.464 21 C 0.091 3.909 22 H 0.123 0.877 23 C -0.116 4.116 24 C -0.162 4.162 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 -6.411 -15.427 25.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.032 3.968 4 N -0.367 5.367 5 C 0.401 3.599 6 O -0.409 6.409 7 N -0.316 5.316 8 C -0.004 4.004 9 C -0.161 4.161 10 C -0.012 4.012 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.310 3.690 20 O -0.333 6.333 21 C -0.016 4.016 22 H 0.140 0.860 23 C -0.154 4.154 24 C -0.220 4.220 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.405 -6.505 -14.968 25.356 hybrid contribution 0.358 0.933 0.430 1.088 sum -19.047 -5.572 -14.538 24.601 Atomic orbital electron populations 1.21687 0.94805 1.02146 1.02015 1.22044 0.96298 0.97090 1.03192 1.21355 0.74651 0.97312 1.03499 1.47779 1.06005 1.76549 1.06328 1.15957 0.80787 0.77844 0.85334 1.90980 1.80372 1.53722 1.15830 1.46670 1.08574 1.66360 1.10003 1.22086 0.83799 1.01401 0.93123 1.21996 1.00839 0.93072 1.00167 1.19028 0.90822 0.97576 0.93771 1.21189 1.12927 0.93004 1.28641 0.92718 1.25012 0.96416 0.96728 0.96275 1.69961 1.19934 1.28478 1.35057 0.86575 0.77648 0.84528 0.79143 1.20637 1.21193 1.19892 1.20751 0.91056 0.75017 0.82211 1.90780 1.36190 1.46069 1.60301 1.22218 0.88916 1.02740 0.87744 0.85985 1.21679 1.01654 0.96825 0.95270 1.21881 1.01965 1.02043 0.96081 0.92321 0.92578 0.92331 0.91477 0.91099 0.89521 0.89640 0.89127 0.88964 0.92651 0.92893 0.96166 0.96234 0.92971 0.91053 0.90054 0.92016 0.92213 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.15 -1.11 6.26 -26.73 -0.17 -1.28 16 3 C 0.15 1.26 5.92 -4.04 -0.02 1.24 16 4 N -0.63 -7.11 2.74 -172.41 -0.47 -7.58 16 5 C 0.70 11.06 8.31 -88.01 -0.73 10.32 16 6 O -0.54 -10.29 17.22 5.34 0.09 -10.20 16 7 N -0.57 -9.31 2.60 -120.73 -0.31 -9.62 16 8 C 0.12 2.13 5.70 -4.04 -0.02 2.11 16 9 C -0.12 -2.68 5.48 -26.73 -0.15 -2.83 16 10 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 11 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 15 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.52 7.56 7.45 -10.56 -0.08 7.48 16 20 O -0.46 -7.73 15.82 5.59 0.09 -7.65 16 21 C 0.09 0.92 3.50 -68.21 -0.24 0.68 16 22 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.12 -0.89 5.02 -26.73 -0.13 -1.03 16 24 C -0.16 -1.26 9.79 37.16 0.36 -0.90 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.46 6.90 -51.93 -0.36 0.11 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.61 8.00 -51.93 -0.42 1.20 16 33 H 0.09 1.71 7.85 -51.93 -0.41 1.30 16 34 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.46 7.55 -51.93 -0.39 0.07 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.80 5.99 -51.93 -0.31 0.49 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -33.91 355.72 -8.24 -42.15 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -7.34 Total: -4.95 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.36 Total: 1.96 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.05 Total: -43.83 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.18 Total: -17.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.91 -8.24 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431401062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.076 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds