Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 N 1.46493 * 109.47220 * 175.92634 * 3 2 1 5 5 C 1.34530 * 126.69175 * 84.45932 * 4 3 2 6 6 O 1.21542 * 123.76532 * 359.96389 * 5 4 3 7 7 N 1.33793 * 112.46409 * 179.97438 * 5 4 3 8 8 C 1.46498 * 124.18036 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47112 * 90.02324 * 8 7 5 10 10 C 1.52996 * 109.47133 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47402 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99671 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99983 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00228 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99813 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46801 * 90.00175 * 15 13 11 17 17 H 1.48495 * 109.46907 * 210.00383 * 15 13 11 18 18 H 1.48501 * 109.46886 * 330.00625 * 15 13 11 19 19 C 1.34774 * 111.63754 * 359.97438 * 7 5 4 20 20 O 1.21237 * 127.14996 * 179.97438 * 19 7 5 21 21 C 1.47312 * 126.69461 * 264.14992 * 4 3 2 22 22 H 1.09005 * 110.59966 * 298.55935 * 21 4 3 23 23 C 1.53000 * 110.60066 * 61.50312 * 21 4 3 24 24 C 1.52998 * 109.47276 * 185.28880 * 23 21 4 25 25 H 1.09008 * 109.47008 * 59.99750 * 1 2 3 26 26 H 1.08998 * 109.47117 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47126 * 299.99680 * 1 2 3 28 28 H 1.09004 * 109.47066 * 240.00230 * 2 1 3 29 29 H 1.08998 * 109.46926 * 120.00133 * 2 1 3 30 30 H 1.08992 * 109.47559 * 295.93345 * 3 2 1 31 31 H 1.09004 * 109.46799 * 55.93133 * 3 2 1 32 32 H 1.09001 * 109.46919 * 210.01930 * 8 7 5 33 33 H 1.08997 * 109.46642 * 330.02149 * 8 7 5 34 34 H 1.09001 * 109.47045 * 300.00150 * 9 8 7 35 35 H 1.09002 * 109.47155 * 59.99731 * 9 8 7 36 36 H 1.09001 * 109.47085 * 299.99890 * 10 9 8 37 37 H 1.09002 * 109.47513 * 59.99714 * 10 9 8 38 38 H 0.97003 * 120.00288 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47553 * 305.29620 * 23 21 4 40 40 H 1.09008 * 109.46946 * 65.29393 * 23 21 4 41 41 H 1.08998 * 109.47164 * 174.05337 * 24 23 21 42 42 H 1.09002 * 109.47322 * 294.05818 * 24 23 21 43 43 H 1.08998 * 109.46950 * 54.05786 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5016 1.4437 0.0981 5 6 4.3755 1.3148 -0.9166 6 8 4.0461 1.1763 -2.0783 7 7 5.6476 1.3559 -0.5041 8 6 6.8055 1.2396 -1.3939 9 6 7.2191 2.6311 -1.8772 10 6 8.4280 2.5096 -2.8070 11 6 8.8351 3.8801 -3.2835 12 1 8.2861 4.7507 -2.9563 13 6 9.9082 4.0226 -4.1373 14 7 10.5764 2.9624 -4.5362 15 14 10.4123 5.7214 -4.7285 16 1 11.4034 6.2996 -3.7859 17 1 11.0179 5.6155 -6.0802 18 1 9.2163 6.5994 -4.7893 19 6 5.7320 1.5175 0.8313 20 8 6.7423 1.5909 1.4975 21 6 4.3013 1.5926 1.3263 22 1 4.1066 2.5567 1.7962 23 6 4.0101 0.4491 2.3002 24 6 4.7511 0.6981 3.6154 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7374 1.9349 -0.9241 31 1 1.6183 1.9769 0.8513 32 1 7.6341 0.7814 -0.8539 33 1 6.5437 0.6200 -2.2516 34 1 6.3905 3.0894 -2.4171 35 1 7.4808 3.2508 -1.0194 36 1 9.2568 2.0512 -2.2674 37 1 8.1660 1.8901 -3.6647 38 1 11.3312 3.0626 -5.1371 39 1 2.9382 0.3983 2.4910 40 1 4.3469 -0.4924 1.8662 41 1 4.4615 -0.0585 4.3445 42 1 5.8260 0.6438 3.4428 43 1 4.4937 1.6866 3.9959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431401065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -88.980127 kcal Electronic energy + Delta-G solvation = -22770.807748 eV Core-core repulsion = 19429.282071 eV Total energy + Delta-G solvation = -3341.525677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.52786 -39.79626 -38.11834 -37.17077 -35.93331 -34.99184 -33.93033 -32.80638 -29.60475 -28.00856 -26.99555 -25.42119 -24.16959 -22.84595 -22.42713 -22.18121 -21.05300 -18.80931 -18.33209 -18.10916 -17.44919 -16.92577 -16.54968 -16.17971 -15.96173 -15.74170 -15.56022 -15.34730 -14.90883 -14.40488 -14.27314 -14.08202 -13.81903 -13.38187 -13.35298 -13.07474 -12.92231 -12.78656 -12.72733 -12.56436 -12.53367 -12.23233 -12.11181 -11.92187 -11.73865 -11.65222 -11.44828 -11.40928 -11.01004 -10.75634 -10.59556 -10.00158 -8.23799 -6.35503 0.55472 1.03114 1.37607 1.39726 1.50868 1.88459 1.95570 2.38724 2.91656 3.09228 3.55339 3.71249 3.93124 3.98818 4.08388 4.10925 4.25049 4.29708 4.36073 4.38226 4.44235 4.46969 4.64431 4.69721 4.80811 4.91387 4.95281 5.00677 5.03026 5.07205 5.14557 5.23922 5.30103 5.37879 5.41897 5.45080 5.54845 5.61110 5.76624 6.09728 6.17656 6.32901 6.78729 6.98744 7.33432 8.88229 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.003694 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.371283 B = 7577.822063 C = 8310.625416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.145 3.855 4 N -0.611 5.611 5 C 0.690 3.310 6 O -0.580 6.580 7 N -0.581 5.581 8 C 0.126 3.874 9 C -0.103 4.103 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.930 5.930 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.265 1.265 19 C 0.515 3.485 20 O -0.491 6.491 21 C 0.102 3.898 22 H 0.156 0.844 23 C -0.109 4.109 24 C -0.155 4.155 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.001 0.999 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.116 0.884 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.791 -5.428 17.793 28.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.348 5.348 5 C 0.393 3.607 6 O -0.457 6.457 7 N -0.326 5.326 8 C 0.005 3.995 9 C -0.141 4.141 10 C -0.007 4.007 11 C -0.585 4.585 12 H 0.074 0.926 13 C -0.197 4.197 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.189 1.189 19 C 0.304 3.696 20 O -0.362 6.362 21 C -0.004 4.004 22 H 0.173 0.827 23 C -0.147 4.147 24 C -0.212 4.212 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.377 -5.526 17.377 28.097 hybrid contribution 1.005 0.556 -1.040 1.549 sum -20.372 -4.969 16.338 26.582 Atomic orbital electron populations 1.21663 0.93137 1.02594 1.02833 1.21987 0.97628 0.96235 1.02236 1.21740 0.72487 0.98302 1.04930 1.47973 1.06772 1.74820 1.05270 1.16181 0.81067 0.77824 0.85632 1.90947 1.80401 1.56075 1.18244 1.46669 1.08255 1.67034 1.10600 1.21675 0.85602 0.98961 0.93300 1.21677 0.98501 0.95091 0.98873 1.18891 0.92160 0.96232 0.93460 1.21602 1.14393 0.93907 1.28634 0.92557 1.25984 0.96217 1.01332 0.96171 1.70085 1.20947 1.31114 1.34882 0.85411 0.78645 0.79041 0.77744 1.19513 1.20377 1.18947 1.21572 0.92899 0.73851 0.81285 1.90776 1.36792 1.47039 1.61588 1.22495 0.84883 1.05478 0.87542 0.82682 1.21729 1.04039 0.94870 0.94068 1.21799 1.00059 1.03526 0.95858 0.92876 0.92128 0.90381 0.94328 0.90190 0.90766 0.85287 0.88778 0.89535 0.93598 0.93111 0.98095 0.98401 0.92566 0.86536 0.92202 0.90263 0.93911 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.14 -1.82 6.26 30.59 0.19 -1.63 16 3 C 0.14 1.98 5.81 86.38 0.50 2.49 16 4 N -0.61 -12.66 2.74 -817.80 -2.24 -14.90 16 5 C 0.69 21.98 8.31 179.44 1.49 23.47 16 6 O -0.58 -23.08 17.22 -3.85 -0.07 -23.14 16 7 N -0.58 -19.24 2.60 -773.11 -2.01 -21.25 16 8 C 0.13 4.86 5.70 86.38 0.49 5.35 16 9 C -0.10 -4.70 5.48 30.59 0.17 -4.53 16 10 C 0.03 1.68 4.97 29.85 0.15 1.83 16 11 C -0.55 -32.76 9.11 25.60 0.23 -32.52 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.00 0.06 5.46 84.65 0.46 0.52 16 14 N -0.93 -58.05 13.29 21.44 0.28 -57.77 16 15 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 C 0.52 14.63 7.48 87.94 0.66 15.29 16 20 O -0.49 -16.46 16.29 -2.90 -0.05 -16.51 16 21 C 0.10 1.79 3.45 44.37 0.15 1.94 16 22 H 0.16 1.85 8.14 -2.38 -0.02 1.83 16 23 C -0.11 -1.30 5.17 30.59 0.16 -1.14 16 24 C -0.15 -1.86 9.67 71.98 0.70 -1.17 16 25 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.82 6.73 -2.39 -0.02 0.80 16 30 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 31 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 3.53 8.00 -2.39 -0.02 3.51 16 33 H 0.09 3.41 7.86 -2.39 -0.02 3.39 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.12 0.68 7.11 -2.39 -0.02 0.66 16 40 H 0.06 0.90 8.12 -2.38 -0.02 0.88 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.04 0.79 6.71 -2.39 -0.02 0.77 16 43 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -76.93 356.19 4.98 -71.95 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 0.97 Total: 4.54 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.07 Total: 9.35 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -3.97 Total: -93.92 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.11 Total: -39.66 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.93 4.98 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431401065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.026 kcal (2) G-P(sol) polarization free energy of solvation -76.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds