Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47375 * 2 1 4 4 N 1.46497 * 109.47676 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00330 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99624 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00213 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.47122 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.46909 * 180.02562 * 8 7 5 10 10 O 1.21285 * 119.99998 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99855 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47299 * 184.79547 * 12 11 9 14 14 C 1.50704 * 115.54588 * 294.81766 * 13 12 11 15 15 H 1.07999 * 119.99785 * 95.20816 * 14 13 12 16 16 C 1.37877 * 119.99726 * 274.92551 * 14 13 12 17 17 N 1.31515 * 120.00084 * 355.41881 * 16 14 13 18 18 Si 1.86796 * 120.00102 * 175.42113 * 16 14 13 19 19 H 1.48504 * 109.47025 * 89.99775 * 18 16 14 20 20 H 1.48493 * 109.47332 * 210.00070 * 18 16 14 21 21 H 1.48499 * 109.47076 * 330.00113 * 18 16 14 22 22 C 1.53001 * 117.49754 * 80.48183 * 13 12 11 23 23 C 1.52994 * 117.50156 * 149.14359 * 13 12 11 24 24 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47458 * 300.00190 * 1 2 3 26 26 H 1.09006 * 109.46972 * 60.00018 * 1 2 3 27 27 H 1.09005 * 109.47561 * 240.00251 * 2 1 3 28 28 H 1.09000 * 109.47354 * 119.99754 * 2 1 3 29 29 H 1.09005 * 109.46571 * 59.99645 * 3 2 1 30 30 H 1.08996 * 109.47033 * 300.00520 * 3 2 1 31 31 H 0.97000 * 119.99390 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.46448 * 60.00371 * 7 5 4 33 33 H 1.08995 * 109.46980 * 300.00829 * 7 5 4 34 34 H 1.09003 * 109.46827 * 60.00709 * 8 7 5 35 35 H 1.09000 * 109.46857 * 300.00418 * 8 7 5 36 36 H 0.96999 * 119.99492 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47302 * 64.79393 * 12 11 9 38 38 H 1.09005 * 109.46853 * 304.79585 * 12 11 9 39 39 H 0.97004 * 120.00173 * 185.00091 * 17 16 14 40 40 H 1.09003 * 117.49648 * 214.99946 * 22 13 12 41 41 H 1.08991 * 117.50066 * 0.03054 * 22 13 12 42 42 H 1.08996 * 117.49909 * 359.97438 * 23 13 12 43 43 H 1.09006 * 117.50020 * 144.97002 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1789 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6859 2.6098 0.0014 8 6 6.1959 4.0523 0.0013 9 6 7.7029 4.0523 0.0019 10 8 8.3093 3.0019 0.0028 11 7 8.3767 5.2195 0.0024 12 6 9.8417 5.2195 0.0024 13 6 10.3517 6.6569 0.1236 14 6 10.0303 7.5608 -1.0386 15 1 9.1581 8.1966 -1.0031 16 6 10.8530 7.5801 -2.1449 17 7 11.9654 6.8786 -2.1495 18 14 10.3876 8.6027 -3.6372 19 1 10.9562 9.9676 -3.4989 20 1 10.9280 7.9632 -4.8636 21 1 8.9084 8.6904 -3.7354 22 6 10.3756 7.2826 1.5196 23 6 11.6856 6.8752 0.8405 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9900 0.6025 0.0006 32 1 6.0499 2.0953 -0.8879 33 1 6.0485 2.0966 0.8920 34 1 5.8319 4.5664 0.8909 35 1 5.8331 4.5658 -0.8891 36 1 7.8917 6.0595 0.0020 37 1 10.2051 4.7823 -0.9276 38 1 10.2050 4.6327 0.8461 39 1 12.5798 6.9484 -2.8969 40 1 10.1591 8.3481 1.5974 41 1 10.0285 6.6702 2.3517 42 1 12.1996 5.9948 1.2262 43 1 12.3310 7.6722 0.4712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435229825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = -78.409212 kcal Electronic energy + Delta-G solvation = -21499.623081 eV Core-core repulsion = 18158.555793 eV Total energy + Delta-G solvation = -3341.067288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.97364 -38.93045 -36.70020 -36.07667 -33.27629 -33.08219 -32.41185 -31.95052 -27.60683 -26.30766 -25.35775 -23.86246 -22.00013 -21.16105 -20.41513 -19.66218 -19.16270 -17.43929 -16.44069 -16.28751 -16.18558 -15.73729 -15.55223 -14.85623 -14.69464 -14.45261 -13.99317 -13.70129 -13.31376 -13.18718 -12.87094 -12.60230 -12.50503 -12.37865 -11.91100 -11.75783 -11.56678 -11.53270 -11.30415 -11.06591 -10.99330 -10.92826 -10.52696 -10.23343 -9.94456 -9.60205 -9.29555 -9.28197 -9.04208 -8.49150 -8.26045 -8.08227 -6.07347 -4.17067 2.55412 2.95490 3.20874 3.26163 3.34225 3.36475 3.93053 4.35706 4.42405 4.54991 4.66717 4.80541 5.03668 5.14085 5.20242 5.21828 5.22344 5.29194 5.39034 5.49684 5.59461 5.69985 5.73646 5.79547 5.92543 6.01427 6.04828 6.23100 6.34486 6.47840 6.56918 6.71424 6.87891 7.12250 7.27592 7.29563 7.40036 7.53687 7.81545 8.08577 8.29809 8.34366 8.83563 8.87886 9.50126 10.99757 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024668 B = 0.002829 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.802204 B = 9893.887504 C =10470.729091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.737 5.737 5 C 0.513 3.487 6 O -0.541 6.541 7 C -0.122 4.122 8 C -0.125 4.125 9 C 0.503 3.497 10 O -0.564 6.564 11 N -0.702 5.702 12 C 0.163 3.837 13 C 0.023 3.977 14 C -0.499 4.499 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.211 4.211 23 C -0.142 4.142 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.402 0.598 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.403 0.597 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 -11.866 4.665 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.389 5.389 5 C 0.300 3.700 6 O -0.418 6.418 7 C -0.163 4.163 8 C -0.166 4.166 9 C 0.289 3.711 10 O -0.445 6.445 11 N -0.350 5.350 12 C 0.040 3.960 13 C 0.022 3.978 14 C -0.537 4.537 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.248 4.248 23 C -0.181 4.181 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.236 0.764 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.237 0.763 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.901 -11.925 4.512 21.171 hybrid contribution -0.056 0.560 -0.891 1.054 sum -16.957 -11.365 3.622 20.732 Atomic orbital electron populations 1.21680 0.94577 1.02142 1.02377 1.21744 0.96989 0.95915 1.02793 1.21391 0.79830 0.97039 1.02438 1.46052 1.07271 1.08995 1.76619 1.20890 0.90539 0.83381 0.75148 1.90709 1.70706 1.31264 1.49079 1.21354 0.90157 0.98898 1.05853 1.21355 0.92629 0.96997 1.05608 1.20499 0.89562 0.84251 0.76789 1.90644 1.70672 1.31476 1.51666 1.46000 1.08736 1.07932 1.72374 1.20996 0.77402 0.97452 1.00198 1.19056 0.97296 0.91455 0.89978 1.20359 1.10987 1.23178 0.99171 0.92151 1.24996 0.95005 0.94975 0.98183 1.69993 1.09876 1.39646 1.31616 0.86620 0.78944 0.80085 0.82559 1.20699 1.21193 1.19725 1.23016 1.04730 0.99953 0.97095 1.22465 0.90811 1.01444 1.03344 0.92192 0.92333 0.92325 0.91250 0.91269 0.91557 0.91536 0.76409 0.88047 0.88132 0.88545 0.88362 0.76326 0.91478 0.94194 0.92892 0.90379 0.91725 0.91844 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.73 6.05 -26.73 -0.16 -0.89 16 3 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 4 N -0.74 -6.47 5.56 -60.29 -0.33 -6.80 16 5 C 0.51 6.18 7.83 -10.99 -0.09 6.10 16 6 O -0.54 -8.49 15.98 5.56 0.09 -8.41 16 7 C -0.12 -1.45 4.99 -27.88 -0.14 -1.59 16 8 C -0.13 -1.75 4.99 -27.88 -0.14 -1.89 16 9 C 0.50 9.06 7.83 -10.98 -0.09 8.97 16 10 O -0.56 -11.81 15.98 5.55 0.09 -11.72 16 11 N -0.70 -13.53 5.48 -60.29 -0.33 -13.86 16 12 C 0.16 3.67 5.50 -4.04 -0.02 3.65 16 13 C 0.02 0.54 1.47 -155.66 -0.23 0.31 16 14 C -0.50 -12.87 8.59 -34.44 -0.30 -13.17 16 15 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 16 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 17 N -0.88 -24.30 12.65 55.43 0.70 -23.60 16 18 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.68 16 23 C -0.14 -3.28 9.14 -26.70 -0.24 -3.53 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 2.47 8.47 -40.82 -0.35 2.12 16 32 H 0.10 1.17 8.10 -51.93 -0.42 0.74 16 33 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.10 1.36 8.10 -51.93 -0.42 0.94 16 36 H 0.40 7.21 8.33 -40.82 -0.34 6.87 16 37 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 39 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -31.51 365.01 -8.14 -39.65 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.41 Total: 7.93 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.42 Total: -4.34 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.04 Total: -44.26 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.13 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.51 -8.14 -39.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435229825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.759 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds