Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00189 * 2 1 4 4 H 1.09004 * 109.48607 * 359.97438 * 3 2 1 5 5 O 1.42902 * 109.48429 * 239.94487 * 3 2 1 6 6 C 1.42896 * 114.09628 * 178.85975 * 5 3 2 7 7 C 1.53090 * 109.42038 * 61.15837 * 6 5 3 8 8 C 1.53186 * 109.16170 * 302.39339 * 7 6 5 9 9 C 1.53095 * 109.48063 * 119.99878 * 3 2 1 10 10 H 1.09007 * 109.57179 * 57.65478 * 9 3 2 11 11 N 1.46500 * 109.52412 * 297.50621 * 9 3 2 12 12 C 1.34775 * 120.00474 * 155.31735 * 11 9 3 13 13 O 1.21589 * 119.99889 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 9 15 15 C 1.46504 * 119.99531 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47127 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47055 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00290 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99506 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00308 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47155 * 59.99584 * 22 20 18 24 24 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46879 * 299.99587 * 22 20 18 26 26 H 1.07997 * 119.99960 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99931 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.00277 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.48181 * 301.17115 * 6 5 3 30 30 H 1.09006 * 109.49216 * 181.14698 * 6 5 3 31 31 H 1.09001 * 109.52744 * 182.48385 * 7 6 5 32 32 H 1.09002 * 109.52108 * 62.29311 * 7 6 5 33 33 H 1.09008 * 109.53872 * 297.10940 * 8 7 6 34 34 H 1.08999 * 109.61371 * 176.88914 * 8 7 6 35 35 H 0.96998 * 119.99761 * 335.30620 * 11 9 3 36 36 H 0.96992 * 120.00503 * 359.97438 * 14 12 11 37 37 H 1.09001 * 109.46891 * 60.00097 * 15 14 12 38 38 H 1.08993 * 109.47378 * 299.99469 * 15 14 12 39 39 H 1.09001 * 109.46801 * 300.00349 * 16 15 14 40 40 H 1.09001 * 109.46998 * 59.99945 * 16 15 14 41 41 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 42 42 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 43 43 H 0.96999 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3554 2.1338 -0.0005 5 8 2.8862 1.3805 -1.1660 6 6 3.6287 2.5962 -1.2786 7 6 4.5718 2.7294 -0.0801 8 6 3.7511 2.6875 1.2127 9 6 2.9437 1.3864 1.2500 10 1 3.6248 0.5356 1.2730 11 7 2.0982 1.3689 2.4462 12 6 2.6007 0.9387 3.6204 13 8 3.7556 0.5645 3.6869 14 7 1.8229 0.9231 4.7210 15 6 2.3690 0.4549 5.9973 16 6 1.2876 0.5394 7.0764 17 6 1.8581 0.0511 8.4094 18 6 0.7928 0.1337 9.4721 19 1 -0.1924 0.4986 9.2219 20 6 1.0762 -0.2554 10.7641 21 7 2.2762 -0.6992 11.0689 22 14 -0.2440 -0.1522 12.0816 23 1 -1.3969 -1.0046 11.6949 24 1 0.3097 -0.6264 13.3754 25 1 -0.6945 1.2559 12.2217 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 2.9411 3.4418 -1.2958 30 1 4.2113 2.5826 -2.1998 31 1 5.1071 3.6770 -0.1412 32 1 5.2858 1.9057 -0.0851 33 1 3.0715 3.5393 1.2409 34 1 4.4202 2.7262 2.0723 35 1 1.1768 1.6672 2.3931 36 1 0.9016 1.2219 4.6681 37 1 3.2153 1.0803 6.2816 38 1 2.6994 -0.5786 5.8938 39 1 0.9575 1.5731 7.1797 40 1 0.4411 -0.0856 6.7922 41 1 2.1885 -0.9825 8.3063 42 1 2.7044 0.6765 8.6934 43 1 2.4755 -0.9733 11.9778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454457467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -76.372992 kcal Electronic energy + Delta-G solvation = -21898.152568 eV Core-core repulsion = 18557.173577 eV Total energy + Delta-G solvation = -3340.978991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51358 -39.19367 -35.78526 -34.99172 -34.36444 -33.34617 -32.52111 -31.10664 -29.33736 -26.56783 -25.35555 -23.88073 -22.77850 -20.86570 -20.79687 -20.46480 -20.19515 -18.18656 -17.11694 -16.63473 -16.27227 -15.79418 -15.50072 -15.03192 -14.65970 -14.51666 -14.38160 -14.31232 -13.83106 -13.72891 -13.38729 -12.87108 -12.27522 -12.21074 -11.80423 -11.80381 -11.75365 -11.39430 -11.26136 -10.95661 -10.87570 -10.71233 -10.61779 -10.13135 -10.08690 -9.84960 -9.69423 -9.43147 -9.15746 -9.13049 -8.60513 -8.36522 -6.01272 -4.04468 1.81431 2.72007 3.32053 3.36615 3.36868 3.38686 3.56345 4.27416 4.40153 4.45641 4.47288 4.56030 4.63384 4.67747 4.80798 5.01702 5.14272 5.25363 5.34335 5.43235 5.48729 5.58939 5.62940 5.71399 5.82370 5.88808 5.96711 6.19162 6.24497 6.31303 6.39435 6.53923 6.63198 6.79412 6.84125 7.03034 7.07140 7.64167 7.77396 7.97623 8.15166 8.38483 8.76087 9.02075 9.59547 11.10030 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034310 B = 0.002593 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.902848 B =10794.799920 C =11285.373830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.065 0.935 5 O -0.368 6.368 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.136 4.136 9 C 0.142 3.858 10 H 0.098 0.902 11 N -0.742 5.742 12 C 0.703 3.297 13 O -0.591 6.591 14 N -0.741 5.741 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 7.290 -25.891 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.057 3.943 4 H 0.083 0.917 5 O -0.287 6.287 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.175 4.175 9 C 0.036 3.964 10 H 0.116 0.884 11 N -0.398 5.398 12 C 0.402 3.598 13 O -0.469 6.469 14 N -0.395 5.395 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.116 0.884 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.226 0.774 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.428 6.703 -25.792 26.652 hybrid contribution -1.519 0.564 1.026 1.918 sum -1.947 7.267 -24.766 25.884 Atomic orbital electron populations 1.23889 0.95479 1.02356 0.99225 1.22628 0.95588 0.97408 1.00418 1.21337 0.91338 0.96358 0.85283 0.91722 1.88015 1.60067 1.39201 1.41369 1.22665 0.93715 0.86781 0.98718 1.22204 0.99031 1.03369 0.94615 1.22065 0.99426 0.97356 0.98610 1.21297 0.92508 0.99461 0.83174 0.88442 1.44979 1.15332 1.71596 1.07937 1.15972 0.85027 0.78525 0.80244 1.90919 1.16600 1.54570 1.84824 1.45380 1.14930 1.70269 1.08946 1.21510 0.97549 0.99356 0.80384 1.21888 0.96819 1.00964 0.96130 1.19020 0.96435 0.96709 0.89175 1.21168 0.97755 1.43381 0.93824 0.92720 1.25032 0.95445 0.95280 0.98707 1.69957 1.20017 1.43574 1.19735 0.86641 0.81894 0.78402 0.80942 1.20251 1.21269 1.20257 0.88436 0.87606 0.86520 0.93033 0.88437 0.90432 0.90552 0.91731 0.90269 0.77363 0.77362 0.91990 0.91959 0.92806 0.92776 0.96247 0.96262 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 14.32 29.02 0.42 -0.83 16 2 C -0.14 -1.26 8.82 -36.03 -0.32 -1.57 16 3 C 0.12 1.02 2.58 -27.83 -0.07 0.94 16 4 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 5 O -0.37 -3.56 10.39 -35.23 -0.37 -3.93 16 6 C 0.06 0.41 6.84 37.20 0.25 0.67 16 7 C -0.15 -1.19 6.14 -26.59 -0.16 -1.35 16 8 C -0.14 -1.30 5.60 -26.55 -0.15 -1.45 16 9 C 0.14 1.49 2.06 -67.79 -0.14 1.35 16 10 H 0.10 1.29 7.58 -51.92 -0.39 0.90 16 11 N -0.74 -8.06 4.74 -58.54 -0.28 -8.34 16 12 C 0.70 10.69 8.53 -86.92 -0.74 9.95 16 13 O -0.59 -11.58 16.01 5.29 0.08 -11.49 16 14 N -0.74 -10.73 5.56 -65.22 -0.36 -11.10 16 15 C 0.14 2.42 5.67 -4.04 -0.02 2.40 16 16 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 17 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.10 0.57 7.83 -52.49 -0.41 0.16 16 27 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.39 3.18 8.62 -40.82 -0.35 2.83 16 36 H 0.39 4.51 8.49 -40.82 -0.35 4.16 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -33.28 356.39 -8.83 -42.11 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.37 Total: 2.39 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.63 Total: -5.31 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.10 Total: -45.62 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.28 Total: -15.42 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.28 -8.83 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454457467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.265 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds