Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46918 * 2 1 4 4 C 1.50700 * 109.47335 * 239.99762 * 2 1 3 5 5 H 1.07999 * 120.00156 * 239.99667 * 4 2 1 6 6 C 1.37881 * 119.99856 * 59.99871 * 4 2 1 7 7 N 1.31512 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00171 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47234 * 89.99715 * 8 6 4 10 10 H 1.48493 * 109.47334 * 210.00157 * 8 6 4 11 11 H 1.48502 * 109.46784 * 330.00142 * 8 6 4 12 12 C 1.53002 * 109.47339 * 119.99886 * 2 1 3 13 13 N 1.46504 * 109.46677 * 299.99942 * 12 2 1 14 14 C 1.34783 * 119.99634 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99762 * 180.02562 * 14 13 12 17 17 N 1.46501 * 109.46760 * 180.02562 * 16 14 13 18 18 C 1.45761 * 117.94292 * 270.01768 * 17 16 14 19 19 C 1.52922 * 110.48247 * 160.92674 * 18 17 16 20 20 C 1.53171 * 108.62996 * 50.75086 * 19 18 17 21 21 C 1.53068 * 108.51490 * 292.41118 * 20 19 18 22 22 C 1.33347 * 117.95032 * 89.99985 * 17 16 14 23 23 O 1.21279 * 118.24209 * 2.22334 * 22 17 16 24 24 H 1.09003 * 109.47156 * 299.99970 * 1 2 3 25 25 H 1.08998 * 109.47557 * 60.00304 * 1 2 3 26 26 H 1.09001 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46713 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46804 * 299.99470 * 3 2 1 29 29 H 1.08991 * 109.46829 * 60.00021 * 3 2 1 30 30 H 0.97004 * 120.00551 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.47164 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.46874 * 60.00002 * 12 2 1 33 33 H 0.96996 * 120.00438 * 0.02562 * 13 12 2 34 34 H 1.09000 * 109.47119 * 60.00230 * 16 14 13 35 35 H 1.09001 * 109.46895 * 299.99902 * 16 14 13 36 36 H 1.08995 * 109.30192 * 281.23610 * 18 17 16 37 37 H 1.09001 * 109.30141 * 40.82582 * 18 17 16 38 38 H 1.09003 * 109.60066 * 170.50695 * 19 18 17 39 39 H 1.08997 * 109.60766 * 290.83137 * 19 18 17 40 40 H 1.08998 * 109.57211 * 172.68289 * 20 19 18 41 41 H 1.09005 * 109.69025 * 52.21233 * 20 19 18 42 42 H 1.09002 * 109.40169 * 288.84451 * 21 20 19 43 43 H 1.09003 * 109.40095 * 169.01967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7121 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4912 3.6696 15 8 2.5734 -1.4778 3.7809 16 6 1.3741 0.2189 4.9000 17 7 1.8626 -0.4716 6.0961 18 6 1.0394 -1.5377 6.6534 19 6 1.8748 -2.4380 7.5645 20 6 2.6303 -1.5569 8.5639 21 6 3.6724 -0.7375 7.7986 22 6 3.0324 -0.0857 6.6066 23 8 3.6104 0.8416 6.0803 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 0.7094 1.1618 -3.4845 31 1 3.1300 -0.7208 1.2495 32 1 1.6767 -1.7488 1.2492 33 1 0.9937 0.7579 2.3564 34 1 0.2841 0.2188 4.8996 35 1 1.7374 1.2466 4.9003 36 1 0.2240 -1.0998 7.2291 37 1 0.6264 -2.1359 5.8412 38 1 1.2192 -3.1228 8.1026 39 1 2.5850 -3.0072 6.9648 40 1 3.1279 -2.1859 9.3020 41 1 1.9313 -0.8864 9.0640 42 1 4.4754 -1.3945 7.4645 43 1 4.0823 0.0304 8.4547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457984880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = -83.253611 kcal Electronic energy + Delta-G solvation = -22893.960613 eV Core-core repulsion = 19552.683255 eV Total energy + Delta-G solvation = -3341.277357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71317 -38.88176 -36.57746 -36.29351 -34.08847 -33.25432 -30.92805 -29.85216 -28.13372 -25.71360 -25.51738 -24.86372 -24.26131 -22.45897 -20.24951 -18.88598 -18.61832 -17.22082 -16.78171 -16.58175 -15.84348 -15.43842 -14.89625 -14.75310 -14.55485 -14.33044 -14.12400 -13.62399 -13.33597 -13.09002 -12.99640 -12.82765 -12.17447 -12.05075 -11.79721 -11.48313 -11.34496 -11.22259 -11.19322 -11.17608 -10.85071 -10.68959 -10.37274 -10.20034 -9.77632 -9.70293 -9.62216 -9.33700 -8.80526 -8.62646 -8.44172 -8.29538 -6.01322 -4.11357 2.58195 2.87182 3.05912 3.28786 3.35781 3.39996 3.86777 4.39688 4.41215 4.49362 4.52460 4.59031 5.06959 5.11873 5.16997 5.25378 5.27412 5.30975 5.47023 5.47572 5.59217 5.62671 5.69465 5.95507 6.17678 6.28171 6.34391 6.52276 6.79019 6.84104 6.95006 7.03475 7.05114 7.36822 7.38438 7.56955 7.70221 8.02231 8.04453 8.13354 8.18783 8.39630 8.71398 8.89387 9.54375 11.00077 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036790 B = 0.003377 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.888619 B = 8288.373761 C = 8363.078069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.134 3.866 13 N -0.715 5.715 14 C 0.490 3.510 15 O -0.546 6.546 16 C 0.085 3.915 17 N -0.584 5.584 18 C 0.116 3.884 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.132 4.132 22 C 0.521 3.479 23 O -0.553 6.553 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.398 0.602 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -2.441 20.436 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.274 3.726 15 O -0.424 6.424 16 C -0.042 4.042 17 N -0.316 5.316 18 C -0.007 4.007 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.171 4.171 22 C 0.310 3.690 23 O -0.431 6.431 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.133 -2.570 20.108 20.383 hybrid contribution -0.004 -0.194 -1.035 1.053 sum -2.138 -2.764 19.073 19.390 Atomic orbital electron populations 1.21824 0.97756 0.99089 1.00088 1.18360 0.92783 0.92811 0.90548 1.21828 0.98658 0.98289 1.00090 1.20992 1.31449 1.12083 0.89928 0.92489 1.24880 0.94880 0.94912 0.98843 1.69803 1.36757 1.22700 1.23212 0.86568 0.79325 0.79379 0.82590 1.20725 1.21252 1.19908 1.21697 0.98141 0.95630 0.83420 1.46278 1.52652 1.31781 1.05942 1.20951 0.81194 0.85224 0.85200 1.90649 1.38211 1.26718 1.86863 1.21399 1.00261 0.98655 0.83865 1.46848 1.21239 1.36279 1.27227 1.21414 0.93102 0.88563 0.97598 1.21844 1.00052 0.97980 0.97540 1.21626 0.97894 0.98577 0.97904 1.21632 0.99353 1.00961 0.95192 1.20121 0.80206 0.83339 0.85356 1.90725 1.60750 1.29838 1.61769 0.97493 0.89589 0.95510 0.95439 0.89596 0.97427 0.93011 0.92851 0.92847 0.76719 0.87781 0.86731 0.91600 0.90438 0.89815 0.90441 0.90602 0.91157 0.88165 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.51 -13.44 8.01 -34.44 -0.28 -13.71 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.78 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.91 4.50 -4.04 -0.02 2.89 16 13 N -0.72 -12.98 4.96 -60.29 -0.30 -13.28 16 14 C 0.49 8.72 7.88 -10.98 -0.09 8.63 16 15 O -0.55 -11.70 16.42 5.56 0.09 -11.61 16 16 C 0.09 1.13 5.70 -5.19 -0.03 1.10 16 17 N -0.58 -7.45 2.30 -176.33 -0.41 -7.85 16 18 C 0.12 1.07 6.32 -4.48 -0.03 1.04 16 19 C -0.14 -1.04 6.02 -26.68 -0.16 -1.20 16 20 C -0.12 -0.84 6.02 -26.61 -0.16 -1.00 16 21 C -0.13 -1.29 6.04 -28.10 -0.17 -1.46 16 22 C 0.52 7.44 7.44 -11.87 -0.09 7.35 16 23 O -0.55 -10.24 16.18 5.56 0.09 -10.15 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.18 6.07 -51.93 -0.32 1.86 16 29 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 30 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.40 6.42 6.16 -40.82 -0.25 6.17 16 34 H 0.10 1.00 8.02 -51.93 -0.42 0.59 16 35 H 0.11 1.57 7.13 -51.93 -0.37 1.20 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.73 8.13 -51.93 -0.42 0.30 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -32.56 340.67 -7.47 -40.04 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.99 Total: 3.89 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.59 Total: 1.19 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.19 Total: -44.39 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.18 Total: -21.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.56 -7.47 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457984880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.218 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds