Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52989 * 109.47326 * 2 1 4 4 N 1.46501 * 109.47309 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99746 * 270.48750 * 4 3 2 6 6 H 1.08001 * 120.00016 * 325.55638 * 5 4 3 7 7 C 1.38813 * 119.99765 * 145.56086 * 5 4 3 8 8 N 1.31616 * 120.00085 * 337.11316 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 157.12231 * 7 5 4 10 10 H 1.48499 * 109.47189 * 59.99343 * 9 7 5 11 11 H 1.48498 * 109.46855 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46825 * 299.99300 * 9 7 5 13 13 C 1.46497 * 120.00253 * 90.48686 * 4 3 2 14 14 N 1.46496 * 109.47529 * 89.99759 * 13 4 3 15 15 C 1.47402 * 125.59861 * 270.05787 * 14 13 4 16 16 C 1.53055 * 103.29474 * 179.97438 * 15 14 13 17 17 C 1.53171 * 111.48451 * 238.32684 * 16 15 14 18 18 C 1.54134 * 106.31248 * 216.79069 * 17 16 15 19 19 C 1.54354 * 106.56475 * 359.24833 * 18 17 16 20 20 C 1.53797 * 111.12697 * 120.99039 * 16 15 14 21 21 O 1.44532 * 105.15750 * 359.97438 * 16 15 14 22 22 C 1.34175 * 108.96503 * 0.02562 * 21 16 15 23 23 O 1.21511 * 123.11041 * 180.02562 * 22 21 16 24 24 H 1.08994 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47004 * 300.00257 * 1 2 3 26 26 H 1.08996 * 109.47042 * 59.99952 * 1 2 3 27 27 H 1.09001 * 109.47004 * 239.99742 * 2 1 3 28 28 H 1.09006 * 109.46632 * 119.99675 * 2 1 3 29 29 H 1.08998 * 109.47615 * 59.99515 * 3 2 1 30 30 H 1.09006 * 109.47184 * 299.99972 * 3 2 1 31 31 H 0.96993 * 120.00041 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.46936 * 329.99830 * 13 4 3 33 33 H 1.08998 * 109.47300 * 210.00704 * 13 4 3 34 34 H 1.08994 * 110.66078 * 61.52296 * 15 14 13 35 35 H 1.09004 * 110.64992 * 298.42518 * 15 14 13 36 36 H 1.09002 * 110.08782 * 97.58478 * 17 16 15 37 37 H 1.09000 * 110.09048 * 336.00611 * 17 16 15 38 38 H 1.09005 * 110.03580 * 118.51975 * 18 17 16 39 39 H 1.08994 * 110.03950 * 239.96385 * 18 17 16 40 40 H 1.08997 * 110.46309 * 142.11288 * 19 18 17 41 41 H 1.09006 * 110.45774 * 264.67963 * 19 18 17 42 42 H 1.09000 * 110.77434 * 39.36071 * 20 16 15 43 43 H 1.08998 * 110.92889 * 276.02583 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4321 1.1850 6 1 3.7926 1.9537 2.0430 7 6 5.3959 0.7513 1.2840 8 7 5.6704 -0.2263 0.4466 9 14 6.6288 1.2226 2.6058 10 1 6.0091 1.0514 3.9444 11 1 7.8259 0.3503 2.4997 12 1 7.0313 2.6405 2.4244 13 6 4.2371 1.4533 -1.2695 14 7 4.4811 2.8381 -1.6807 15 6 3.5853 3.6547 -2.5194 16 6 4.3242 4.9907 -2.6265 17 6 3.4716 6.1475 -2.0963 18 6 3.7669 7.3556 -3.0067 19 6 4.8066 6.8812 -4.0442 20 6 4.6250 5.3418 -4.0933 21 8 5.5368 4.8144 -1.8599 22 6 5.5565 3.5716 -1.3547 23 8 6.4638 3.1496 -0.6653 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 6.5127 -0.7022 0.5159 32 1 3.6477 0.9460 -2.0334 33 1 5.1895 0.9383 -1.1441 34 1 2.6188 3.7878 -2.0333 35 1 3.4627 3.2030 -3.5038 36 1 3.7501 6.3770 -1.0677 37 1 2.4142 5.8882 -2.1494 38 1 2.8548 7.6749 -3.5111 39 1 4.1751 8.1766 -2.4172 40 1 4.5994 7.3207 -5.0198 41 1 5.8148 7.1357 -3.7170 42 1 3.7864 5.0718 -4.7352 43 1 5.5402 4.8552 -4.4304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494639134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = -59.116533 kcal Electronic energy + Delta-G solvation = -23930.216055 eV Core-core repulsion = 20589.985360 eV Total energy + Delta-G solvation = -3340.230695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13694 -37.65727 -36.30926 -35.31572 -33.99895 -32.70994 -30.54479 -29.22075 -28.95880 -26.05091 -25.53064 -24.09611 -22.20555 -21.29754 -20.66541 -20.41716 -19.24671 -17.08611 -16.21096 -16.07556 -15.85899 -15.37637 -14.82002 -14.38739 -14.18865 -14.03640 -13.80269 -13.51913 -13.12524 -13.05777 -12.97934 -12.57111 -11.90586 -11.71105 -11.55497 -11.43947 -11.35352 -11.19383 -11.05756 -10.94315 -10.71987 -10.59556 -10.54277 -10.32528 -10.07920 -10.01882 -9.92396 -9.75966 -9.52562 -8.43247 -8.04827 -6.80237 -5.84188 -3.34759 3.31397 3.54169 3.56861 3.70165 3.71046 4.07959 4.38030 4.43278 4.61182 4.61935 5.02260 5.22095 5.30641 5.36134 5.42688 5.45333 5.52205 5.62947 5.67811 5.74184 5.76515 5.78343 5.80591 5.87356 5.91314 6.05519 6.08708 6.10488 6.18206 6.28077 6.44197 6.50448 6.60013 6.62814 6.97182 7.18110 7.36012 7.61164 7.85310 8.31328 8.50068 9.10210 9.13186 9.79120 10.28654 11.22060 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.006700 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.044687 B = 4177.876223 C = 5429.578112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.144 3.856 4 N -0.568 5.568 5 C -0.275 4.275 6 H 0.059 0.941 7 C 0.040 3.960 8 N -0.886 5.886 9 Si 0.903 3.097 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.274 1.274 13 C 0.365 3.635 14 N -0.625 5.625 15 C 0.074 3.926 16 C 0.091 3.909 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.122 4.122 21 O -0.333 6.333 22 C 0.632 3.368 23 O -0.508 6.508 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.258 0.742 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 9.671 -10.518 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.018 3.982 4 N -0.288 5.288 5 C -0.404 4.404 6 H 0.077 0.923 7 C -0.162 4.162 8 N -0.528 5.528 9 Si 0.732 3.268 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.200 1.200 13 C 0.160 3.840 14 N -0.379 5.379 15 C -0.051 4.051 16 C 0.052 3.948 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.160 4.160 21 O -0.245 6.245 22 C 0.384 3.616 23 O -0.391 6.391 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.631 9.433 -10.085 15.777 hybrid contribution 0.430 0.206 0.636 0.795 sum -7.201 9.638 -9.449 15.298 Atomic orbital electron populations 1.21752 0.97665 1.00425 1.00645 1.22052 0.93099 1.00368 1.02312 1.21022 0.85287 0.93729 0.98176 1.44467 0.99747 1.81496 1.03100 1.18855 1.03870 1.27625 0.90024 0.92334 1.24932 0.99580 0.93903 0.97777 1.69815 1.23998 1.19476 1.39504 0.86380 0.80820 0.79203 0.80357 1.21340 1.21685 1.20007 1.21399 1.01014 0.76626 0.84967 1.50727 1.19100 1.16449 1.51649 1.22695 0.95683 0.89979 0.96791 1.22953 0.83828 0.95823 0.92169 1.22333 0.99149 0.93750 1.00850 1.22169 0.99027 0.97645 0.97043 1.22389 0.99843 0.94854 0.98878 1.22656 1.02907 0.96878 0.93529 1.87185 1.40737 1.32334 1.64216 1.18955 0.84087 0.79028 0.79538 1.91038 1.38215 1.70784 1.39024 0.93756 0.93407 0.93733 0.93003 0.91591 0.93914 0.95082 0.93205 0.93098 0.85098 0.90302 0.90351 0.90223 0.89903 0.91595 0.91577 0.91443 0.91146 0.89543 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.14 -2.57 6.26 -26.73 -0.17 -2.74 16 3 C 0.14 2.87 5.67 -4.05 -0.02 2.85 16 4 N -0.57 -13.77 2.69 -176.95 -0.48 -14.25 16 5 C -0.28 -7.64 9.48 -15.06 -0.14 -7.79 16 6 H 0.06 1.66 7.93 -52.49 -0.42 1.24 16 7 C 0.04 1.14 4.95 -17.43 -0.09 1.05 16 8 N -0.89 -25.79 11.34 55.49 0.63 -25.16 16 9 Si 0.90 23.89 29.61 -169.99 -5.03 18.86 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 12 H -0.27 -7.65 7.11 56.52 0.40 -7.24 16 13 C 0.37 8.48 6.17 -63.76 -0.39 8.09 16 14 N -0.63 -13.05 3.22 -182.79 -0.59 -13.64 16 15 C 0.07 1.11 6.97 -3.52 -0.02 1.09 16 16 C 0.09 1.31 1.20 -90.09 -0.11 1.20 16 17 C -0.12 -1.48 6.15 -26.05 -0.16 -1.64 16 18 C -0.12 -1.18 6.82 -25.43 -0.17 -1.35 16 19 C -0.12 -1.21 6.84 -24.92 -0.17 -1.38 16 20 C -0.12 -1.36 5.94 -25.22 -0.15 -1.51 16 21 O -0.33 -6.64 10.58 -38.86 -0.41 -7.05 16 22 C 0.63 14.90 8.86 53.79 0.48 15.38 16 23 O -0.51 -14.44 17.56 -19.09 -0.34 -14.78 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.04 0.86 8.04 -51.93 -0.42 0.45 16 30 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.05 1.05 8.07 -51.93 -0.42 0.64 16 33 H 0.13 3.60 5.13 -51.93 -0.27 3.33 16 34 H 0.08 1.11 7.26 -51.93 -0.38 0.74 16 35 H 0.08 0.98 7.65 -51.93 -0.40 0.59 16 36 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.08 0.84 7.51 -51.93 -0.39 0.45 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -32.63 346.79 -9.03 -41.66 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.29 Total: -2.35 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.75 Total: 11.48 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.43 Total: -53.05 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.75 Total: -21.83 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.03 Total: 18.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.63 -9.03 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494639134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.458 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds