Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 C 1.53007 * 109.47056 * 240.00158 * 2 1 3 5 5 O 1.45201 * 109.47320 * 120.00367 * 2 1 3 6 6 C 1.34638 * 117.00173 * 59.99842 * 5 2 1 7 7 O 1.21512 * 119.99482 * 0.02562 * 6 5 2 8 8 N 1.34772 * 119.99990 * 180.02562 * 6 5 2 9 9 C 1.48141 * 127.83901 * 180.02562 * 8 6 5 10 10 C 1.54397 * 104.62004 * 140.41066 * 9 8 6 11 11 H 1.08992 * 117.61568 * 244.78567 * 10 9 8 12 12 C 1.54289 * 104.95626 * 23.86671 * 10 9 8 13 13 H 1.08992 * 121.81590 * 223.07502 * 12 10 9 14 14 C 1.48149 * 127.83828 * 359.97438 * 8 6 5 15 15 C 1.52997 * 59.72100 * 114.13902 * 12 10 9 16 16 H 1.09004 * 117.44704 * 252.35095 * 15 12 10 17 17 N 1.46898 * 117.44777 * 107.64557 * 15 12 10 18 18 C 1.46897 * 111.00221 * 135.76012 * 17 15 12 19 19 C 1.50706 * 109.47156 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00098 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99568 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00488 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99470 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47198 * 59.99865 * 23 21 19 25 25 H 1.48497 * 109.47057 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47209 * 299.99947 * 23 21 19 27 27 H 1.08993 * 109.47290 * 299.99463 * 1 2 3 28 28 H 1.09003 * 109.47559 * 59.99797 * 1 2 3 29 29 H 1.09003 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47165 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47157 * 300.00449 * 3 2 1 32 32 H 1.08999 * 109.47129 * 60.00204 * 3 2 1 33 33 H 1.08994 * 109.47145 * 299.99754 * 4 2 1 34 34 H 1.09003 * 109.46900 * 59.99641 * 4 2 1 35 35 H 1.08996 * 109.47030 * 179.97438 * 4 2 1 36 36 H 1.09002 * 110.40986 * 21.62744 * 9 8 6 37 37 H 1.08998 * 110.50630 * 259.24784 * 9 8 6 38 38 H 1.08999 * 110.40616 * 338.37177 * 14 8 6 39 39 H 1.08997 * 110.40974 * 100.68363 * 14 8 6 40 40 H 1.00906 * 110.99249 * 11.80791 * 17 15 12 41 41 H 1.09009 * 109.47196 * 300.00100 * 18 17 15 42 42 H 1.08992 * 109.47389 * 60.00296 * 18 17 15 43 43 H 0.96998 * 119.99921 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3383 7 8 0.9516 -2.5097 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.7766 -4.0778 2.7568 10 6 3.1023 -4.6210 3.3324 11 1 3.6086 -5.4102 2.7767 12 6 3.8547 -3.3748 3.8435 13 1 4.9215 -3.2357 3.6687 14 6 2.9186 -2.1882 3.5316 15 6 3.3671 -4.4393 4.8283 16 1 2.5170 -4.1860 5.4618 17 7 4.3804 -5.3048 5.4464 18 6 4.1319 -5.4615 6.8857 19 6 5.1894 -6.3531 7.4840 20 1 5.9679 -6.7627 6.8576 21 6 5.1622 -6.6466 8.8309 22 7 4.2139 -6.1481 9.5936 23 14 6.4726 -7.7523 9.5723 24 1 7.8105 -7.1422 9.3649 25 1 6.2208 -7.9116 11.0270 26 1 6.4280 -9.0828 8.9142 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7209 -1.2495 36 1 1.4946 -4.6336 1.8625 37 1 0.9856 -4.1357 3.5045 38 1 3.4980 -1.3184 3.2218 39 1 2.3067 -1.9463 4.4006 40 1 5.3101 -4.9514 5.2763 41 1 4.1649 -4.4847 7.3685 42 1 3.1499 -5.9091 7.0383 43 1 4.1951 -6.3544 10.5412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496527640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = -43.950449 kcal Electronic energy + Delta-G solvation = -22167.997552 eV Core-core repulsion = 18828.424508 eV Total energy + Delta-G solvation = -3339.573044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93283 -39.54969 -36.95773 -35.11752 -34.18259 -32.99496 -31.33995 -28.55919 -27.64796 -27.59790 -26.88374 -25.13117 -22.16216 -21.51114 -20.73741 -20.04112 -19.48573 -17.95049 -16.71446 -16.68417 -16.23394 -15.46244 -15.02243 -14.85991 -14.60564 -14.20319 -14.09483 -13.56442 -13.42074 -12.87044 -12.74753 -12.42986 -12.37920 -12.29333 -12.22679 -12.12205 -12.00451 -11.64058 -11.51095 -11.41159 -11.37569 -10.86793 -10.79245 -10.54341 -10.24761 -10.19013 -10.11370 -9.64188 -9.21620 -8.87830 -8.53555 -7.39177 -6.09598 -4.12315 1.96403 2.76902 3.30524 3.34757 3.37565 3.67936 3.86512 4.32141 4.48369 4.50019 4.53919 4.66743 4.79936 4.92724 5.12841 5.21520 5.26784 5.29092 5.33951 5.34543 5.43969 5.45667 5.52303 5.61064 5.62439 5.65165 5.73282 5.78919 5.92920 6.00432 6.06591 6.13037 6.20640 6.31958 6.37583 7.12172 7.30348 7.46788 7.69202 8.02930 8.22201 8.25679 8.45930 8.95662 9.52894 11.01383 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.048193 B = 0.002627 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.855302 B =10654.091595 C =10752.789642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.674 3.326 7 O -0.572 6.572 8 N -0.608 5.608 9 C 0.153 3.847 10 C -0.175 4.175 11 H 0.122 0.878 12 C -0.211 4.211 13 H 0.119 0.881 14 C 0.134 3.866 15 C 0.092 3.908 16 H 0.106 0.894 17 N -0.656 5.656 18 C 0.195 3.805 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.897 5.897 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.336 0.664 41 H -0.008 1.008 42 H 0.032 0.968 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 13.958 -17.883 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.430 3.570 7 O -0.462 6.462 8 N -0.349 5.349 9 C 0.032 3.968 10 C -0.196 4.196 11 H 0.140 0.860 12 C -0.233 4.233 13 H 0.137 0.863 14 C 0.012 3.988 15 C -0.021 4.021 16 H 0.124 0.876 17 N -0.284 5.284 18 C 0.069 3.931 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.155 0.845 41 H 0.010 0.990 42 H 0.050 0.950 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.878 13.333 -18.241 23.346 hybrid contribution 1.010 0.294 0.676 1.250 sum -4.868 13.627 -17.565 22.758 Atomic orbital electron populations 1.22514 0.94039 1.05092 1.02382 1.22060 0.94365 0.91505 0.82221 1.21854 1.02280 0.92545 1.03058 1.22515 1.01573 1.03537 0.96402 1.86311 1.71547 1.23580 1.46267 1.17354 0.78610 0.80306 0.80750 1.90886 1.41882 1.70570 1.42876 1.48011 1.52838 1.13068 1.20945 1.21739 0.96050 0.78595 1.00401 1.23938 0.96403 0.99772 0.99497 0.85965 1.24279 0.99203 0.90225 1.09556 0.86311 1.21825 0.91970 0.96370 0.88681 1.22591 0.98127 0.91990 0.89376 0.87626 1.60330 1.03771 1.46847 1.17463 1.19651 0.98018 0.95637 0.79785 1.21108 1.11625 1.29853 0.93207 0.91949 1.24974 0.96111 0.96261 0.97071 1.69941 1.32900 1.44710 1.05998 0.86517 0.81699 0.81066 0.77864 1.20226 1.21293 1.20103 0.92185 0.91222 0.89360 0.91468 0.90187 0.91462 0.89358 0.91231 0.92194 0.89316 0.90346 0.89717 0.90530 0.84495 0.98988 0.95008 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.37 37.16 0.31 -1.47 16 2 C 0.14 1.37 1.13 -90.62 -0.10 1.27 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 5 O -0.36 -4.64 9.41 -40.32 -0.38 -5.02 16 6 C 0.67 9.69 8.01 54.05 0.43 10.13 16 7 O -0.57 -9.11 12.15 -19.28 -0.23 -9.34 16 8 N -0.61 -8.23 3.32 -175.12 -0.58 -8.81 16 9 C 0.15 2.00 6.85 -2.41 -0.02 1.99 16 10 C -0.18 -2.47 7.06 -89.21 -0.63 -3.10 16 11 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 12 C -0.21 -2.85 6.80 -89.25 -0.61 -3.46 16 13 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 14 C 0.13 1.65 6.87 -2.44 -0.02 1.63 16 15 C 0.09 1.50 5.86 -67.72 -0.40 1.11 16 16 H 0.11 1.75 7.90 -51.93 -0.41 1.34 16 17 N -0.66 -13.21 6.77 -107.99 -0.73 -13.94 16 18 C 0.20 4.87 5.29 -4.97 -0.03 4.84 16 19 C -0.52 -14.26 9.32 -34.44 -0.32 -14.58 16 20 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 23 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.34 6.42 8.54 -39.29 -0.34 6.09 16 41 H -0.01 -0.20 8.14 -51.92 -0.42 -0.63 16 42 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -30.26 349.96 -8.98 -39.24 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.22 Total: 4.09 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.83 Total: -2.33 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.58 Total: -48.12 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.61 Total: -14.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.26 -8.98 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496527640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.707 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds