Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47297 * 2 1 4 4 N 1.46499 * 109.47208 * 120.00218 * 2 1 3 5 5 C 1.46504 * 119.99949 * 304.24696 * 4 2 1 6 6 C 1.50702 * 109.46904 * 269.99894 * 5 4 2 7 7 H 1.08004 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99996 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00428 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46745 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47327 * 119.99808 * 10 8 6 13 13 H 1.48497 * 109.47227 * 240.00145 * 10 8 6 14 14 C 1.34773 * 120.00043 * 124.24032 * 4 2 1 15 15 O 1.21279 * 120.00270 * 185.39075 * 14 4 2 16 16 C 1.50707 * 120.00061 * 5.39869 * 14 4 2 17 17 N 1.46495 * 109.46919 * 174.94577 * 16 14 4 18 18 C 1.45751 * 117.94979 * 270.01899 * 17 16 14 19 19 C 1.52918 * 110.49111 * 160.92983 * 18 17 16 20 20 C 1.53175 * 108.62922 * 50.74820 * 19 18 17 21 21 C 1.53073 * 108.51312 * 292.41827 * 20 19 18 22 22 C 1.33359 * 117.94276 * 90.00630 * 17 16 14 23 23 O 1.21281 * 118.24737 * 2.21666 * 22 17 16 24 24 H 1.09001 * 109.46702 * 295.63839 * 1 2 3 25 25 H 1.09001 * 109.46951 * 55.63460 * 1 2 3 26 26 H 1.09000 * 109.47579 * 175.63918 * 1 2 3 27 27 H 1.09004 * 109.46649 * 240.00139 * 2 1 3 28 28 H 1.08996 * 109.47474 * 184.58817 * 3 2 1 29 29 H 1.09004 * 109.47202 * 304.58941 * 3 2 1 30 30 H 1.09001 * 109.46962 * 64.58545 * 3 2 1 31 31 H 1.09003 * 109.47180 * 30.00072 * 5 4 2 32 32 H 1.08999 * 109.47285 * 149.99813 * 5 4 2 33 33 H 0.96996 * 119.99999 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46570 * 54.94798 * 16 14 4 35 35 H 1.08996 * 109.46874 * 294.94717 * 16 14 4 36 36 H 1.09001 * 109.30134 * 281.23998 * 18 17 16 37 37 H 1.08996 * 109.29792 * 40.82315 * 18 17 16 38 38 H 1.08998 * 109.61015 * 170.51035 * 19 18 17 39 39 H 1.08997 * 109.60118 * 290.83736 * 19 18 17 40 40 H 1.08997 * 109.57180 * 172.69479 * 20 19 18 41 41 H 1.08999 * 109.69078 * 52.21295 * 20 19 18 42 42 H 1.08997 * 109.40229 * 288.84199 * 21 20 19 43 43 H 1.08998 * 109.40012 * 169.01562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5894 -0.2467 2.5247 6 6 2.5497 0.7937 3.0410 7 1 3.3947 1.0945 2.4395 8 6 2.3495 1.3615 4.2813 9 7 1.3201 0.9956 5.0137 10 14 3.5393 2.6517 4.9210 11 1 4.6046 2.8855 3.9132 12 1 2.8073 3.9192 5.1715 13 1 4.1521 2.1754 6.1870 14 6 2.8622 -1.7345 1.0743 15 8 3.1895 -2.3675 2.0556 16 6 3.3992 -2.1150 -0.2815 17 7 4.3795 -3.1935 -0.1332 18 6 5.7759 -2.8252 0.0639 19 6 6.5597 -3.9963 0.6575 20 6 6.2892 -5.2448 -0.1877 21 6 4.8245 -5.6491 -0.0024 22 6 3.9382 -4.4508 -0.1867 23 8 2.7580 -4.6365 -0.3958 24 1 -0.3633 0.4447 0.9265 25 1 -0.3633 0.5801 -0.8483 26 1 -0.3634 -1.0247 -0.0781 27 1 1.8933 -0.5138 -0.8900 28 1 3.1269 1.4436 -0.0822 29 1 1.6112 1.9795 -0.8460 30 1 1.7454 1.9320 0.9282 31 1 0.5895 0.1823 2.4592 32 1 1.5756 -1.0980 3.2054 33 1 1.1790 1.3954 5.8861 34 1 3.8781 -1.2491 -0.7386 35 1 2.5795 -2.4536 -0.9150 36 1 6.2140 -2.5475 -0.8948 37 1 5.8317 -1.9760 0.7449 38 1 7.6255 -3.7681 0.6428 39 1 6.2370 -4.1694 1.6841 40 1 6.9382 -6.0562 0.1414 41 1 6.4792 -5.0253 -1.2383 42 1 4.6842 -6.0524 1.0004 43 1 4.5629 -6.4094 -0.7383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520506890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -75.717713 kcal Electronic energy + Delta-G solvation = -23614.895062 eV Core-core repulsion = 20273.944486 eV Total energy + Delta-G solvation = -3340.950576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52678 -38.78537 -36.37009 -35.88768 -33.93203 -32.79058 -30.79598 -29.70620 -28.64469 -26.77770 -26.40018 -24.38176 -22.94568 -22.10725 -21.19871 -18.74827 -18.06138 -16.89467 -16.55246 -16.38991 -16.31335 -15.40716 -14.88652 -14.36683 -14.25219 -14.07094 -14.00731 -13.49599 -13.36797 -13.13154 -12.96764 -12.69097 -12.34182 -11.84231 -11.70502 -11.55025 -11.45969 -11.31904 -11.19223 -11.06795 -11.01848 -10.89841 -10.81689 -10.59145 -10.34653 -9.99548 -9.54479 -9.50730 -9.26788 -8.41920 -8.32665 -7.59806 -6.02779 -4.06520 2.78072 3.08886 3.28235 3.35750 3.38344 3.47685 4.02661 4.44569 4.56886 4.66614 4.69161 4.76009 5.09130 5.25591 5.30441 5.31523 5.33916 5.41991 5.50593 5.59114 5.62180 5.66302 5.69152 5.75863 5.79158 5.87083 6.06293 6.12868 6.17826 6.27927 6.36388 6.44134 6.64369 6.97153 7.16371 7.52488 7.59949 7.61183 7.94547 8.26870 8.32313 8.49291 8.92880 9.13615 9.57550 11.05302 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.005386 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.100615 B = 5197.681594 C = 5968.894277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.593 5.593 5 C 0.244 3.756 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.495 3.505 15 O -0.536 6.536 16 C 0.086 3.914 17 N -0.582 5.582 18 C 0.115 3.885 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.132 4.132 22 C 0.522 3.478 23 O -0.556 6.556 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -6.251 -14.138 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.219 4.219 4 N -0.326 5.326 5 C 0.125 3.875 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.280 3.720 15 O -0.412 6.412 16 C -0.041 4.041 17 N -0.314 5.314 18 C -0.008 4.008 19 C -0.174 4.174 20 C -0.159 4.159 21 C -0.171 4.171 22 C 0.311 3.689 23 O -0.435 6.435 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.858 -6.666 -13.535 17.011 hybrid contribution 0.646 0.951 0.560 1.279 sum 8.504 -5.715 -12.976 16.533 Atomic orbital electron populations 1.22154 0.95346 1.01809 1.02756 1.20981 0.94488 0.93906 0.87706 1.22203 1.00646 0.95909 1.03133 1.48300 1.45365 1.30172 1.08724 1.19255 0.95342 0.95583 0.77295 1.21470 1.10796 1.21533 1.01942 0.92372 1.24939 0.95559 0.97167 0.96551 1.69952 1.28549 1.43108 1.11719 0.86500 0.81072 0.81243 0.78935 1.19861 1.21011 1.21006 1.20654 0.79999 0.80774 0.90619 1.90646 1.58855 1.52084 1.39658 1.21488 0.94390 0.90975 0.97233 1.46862 1.07919 1.05422 1.71220 1.21405 0.80100 0.98685 1.00565 1.21843 1.00465 0.94432 1.00683 1.21620 0.95439 0.98227 1.00624 1.21626 0.94510 0.96003 1.04991 1.20060 0.88861 0.84203 0.75794 1.90697 1.17635 1.85580 1.49591 0.91032 0.92219 0.92819 0.91061 0.93148 0.93143 0.89616 0.94669 0.94079 0.92848 0.88349 0.87283 0.91761 0.90279 0.89894 0.90348 0.90706 0.91265 0.88194 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.19 37.16 0.34 -2.20 16 2 C 0.13 2.23 3.12 -67.93 -0.21 2.02 16 3 C -0.16 -2.59 8.74 37.16 0.32 -2.26 16 4 N -0.59 -12.75 2.39 -167.46 -0.40 -13.15 16 5 C 0.24 6.40 4.73 -5.19 -0.02 6.38 16 6 C -0.52 -14.30 7.72 -34.44 -0.27 -14.57 16 7 H 0.06 1.59 7.59 -52.48 -0.40 1.19 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.49 10.71 7.71 -10.98 -0.08 10.63 16 15 O -0.54 -13.94 15.93 5.56 0.09 -13.85 16 16 C 0.09 1.40 4.03 -5.19 -0.02 1.38 16 17 N -0.58 -8.94 2.33 -176.34 -0.41 -9.35 16 18 C 0.12 1.37 6.32 -4.49 -0.03 1.34 16 19 C -0.14 -1.36 6.02 -26.68 -0.16 -1.52 16 20 C -0.12 -1.05 6.02 -26.60 -0.16 -1.21 16 21 C -0.13 -1.53 6.04 -28.10 -0.17 -1.70 16 22 C 0.52 8.52 7.38 -11.87 -0.09 8.43 16 23 O -0.56 -11.28 16.18 5.56 0.09 -11.19 16 24 H 0.07 1.27 6.34 -51.93 -0.33 0.94 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.99 5.85 -51.93 -0.30 0.69 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.66 6.60 -51.93 -0.34 1.32 16 31 H 0.04 0.94 6.13 -51.93 -0.32 0.62 16 32 H 0.04 1.25 7.35 -51.93 -0.38 0.87 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.29 7.73 -51.93 -0.40 0.89 16 35 H 0.11 1.76 6.71 -51.93 -0.35 1.41 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -35.44 343.68 -7.41 -42.85 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.03 Total: 0.44 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.65 Total: 8.31 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.07 Total: -48.31 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.18 Total: -25.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.44 -7.41 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520506890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.864 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds