Wall clock time and date at job start Tue Mar 31 2020 06:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47297 * 2 1 4 4 N 1.46499 * 109.47208 * 120.00218 * 2 1 3 5 5 C 1.46504 * 119.99949 * 304.24696 * 4 2 1 6 6 C 1.50702 * 109.46904 * 269.99894 * 5 4 2 7 7 H 1.08004 * 119.99884 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00095 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99996 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00428 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46745 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47327 * 119.99808 * 10 8 6 13 13 H 1.48497 * 109.47227 * 240.00145 * 10 8 6 14 14 C 1.34773 * 120.00043 * 124.24032 * 4 2 1 15 15 O 1.21279 * 120.00270 * 185.39075 * 14 4 2 16 16 C 1.50707 * 120.00061 * 5.39869 * 14 4 2 17 17 N 1.46495 * 109.46919 * 174.94577 * 16 14 4 18 18 C 1.45751 * 117.94979 * 270.01899 * 17 16 14 19 19 C 1.52918 * 110.49111 * 160.92983 * 18 17 16 20 20 C 1.53175 * 108.62922 * 50.74820 * 19 18 17 21 21 C 1.53073 * 108.51312 * 292.41827 * 20 19 18 22 22 C 1.33359 * 117.94276 * 90.00630 * 17 16 14 23 23 O 1.21281 * 118.24737 * 2.21666 * 22 17 16 24 24 H 1.09001 * 109.46702 * 295.63839 * 1 2 3 25 25 H 1.09001 * 109.46951 * 55.63460 * 1 2 3 26 26 H 1.09000 * 109.47579 * 175.63918 * 1 2 3 27 27 H 1.09004 * 109.46649 * 240.00139 * 2 1 3 28 28 H 1.08996 * 109.47474 * 184.58817 * 3 2 1 29 29 H 1.09004 * 109.47202 * 304.58941 * 3 2 1 30 30 H 1.09001 * 109.46962 * 64.58545 * 3 2 1 31 31 H 1.09003 * 109.47180 * 30.00072 * 5 4 2 32 32 H 1.08999 * 109.47285 * 149.99813 * 5 4 2 33 33 H 0.96996 * 119.99999 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46570 * 54.94798 * 16 14 4 35 35 H 1.08996 * 109.46874 * 294.94717 * 16 14 4 36 36 H 1.09001 * 109.30134 * 281.23998 * 18 17 16 37 37 H 1.08996 * 109.29792 * 40.82315 * 18 17 16 38 38 H 1.08998 * 109.61015 * 170.51035 * 19 18 17 39 39 H 1.08997 * 109.60118 * 290.83736 * 19 18 17 40 40 H 1.08997 * 109.57180 * 172.69479 * 20 19 18 41 41 H 1.08999 * 109.69078 * 52.21295 * 20 19 18 42 42 H 1.08997 * 109.40229 * 288.84199 * 21 20 19 43 43 H 1.08998 * 109.40012 * 169.01562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5894 -0.2467 2.5247 6 6 2.5497 0.7937 3.0410 7 1 3.3947 1.0945 2.4395 8 6 2.3495 1.3615 4.2813 9 7 1.3201 0.9956 5.0137 10 14 3.5393 2.6517 4.9210 11 1 4.6046 2.8855 3.9132 12 1 2.8073 3.9192 5.1715 13 1 4.1521 2.1754 6.1870 14 6 2.8622 -1.7345 1.0743 15 8 3.1895 -2.3675 2.0556 16 6 3.3992 -2.1150 -0.2815 17 7 4.3795 -3.1935 -0.1332 18 6 5.7759 -2.8252 0.0639 19 6 6.5597 -3.9963 0.6575 20 6 6.2892 -5.2448 -0.1877 21 6 4.8245 -5.6491 -0.0024 22 6 3.9382 -4.4508 -0.1867 23 8 2.7580 -4.6365 -0.3958 24 1 -0.3633 0.4447 0.9265 25 1 -0.3633 0.5801 -0.8483 26 1 -0.3634 -1.0247 -0.0781 27 1 1.8933 -0.5138 -0.8900 28 1 3.1269 1.4436 -0.0822 29 1 1.6112 1.9795 -0.8460 30 1 1.7454 1.9320 0.9282 31 1 0.5895 0.1823 2.4592 32 1 1.5756 -1.0980 3.2054 33 1 1.1790 1.3954 5.8861 34 1 3.8781 -1.2491 -0.7386 35 1 2.5795 -2.4536 -0.9150 36 1 6.2140 -2.5475 -0.8948 37 1 5.8317 -1.9760 0.7449 38 1 7.6255 -3.7681 0.6428 39 1 6.2370 -4.1694 1.6841 40 1 6.9382 -6.0562 0.1414 41 1 6.4792 -5.0253 -1.2383 42 1 4.6842 -6.0524 1.0004 43 1 4.5629 -6.4094 -0.7383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520506890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:12 Heat of formation + Delta-G solvation = -99.652377 kcal Electronic energy + Delta-G solvation = -23615.932947 eV Core-core repulsion = 20273.944486 eV Total energy + Delta-G solvation = -3341.988461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80606 -40.38039 -37.67141 -37.38558 -35.16681 -34.76971 -32.43984 -30.75958 -30.26577 -28.28071 -27.90196 -25.43938 -24.75099 -23.27639 -22.63531 -20.01919 -19.41036 -18.61936 -18.41671 -17.72025 -17.55694 -16.84716 -16.51541 -16.02947 -15.77960 -15.14130 -15.12048 -14.86927 -14.50416 -14.47009 -14.27635 -14.16218 -13.95833 -13.37330 -13.25237 -13.03608 -12.88198 -12.78439 -12.67190 -12.50683 -12.24156 -12.22969 -12.09734 -11.84658 -11.81136 -11.67937 -11.50485 -10.88399 -10.72489 -10.62549 -9.70654 -9.43357 -8.20069 -6.32954 1.35862 1.37888 1.48974 1.51818 1.76975 1.97474 2.33667 2.49881 3.09638 3.59581 3.65064 3.84021 3.90451 3.93512 3.97765 4.15702 4.27321 4.33960 4.38851 4.51001 4.56983 4.61990 4.80476 4.85055 4.87091 4.94242 4.98219 5.02869 5.04710 5.10847 5.14078 5.19661 5.31247 5.39148 5.41721 5.59444 5.63960 5.87915 6.09427 6.44060 6.71976 6.79905 7.11409 7.29474 7.46377 8.88012 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017694 B = 0.005386 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.100615 B = 5197.681594 C = 5968.894277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.597 5.597 5 C 0.263 3.737 6 C -0.522 4.522 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.261 1.261 12 H -0.272 1.272 13 H -0.286 1.286 14 C 0.482 3.518 15 O -0.593 6.593 16 C 0.096 3.904 17 N -0.584 5.584 18 C 0.107 3.893 19 C -0.135 4.135 20 C -0.110 4.110 21 C -0.130 4.130 22 C 0.508 3.492 23 O -0.607 6.607 24 H 0.039 0.961 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.024 0.976 32 H -0.016 1.016 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.047 0.953 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -5.430 -16.979 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.328 5.328 5 C 0.141 3.859 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.212 1.212 14 C 0.270 3.730 15 O -0.474 6.474 16 C -0.031 4.031 17 N -0.315 5.315 18 C -0.015 4.015 19 C -0.173 4.173 20 C -0.147 4.147 21 C -0.169 4.169 22 C 0.299 3.701 23 O -0.490 6.490 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.428 -5.819 -16.427 20.309 hybrid contribution -0.204 0.676 1.439 1.603 sum 10.223 -5.143 -14.988 18.857 Atomic orbital electron populations 1.22132 0.94700 1.01965 1.02838 1.21429 0.95143 0.94469 0.86781 1.22123 1.01088 0.95180 1.02770 1.48363 1.45296 1.30645 1.08527 1.18670 0.95023 0.92996 0.79190 1.21666 1.10746 1.21415 1.02220 0.92163 1.25888 0.97339 0.99501 0.96824 1.70093 1.30527 1.44616 1.12204 0.85380 0.78900 0.78509 0.78114 1.18481 1.19752 1.21193 1.21756 0.79155 0.79792 0.92331 1.90609 1.60769 1.53874 1.42155 1.21469 0.95339 0.92880 0.93396 1.47119 1.09123 1.04996 1.70239 1.21729 0.78577 0.98861 1.02329 1.21879 1.01885 0.94486 0.99057 1.21617 0.93271 0.98227 1.01607 1.21701 0.95929 0.94238 1.05048 1.21001 0.88890 0.85569 0.74641 1.90660 1.19926 1.86407 1.51967 0.94171 0.88144 0.93307 0.87119 0.92768 0.89090 0.93537 0.95763 0.99781 0.92672 0.84278 0.86805 0.87709 0.92392 0.86677 0.93377 0.88107 0.89212 0.88906 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.19 71.98 0.66 -4.17 16 2 C 0.12 3.97 3.12 44.99 0.14 4.11 16 3 C -0.15 -4.63 8.74 71.98 0.63 -4.00 16 4 N -0.60 -26.34 2.39 -802.12 -1.91 -28.25 16 5 C 0.26 14.60 4.73 85.63 0.41 15.01 16 6 C -0.52 -29.74 7.72 25.60 0.20 -29.54 16 7 H 0.06 3.33 7.59 -2.91 -0.02 3.31 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 10 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 C 0.48 21.42 7.71 87.66 0.68 22.10 16 15 O -0.59 -32.67 15.93 -3.03 -0.05 -32.71 16 16 C 0.10 3.01 4.03 85.64 0.35 3.35 16 17 N -0.58 -17.28 2.33 -831.00 -1.94 -19.21 16 18 C 0.11 2.29 6.32 86.49 0.55 2.84 16 19 C -0.14 -2.37 6.02 30.63 0.18 -2.19 16 20 C -0.11 -1.53 6.02 30.68 0.18 -1.34 16 21 C -0.13 -2.83 6.04 29.71 0.18 -2.65 16 22 C 0.51 16.42 7.38 87.71 0.65 17.07 16 23 O -0.61 -25.07 16.18 -3.03 -0.05 -25.12 16 24 H 0.04 1.46 6.34 -2.39 -0.02 1.45 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 2.71 5.85 -2.39 -0.01 2.69 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.78 6.60 -2.39 -0.02 1.76 16 31 H 0.02 1.39 6.13 -2.39 -0.01 1.37 16 32 H -0.02 -1.06 7.35 -2.39 -0.02 -1.07 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.14 3.18 7.73 -2.39 -0.02 3.16 16 35 H 0.11 3.51 6.71 -2.39 -0.02 3.50 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.95 8.13 -2.39 -0.02 0.93 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -84.56 343.68 4.60 -79.95 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.98 Total: 14.68 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 5.26 Total: 21.20 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.57 Total: -104.84 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.10 Total: -57.83 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -84.56 4.60 -79.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520506890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.700 kcal (2) G-P(sol) polarization free energy of solvation -84.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds