Wall clock time and date at job start Tue Mar 31 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21282 * 119.99989 * 2 1 4 4 N 1.34774 * 119.99930 * 179.97438 * 2 1 3 5 5 C 1.47426 * 125.64954 * 0.02982 * 4 2 1 6 6 C 1.54906 * 104.83107 * 155.84691 * 5 4 2 7 7 C 1.55157 * 101.58238 * 37.01279 * 6 5 4 8 8 C 1.47021 * 125.64668 * 180.02562 * 4 2 1 9 9 H 1.09006 * 109.87994 * 300.64846 * 8 4 2 10 10 C 1.50698 * 109.88562 * 61.66324 * 8 4 2 11 11 O 1.21277 * 119.99466 * 25.83365 * 10 8 4 12 12 N 1.34776 * 119.99851 * 205.83092 * 10 8 4 13 13 C 1.46494 * 120.00501 * 5.03191 * 12 10 8 14 14 C 1.50706 * 109.47047 * 89.99633 * 13 12 10 15 15 H 1.08005 * 119.99936 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00062 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00016 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99911 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47480 * 89.99834 * 18 16 14 20 20 H 1.48506 * 109.46719 * 209.99577 * 18 16 14 21 21 H 1.48492 * 109.47099 * 329.99227 * 18 16 14 22 22 C 1.46505 * 119.99661 * 185.03109 * 12 10 8 23 23 C 1.53003 * 109.47279 * 299.88652 * 22 12 10 24 24 C 1.53004 * 109.46869 * 59.88549 * 22 12 10 25 25 H 1.09002 * 109.46690 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47109 * 300.00798 * 1 2 3 27 27 H 1.09007 * 109.46283 * 60.00689 * 1 2 3 28 28 H 1.08996 * 110.36749 * 274.68697 * 5 4 2 29 29 H 1.09002 * 110.36380 * 37.01038 * 5 4 2 30 30 H 1.08996 * 111.00505 * 155.08519 * 6 5 4 31 31 H 1.08996 * 111.00814 * 278.93453 * 6 5 4 32 32 H 1.09003 * 110.72092 * 206.13234 * 7 6 5 33 33 H 1.09000 * 110.71922 * 82.85744 * 7 6 5 34 34 H 1.08996 * 109.47693 * 209.99756 * 13 12 10 35 35 H 1.08999 * 109.47009 * 330.00452 * 13 12 10 36 36 H 0.96999 * 120.00203 * 180.02562 * 17 16 14 37 37 H 1.08994 * 109.47185 * 179.88055 * 22 12 10 38 38 H 1.09004 * 109.47059 * 66.58995 * 23 22 12 39 39 H 1.08997 * 109.46880 * 186.58894 * 23 22 12 40 40 H 1.08996 * 109.47033 * 306.59068 * 23 22 12 41 41 H 1.08999 * 109.47417 * 53.90413 * 24 22 12 42 42 H 1.09000 * 109.47091 * 173.90914 * 24 22 12 43 43 H 1.09008 * 109.47170 * 293.90185 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5731 -2.5103 0.0005 6 6 2.6546 -3.4350 -0.6116 7 6 3.9549 -2.8232 -0.0265 8 6 3.6440 -1.3119 0.0011 9 1 4.0646 -0.8285 -0.8807 10 6 4.2198 -0.6926 1.2485 11 8 3.5420 -0.6049 2.2503 12 7 5.4880 -0.2364 1.2507 13 6 6.2704 -0.2411 0.0122 14 6 6.0691 1.0640 -0.7141 15 1 5.4232 1.8213 -0.2947 16 6 6.7101 1.2916 -1.9133 17 7 6.5348 2.4306 -2.5468 18 14 7.8277 -0.0180 -2.6382 19 1 7.0345 -0.9146 -3.5169 20 1 8.9006 0.6318 -3.4332 21 1 8.4364 -0.8119 -1.5409 22 6 6.0842 0.2642 2.4918 23 6 5.2663 1.4495 3.0086 24 6 6.0877 -0.8493 3.5412 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.3401 -2.8213 1.0189 29 1 0.6735 -2.5195 -0.6150 30 1 2.5228 -4.4643 -0.2782 31 1 2.6498 -3.3749 -1.6999 32 1 4.8051 -3.0304 -0.6765 33 1 4.1380 -3.1975 0.9807 34 1 7.3268 -0.3652 0.2501 35 1 5.9416 -1.0643 -0.6221 36 1 6.9855 2.5906 -3.3906 37 1 7.1078 0.5853 2.2995 38 1 4.2776 1.1044 3.3113 39 1 5.7733 1.8951 3.8644 40 1 5.1653 2.1933 2.2184 41 1 6.5771 -1.7330 3.1318 42 1 6.6271 -0.5125 4.4265 43 1 5.0612 -1.0955 3.8132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522281940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:53 Heat of formation + Delta-G solvation = -63.540980 kcal Electronic energy + Delta-G solvation = -24368.236233 eV Core-core repulsion = 21027.813680 eV Total energy + Delta-G solvation = -3340.422553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31371 -38.59796 -36.88998 -35.25679 -33.10013 -32.00258 -31.46748 -29.65146 -28.42256 -27.42491 -26.58008 -23.90415 -22.48182 -21.77159 -21.10700 -19.39641 -17.77970 -16.91370 -16.80699 -16.51227 -15.68472 -15.11024 -14.72704 -14.44858 -14.26234 -13.87892 -13.42109 -13.29960 -12.90743 -12.80534 -12.59442 -12.54703 -12.39304 -12.19497 -11.97095 -11.78076 -11.63337 -11.53814 -11.22295 -11.13427 -10.90592 -10.79023 -10.72095 -10.57026 -10.29345 -10.17716 -9.48064 -9.38876 -9.02344 -8.64497 -8.11740 -7.63907 -6.10257 -4.11194 3.00268 3.19351 3.20268 3.26893 3.28818 3.51154 3.95822 4.32366 4.55455 4.64662 4.92975 5.07744 5.16777 5.23266 5.33314 5.43224 5.51563 5.56134 5.59138 5.71070 5.75498 5.77045 5.86220 5.89799 5.93392 6.06028 6.11545 6.23694 6.29750 6.35431 6.50720 6.51733 6.58452 6.67170 6.77360 7.03285 7.50500 7.53653 7.87087 8.25056 8.52280 8.64012 8.99782 9.07600 9.47867 11.02830 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.007864 C = 0.006759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.419645 B = 3559.710405 C = 4141.461372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.522 3.478 3 O -0.518 6.518 4 N -0.602 5.602 5 C 0.102 3.898 6 C -0.131 4.131 7 C -0.120 4.120 8 C 0.114 3.886 9 H 0.114 0.886 10 C 0.525 3.475 11 O -0.556 6.556 12 N -0.585 5.585 13 C 0.208 3.792 14 C -0.534 4.534 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.889 5.889 18 Si 0.867 3.133 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.264 1.264 22 C 0.150 3.850 23 C -0.162 4.162 24 C -0.163 4.163 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.312 -13.423 4.896 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.310 3.690 3 O -0.392 6.392 4 N -0.338 5.338 5 C -0.021 4.021 6 C -0.169 4.169 7 C -0.158 4.158 8 C 0.007 3.993 9 H 0.131 0.869 10 C 0.312 3.688 11 O -0.436 6.436 12 N -0.316 5.316 13 C 0.087 3.913 14 C -0.573 4.573 15 H 0.100 0.900 16 C -0.128 4.128 17 N -0.527 5.527 18 Si 0.694 3.306 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.189 1.189 22 C 0.046 3.954 23 C -0.220 4.220 24 C -0.221 4.221 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.312 -12.579 5.247 15.467 hybrid contribution 0.762 -0.483 -0.671 1.124 sum -6.550 -13.062 4.576 15.313 Atomic orbital electron populations 1.21844 0.91942 1.03738 1.04884 1.20400 0.90039 0.82340 0.76178 1.90850 1.70107 1.30242 1.48040 1.48270 1.05549 1.05777 1.74244 1.22307 0.96626 0.82363 1.00816 1.22775 0.94152 0.98821 1.01122 1.22568 0.98722 0.92081 1.02423 1.21644 0.81846 0.96726 0.99109 0.86864 1.20374 0.81426 0.77934 0.89066 1.90512 1.59412 1.58504 1.35160 1.47970 1.12912 1.60501 1.10228 1.19852 0.91457 0.98039 0.81955 1.21453 1.29434 1.00866 1.05521 0.89968 1.24896 0.96116 0.95269 0.96565 1.69910 1.42957 1.23558 1.16270 0.86998 0.81318 0.82420 0.79905 1.19951 1.20900 1.18888 1.20834 0.97164 0.93512 0.83876 1.22142 1.01402 0.97881 1.00541 1.22183 1.02984 0.98493 0.98422 0.90864 0.89031 0.89069 0.91352 0.90459 0.89724 0.90196 0.89301 0.90411 0.94932 0.95679 0.92547 0.89932 0.90964 0.93314 0.92004 0.93248 0.92530 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.19 36.01 0.37 -1.73 16 2 C 0.52 9.95 7.54 -10.98 -0.08 9.87 16 3 O -0.52 -13.01 16.94 5.56 0.09 -12.92 16 4 N -0.60 -10.35 2.76 -164.32 -0.45 -10.81 16 5 C 0.10 1.18 6.39 -2.53 -0.02 1.17 16 6 C -0.13 -1.35 7.09 -24.58 -0.17 -1.52 16 7 C -0.12 -1.65 6.22 -24.89 -0.15 -1.80 16 8 C 0.11 2.15 2.36 -68.10 -0.16 1.99 16 9 H 0.11 2.49 6.39 -51.93 -0.33 2.16 16 10 C 0.53 11.28 5.42 -10.99 -0.06 11.22 16 11 O -0.56 -12.67 12.83 5.56 0.07 -12.60 16 12 N -0.59 -12.68 2.41 -167.47 -0.40 -13.08 16 13 C 0.21 4.79 3.83 -5.19 -0.02 4.77 16 14 C -0.53 -14.99 9.67 -34.44 -0.33 -15.32 16 15 H 0.08 2.69 8.06 -52.48 -0.42 2.27 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 18 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 22 C 0.15 2.92 3.28 -67.92 -0.22 2.70 16 23 C -0.16 -3.25 9.00 37.16 0.33 -2.92 16 24 C -0.16 -2.66 9.03 37.16 0.34 -2.33 16 25 H 0.07 0.70 6.09 -51.93 -0.32 0.38 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.69 6.94 -51.93 -0.36 0.33 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.14 7.80 -51.93 -0.40 0.74 16 33 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 34 H 0.03 0.73 6.97 -51.93 -0.36 0.37 16 35 H 0.03 0.55 5.24 -51.93 -0.27 0.27 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.08 1.57 7.79 -51.93 -0.40 1.16 16 38 H 0.07 1.56 6.24 -51.93 -0.32 1.24 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.26 6.51 -51.92 -0.34 0.92 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -35.75 340.04 -6.66 -42.41 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.92 Total: 4.62 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.28 Total: 8.10 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.08 Total: -50.25 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: 0.17 Total: -25.52 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.75 -6.66 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522281940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.128 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds