Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21276 * 120.00111 * 2 1 4 4 N 1.34769 * 119.99640 * 179.97438 * 2 1 3 5 5 C 1.47422 * 125.65372 * 0.04525 * 4 2 1 6 6 C 1.54904 * 104.83715 * 204.08903 * 5 4 2 7 7 C 1.55400 * 101.66635 * 323.07578 * 6 5 4 8 8 C 1.47028 * 125.64768 * 180.02562 * 4 2 1 9 9 H 1.09002 * 109.88279 * 59.40242 * 8 4 2 10 10 C 1.50707 * 109.88018 * 298.39472 * 8 4 2 11 11 O 1.21278 * 119.99849 * 341.72063 * 10 8 4 12 12 N 1.34773 * 119.99705 * 161.71221 * 10 8 4 13 13 C 1.46506 * 120.00093 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.46878 * 270.00477 * 13 12 10 15 15 H 1.08004 * 120.00546 * 0.27446 * 14 13 12 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.46499 * 120.00342 * 0.02562 * 12 10 8 23 23 C 1.52998 * 109.47392 * 119.99632 * 22 12 10 24 24 C 1.53001 * 109.47155 * 240.00092 * 22 12 10 25 25 H 1.08998 * 109.47152 * 270.00547 * 1 2 3 26 26 H 1.09004 * 109.46916 * 30.00048 * 1 2 3 27 27 H 1.08998 * 109.47129 * 150.00048 * 1 2 3 28 28 H 1.08998 * 110.36773 * 322.93037 * 5 4 2 29 29 H 1.09010 * 110.36702 * 85.25312 * 5 4 2 30 30 H 1.09001 * 111.00438 * 81.06486 * 6 5 4 31 31 H 1.08999 * 111.00833 * 204.87882 * 6 5 4 32 32 H 1.08995 * 110.69755 * 277.04744 * 7 6 5 33 33 H 1.08997 * 110.85793 * 153.69931 * 7 6 5 34 34 H 1.08992 * 109.47424 * 150.00374 * 13 12 10 35 35 H 1.08997 * 109.46711 * 29.99975 * 13 12 10 36 36 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46989 * 359.97438 * 22 12 10 38 38 H 1.09000 * 109.47009 * 60.00067 * 23 22 12 39 39 H 1.09003 * 109.46901 * 180.02562 * 23 22 12 40 40 H 1.09007 * 109.46938 * 299.99973 * 23 22 12 41 41 H 1.08994 * 109.47755 * 59.99201 * 24 22 12 42 42 H 1.08998 * 109.46839 * 180.02562 * 24 22 12 43 43 H 1.09000 * 109.46657 * 299.98921 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5103 0.0002 6 6 2.6544 -3.4352 0.6121 7 6 3.9583 -2.8226 0.0295 8 6 3.6440 -1.3120 0.0011 9 1 4.0639 -0.8291 0.8835 10 6 4.2208 -0.6920 -1.2455 11 8 3.5071 -0.4782 -2.2025 12 7 5.5298 -0.3751 -1.2968 13 6 6.0905 0.2281 -2.5085 14 6 6.5760 -0.8590 -3.4323 15 1 6.4728 -1.8957 -3.1476 16 6 7.1464 -0.5303 -4.6438 17 7 7.5706 -1.4790 -5.4499 18 14 7.3179 1.2625 -5.1396 19 1 8.6243 1.7847 -4.6647 20 1 7.2477 1.3758 -6.6187 21 1 6.2179 2.0521 -4.5300 22 6 6.3920 -0.6337 -0.1410 23 6 7.5138 -1.5920 -0.5458 24 6 6.9979 0.6833 0.3481 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 0.6734 -2.5197 0.6155 29 1 1.3402 -2.8211 -1.0184 30 1 2.6494 -3.3754 1.7005 31 1 2.5222 -4.4646 0.2790 32 1 4.1436 -3.1972 -0.9772 33 1 4.8080 -3.0273 0.6807 34 1 6.9249 0.8757 -2.2394 35 1 5.3220 0.8155 -3.0110 36 1 7.9722 -1.2478 -6.3020 37 1 5.8024 -1.0812 0.6591 38 1 8.1033 -1.1441 -1.3458 39 1 8.1550 -1.7848 0.3144 40 1 7.0820 -2.5304 -0.8942 41 1 6.1988 1.3661 0.6364 42 1 7.6397 0.4908 1.2078 43 1 7.5875 1.1312 -0.4519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522281941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = -63.587814 kcal Electronic energy + Delta-G solvation = -24060.019504 eV Core-core repulsion = 20719.594920 eV Total energy + Delta-G solvation = -3340.424584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46441 -38.60653 -37.01267 -35.86796 -32.73489 -32.00703 -30.93039 -30.20454 -29.02441 -27.50038 -26.70321 -23.97270 -22.41475 -21.64575 -21.13194 -19.59848 -17.78993 -17.42940 -16.81813 -16.80071 -15.72478 -15.22495 -14.82191 -14.35488 -14.35131 -13.83771 -13.64520 -13.37438 -13.16013 -12.99506 -12.62179 -12.52000 -12.46356 -12.32299 -12.02095 -11.76642 -11.70093 -11.49993 -11.44518 -11.30338 -10.91985 -10.86804 -10.82642 -10.40179 -10.30801 -10.01751 -9.71103 -9.41947 -9.20432 -8.53306 -8.34203 -7.61619 -6.04090 -4.00573 2.75168 3.03640 3.30616 3.39123 3.42984 3.46662 3.91305 4.40179 4.45267 4.49531 4.79843 4.91014 5.02747 5.11782 5.22976 5.24996 5.30085 5.35140 5.36838 5.49633 5.57674 5.64476 5.66909 5.77129 5.80902 5.81960 5.98865 6.08366 6.15189 6.24393 6.34207 6.37052 6.56752 6.82217 7.01122 7.10756 7.46175 7.61607 7.68614 8.30533 8.38734 8.53492 8.98727 9.08711 9.57797 11.09024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018093 B = 0.005966 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.182194 B = 4692.192262 C = 5002.279489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.530 3.470 3 O -0.537 6.537 4 N -0.602 5.602 5 C 0.100 3.900 6 C -0.130 4.130 7 C -0.121 4.121 8 C 0.116 3.884 9 H 0.091 0.909 10 C 0.508 3.492 11 O -0.530 6.530 12 N -0.585 5.585 13 C 0.217 3.783 14 C -0.518 4.518 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.132 3.868 23 C -0.156 4.156 24 C -0.164 4.164 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.263 0.737 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -3.836 16.647 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.319 3.681 3 O -0.413 6.413 4 N -0.337 5.337 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.159 4.159 8 C 0.009 3.991 9 H 0.109 0.891 10 C 0.293 3.707 11 O -0.406 6.406 12 N -0.317 5.317 13 C 0.096 3.904 14 C -0.556 4.556 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.028 3.972 23 C -0.214 4.214 24 C -0.222 4.222 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.270 -3.071 15.935 18.689 hybrid contribution 0.275 0.814 -0.507 0.998 sum -8.995 -2.257 15.428 18.000 Atomic orbital electron populations 1.21840 0.91515 1.04938 1.04121 1.20403 0.90216 0.82046 0.75433 1.90733 1.70604 1.30634 1.49364 1.48265 1.05540 1.06119 1.73763 1.22360 0.96628 0.81877 1.01402 1.22816 0.94074 0.99248 1.00676 1.22675 0.98374 0.91384 1.03500 1.21582 0.82122 0.97537 0.97879 0.89108 1.20353 0.82431 0.79168 0.88751 1.90648 1.59036 1.53392 1.37520 1.47939 1.07180 1.60992 1.15623 1.19601 0.93912 0.94497 0.82392 1.21333 1.38667 0.94215 1.01413 0.90577 1.24830 0.95118 0.96997 0.96070 1.69892 1.41262 1.32127 1.10547 0.86941 0.78946 0.86269 0.78236 1.20144 1.21038 1.18864 1.21067 0.92511 0.95771 0.87888 1.22143 0.98126 0.99587 1.01513 1.22182 1.01070 0.97690 1.01287 0.89203 0.88934 0.90233 0.90321 0.90895 0.90415 0.89385 0.89407 0.89171 0.95626 0.94451 0.92715 0.90722 0.90025 0.93222 0.92409 0.92705 0.92032 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.67 36.01 0.35 -1.43 16 2 C 0.53 8.73 7.35 -10.98 -0.08 8.65 16 3 O -0.54 -11.47 16.90 5.56 0.09 -11.37 16 4 N -0.60 -9.04 2.75 -164.32 -0.45 -9.49 16 5 C 0.10 1.04 6.27 -2.53 -0.02 1.02 16 6 C -0.13 -1.14 7.09 -24.45 -0.17 -1.32 16 7 C -0.12 -1.50 6.07 -24.77 -0.15 -1.65 16 8 C 0.12 1.87 2.32 -68.10 -0.16 1.72 16 9 H 0.09 1.37 6.69 -51.93 -0.35 1.03 16 10 C 0.51 11.15 6.12 -10.98 -0.07 11.08 16 11 O -0.53 -14.09 15.70 5.56 0.09 -14.00 16 12 N -0.59 -12.65 2.39 -167.47 -0.40 -13.05 16 13 C 0.22 5.52 3.66 -5.19 -0.02 5.50 16 14 C -0.52 -14.79 8.38 -34.44 -0.29 -15.08 16 15 H 0.08 2.34 7.88 -52.48 -0.41 1.93 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 18 Si 0.87 22.20 27.47 -169.99 -4.67 17.53 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 22 C 0.13 2.20 2.99 -67.93 -0.20 1.99 16 23 C -0.16 -2.58 8.48 37.16 0.32 -2.27 16 24 C -0.16 -2.49 9.17 37.16 0.34 -2.15 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.70 7.18 -51.93 -0.37 0.33 16 28 H 0.08 0.57 7.55 -51.93 -0.39 0.18 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.30 7.84 -51.93 -0.41 0.90 16 33 H 0.09 0.92 7.64 -51.93 -0.40 0.52 16 34 H 0.03 0.62 5.85 -51.93 -0.30 0.32 16 35 H 0.04 1.07 6.48 -51.93 -0.34 0.73 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.07 1.04 4.78 -51.93 -0.25 0.79 16 38 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.09 6.66 -51.93 -0.35 0.74 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -37.96 340.02 -6.59 -44.55 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.90 Total: -0.38 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.25 Total: 8.08 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.08 Total: -49.53 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.18 Total: -25.37 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.96 -6.59 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522281941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.040 kcal (2) G-P(sol) polarization free energy of solvation -37.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds