Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47648 * 2 1 4 4 N 1.46500 * 109.47343 * 120.00440 * 2 1 3 5 5 C 1.46509 * 119.99575 * 297.65194 * 4 2 1 6 6 C 1.50702 * 109.46981 * 89.99956 * 5 4 2 7 7 H 1.08000 * 120.00181 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99941 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00033 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00133 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47197 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47437 * 119.99834 * 10 8 6 13 13 H 1.48496 * 109.47205 * 240.00064 * 10 8 6 14 14 C 1.34776 * 120.00848 * 117.65092 * 4 2 1 15 15 O 1.21275 * 120.00625 * 185.14922 * 14 4 2 16 16 C 1.50704 * 119.99320 * 5.14832 * 14 4 2 17 17 C 1.53001 * 109.47026 * 174.49721 * 16 14 4 18 18 H 1.08997 * 109.29788 * 54.58449 * 17 16 14 19 19 C 1.52919 * 109.30450 * 173.96830 * 17 16 14 20 20 C 1.53342 * 108.67420 * 171.06778 * 19 17 16 21 21 C 1.53071 * 108.42499 * 292.46210 * 20 19 17 22 22 C 1.50177 * 109.88643 * 48.90410 * 21 20 19 23 23 O 1.21287 * 118.24312 * 162.39074 * 22 21 20 24 24 N 1.33350 * 123.51248 * 342.41708 * 22 21 20 25 25 H 1.09004 * 109.46548 * 306.24988 * 1 2 3 26 26 H 1.09002 * 109.46861 * 66.24414 * 1 2 3 27 27 H 1.09001 * 109.47475 * 186.24986 * 1 2 3 28 28 H 1.09008 * 109.47209 * 239.99886 * 2 1 3 29 29 H 1.09000 * 109.47275 * 171.96985 * 3 2 1 30 30 H 1.08996 * 109.47019 * 291.97415 * 3 2 1 31 31 H 1.08999 * 109.47020 * 51.96797 * 3 2 1 32 32 H 1.08997 * 109.47190 * 209.99501 * 5 4 2 33 33 H 1.08993 * 109.46840 * 330.00060 * 5 4 2 34 34 H 0.97006 * 119.99894 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.47513 * 294.49817 * 16 14 4 36 36 H 1.09007 * 109.46824 * 54.50173 * 16 14 4 37 37 H 1.09004 * 109.59800 * 290.82195 * 19 17 16 38 38 H 1.08999 * 109.60151 * 51.30669 * 19 17 16 39 39 H 1.09001 * 109.66904 * 172.73456 * 20 19 17 40 40 H 1.08997 * 109.70682 * 52.22024 * 20 19 17 41 41 H 1.08996 * 109.40166 * 288.77589 * 21 20 19 42 42 H 1.09003 * 109.39733 * 169.03148 * 21 20 19 43 43 H 0.97003 * 117.94869 * 182.19821 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7074 -0.1609 2.5262 6 6 0.4142 -0.7601 3.0157 7 1 -0.1226 -1.4647 2.3979 8 6 -0.0843 -0.4079 4.2520 9 7 0.5691 0.4505 5.0043 10 14 -1.6869 -1.1512 4.8593 11 1 -2.2210 -2.0822 3.8330 12 1 -1.4413 -1.8934 6.1217 13 1 -2.6728 -0.0684 5.1054 14 6 2.7537 -1.8134 1.0731 15 8 3.0790 -2.4367 2.0613 16 6 3.1718 -2.2944 -0.2926 17 6 4.1038 -3.4988 -0.1459 18 1 3.6147 -4.2611 0.4605 19 6 4.4053 -4.0762 -1.5295 20 6 5.5081 -5.1326 -1.3910 21 6 6.8068 -4.4268 -0.9927 22 6 6.5511 -3.4986 0.1598 23 8 7.5012 -3.1113 0.8066 24 7 5.3353 -3.0779 0.5106 25 1 -0.3632 0.6077 0.8288 26 1 -0.3633 0.4140 -0.9406 27 1 -0.3634 -1.0215 0.1119 28 1 1.8934 -0.5139 -0.8900 29 1 3.1206 1.4457 0.1436 30 1 1.7987 1.9131 -0.9530 31 1 1.5643 1.9960 0.8095 32 1 2.5109 -0.4174 3.2165 33 1 1.6077 0.9231 2.4712 34 1 0.2186 0.6979 5.8743 35 1 2.2888 -2.5855 -0.8614 36 1 3.6933 -1.4930 -0.8161 37 1 3.5058 -4.5378 -1.9369 38 1 4.7429 -3.2796 -2.1925 39 1 5.6463 -5.6456 -2.3427 40 1 5.2317 -5.8539 -0.6220 41 1 7.1832 -3.8554 -1.8412 42 1 7.5483 -5.1707 -0.7011 43 1 5.2660 -2.4528 1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558250116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = -92.345043 kcal Electronic energy + Delta-G solvation = -23277.013356 eV Core-core repulsion = 19935.341764 eV Total energy + Delta-G solvation = -3341.671591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44222 -39.12183 -36.77630 -35.91127 -33.25683 -32.81541 -31.27611 -30.85287 -28.39021 -26.85862 -26.61255 -23.80243 -22.78091 -22.07583 -21.22686 -19.15452 -18.10324 -17.24202 -16.59032 -16.50154 -16.10168 -15.54575 -15.04270 -14.65443 -14.38734 -14.11619 -13.78596 -13.74520 -13.55894 -13.08866 -13.01313 -12.72808 -12.34378 -11.83212 -11.78887 -11.67929 -11.53063 -11.37081 -11.19615 -11.17025 -11.12532 -10.93012 -10.84932 -10.59276 -10.45541 -10.04891 -9.67154 -9.54605 -8.96504 -8.90292 -8.43300 -7.70875 -6.04370 -4.07639 2.75904 3.28265 3.29220 3.36969 3.39791 3.44277 3.79462 4.42770 4.44624 4.52665 4.55985 4.68145 5.02588 5.04598 5.17940 5.21613 5.30165 5.38401 5.41624 5.50702 5.53044 5.59238 5.59843 5.67590 5.74342 5.83942 5.94062 6.09664 6.12005 6.21655 6.32983 6.55153 6.87869 6.96740 7.07117 7.43226 7.52310 7.55974 7.91803 8.23744 8.35756 8.39131 8.88377 9.03366 9.56547 11.03924 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.004537 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.460287 B = 6170.214851 C = 6566.322199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 C -0.162 4.162 4 N -0.591 5.591 5 C 0.246 3.754 6 C -0.517 4.517 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.500 3.500 15 O -0.539 6.539 16 C -0.157 4.157 17 C 0.155 3.845 18 H 0.086 0.914 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.514 3.486 23 O -0.567 6.567 24 N -0.703 5.703 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -5.650 -18.104 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 C -0.220 4.220 4 N -0.322 5.322 5 C 0.127 3.873 6 C -0.556 4.556 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.211 1.211 14 C 0.286 3.714 15 O -0.417 6.417 16 C -0.198 4.198 17 C 0.050 3.950 18 H 0.104 0.896 19 C -0.170 4.170 20 C -0.161 4.161 21 C -0.174 4.174 22 C 0.301 3.699 23 O -0.447 6.447 24 N -0.356 5.356 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.086 -5.818 -17.238 18.891 hybrid contribution -1.207 -0.010 0.670 1.381 sum 3.879 -5.828 -16.568 17.986 Atomic orbital electron populations 1.22131 0.94655 1.02939 1.01579 1.21015 0.95130 0.93191 0.87849 1.22159 1.01272 0.96485 1.02050 1.48373 1.50257 1.24831 1.08774 1.19257 0.96772 0.94213 0.77092 1.21441 1.06438 1.25665 1.02032 0.92355 1.24928 0.97571 0.95213 0.96492 1.69941 1.38938 1.33339 1.11245 0.86497 0.83366 0.78978 0.78891 1.19872 1.20973 1.21077 1.20293 0.79384 0.81396 0.90340 1.90703 1.56431 1.54900 1.39654 1.22185 1.00881 0.99015 0.97726 1.20737 0.84530 0.96099 0.93683 0.89616 1.21968 1.00011 0.99038 0.96029 1.21654 0.93902 0.98000 1.02551 1.21638 0.99531 0.98940 0.97337 1.20156 0.82606 0.81531 0.85591 1.90753 1.41131 1.58679 1.54136 1.45676 1.05348 1.48012 1.36609 0.90468 0.93278 0.92528 0.90732 0.92753 0.92343 0.91338 0.94219 0.94772 0.92851 0.87869 0.88965 0.89603 0.90796 0.90518 0.90911 0.88497 0.88429 0.75459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.34 37.16 0.31 -2.07 16 2 C 0.13 1.99 3.16 -67.93 -0.21 1.78 16 3 C -0.16 -2.25 8.94 37.16 0.33 -1.92 16 4 N -0.59 -11.56 2.39 -167.46 -0.40 -11.96 16 5 C 0.25 6.14 4.66 -5.19 -0.02 6.11 16 6 C -0.52 -14.03 8.03 -34.44 -0.28 -14.30 16 7 H 0.06 1.58 7.43 -52.49 -0.39 1.19 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.50 9.39 7.20 -10.98 -0.08 9.31 16 15 O -0.54 -12.49 14.40 5.56 0.08 -12.41 16 16 C -0.16 -1.95 3.67 -27.88 -0.10 -2.06 16 17 C 0.16 1.86 2.64 -68.37 -0.18 1.68 16 18 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 19 C -0.13 -1.05 5.30 -26.60 -0.14 -1.19 16 20 C -0.12 -0.94 6.03 -26.52 -0.16 -1.10 16 21 C -0.13 -1.30 6.03 -28.10 -0.17 -1.47 16 22 C 0.51 7.56 7.71 -11.87 -0.09 7.47 16 23 O -0.57 -10.90 17.78 5.55 0.10 -10.81 16 24 N -0.70 -10.34 5.02 -54.85 -0.28 -10.62 16 25 H 0.08 1.41 7.35 -51.93 -0.38 1.03 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 28 H 0.07 0.88 5.79 -51.92 -0.30 0.58 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.10 6.93 -51.93 -0.36 0.74 16 32 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 33 H 0.03 0.87 6.48 -51.93 -0.34 0.53 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 36 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.60 8.13 -51.93 -0.42 0.17 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.41 7.16 7.12 -40.82 -0.29 6.87 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -34.14 342.42 -7.53 -41.67 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.01 Total: 4.13 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.89 Total: 3.81 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.06 Total: -48.12 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.18 Total: -23.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.14 -7.53 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558250116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.678 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds