Wall clock time and date at job start Tue Mar 31 2020 06:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46898 * 2 1 4 4 N 1.46504 * 109.46939 * 119.99904 * 2 1 3 5 5 C 1.46499 * 119.99648 * 295.46509 * 4 2 1 6 6 C 1.50696 * 109.47165 * 90.00604 * 5 4 2 7 7 H 1.08010 * 120.00059 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00403 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00433 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47375 * 270.00338 * 10 8 6 12 12 H 1.48502 * 109.46636 * 150.00131 * 10 8 6 13 13 H 1.48496 * 109.46935 * 30.00890 * 10 8 6 14 14 C 1.34776 * 119.99952 * 115.47096 * 4 2 1 15 15 O 1.21276 * 119.99524 * 185.13839 * 14 4 2 16 16 C 1.50696 * 119.99813 * 5.13381 * 14 4 2 17 17 C 1.53004 * 109.47020 * 185.76671 * 16 14 4 18 18 H 1.08999 * 109.30152 * 304.58945 * 17 16 14 19 19 C 1.52923 * 109.30071 * 185.00233 * 17 16 14 20 20 C 1.53348 * 108.66920 * 188.93913 * 19 17 16 21 21 C 1.53062 * 108.42648 * 67.53115 * 20 19 17 22 22 C 1.50171 * 109.89398 * 311.09693 * 21 20 19 23 23 O 1.21285 * 118.24767 * 197.60718 * 22 21 20 24 24 N 1.33348 * 123.50973 * 17.57924 * 22 21 20 25 25 H 1.09003 * 109.47379 * 305.23041 * 1 2 3 26 26 H 1.09005 * 109.46840 * 65.23165 * 1 2 3 27 27 H 1.08999 * 109.46772 * 185.22540 * 1 2 3 28 28 H 1.09001 * 109.47359 * 239.99734 * 2 1 3 29 29 H 1.09003 * 109.46986 * 174.43117 * 3 2 1 30 30 H 1.08995 * 109.47028 * 294.42478 * 3 2 1 31 31 H 1.09000 * 109.47626 * 54.42789 * 3 2 1 32 32 H 1.09001 * 109.47601 * 330.00106 * 5 4 2 33 33 H 1.09000 * 109.46945 * 209.99933 * 5 4 2 34 34 H 0.96997 * 120.00194 * 179.97438 * 9 8 6 35 35 H 1.08993 * 109.47768 * 305.76884 * 16 14 4 36 36 H 1.08998 * 109.47098 * 65.77212 * 16 14 4 37 37 H 1.08990 * 109.60216 * 308.69053 * 19 17 16 38 38 H 1.08998 * 109.60067 * 69.02052 * 19 17 16 39 39 H 1.09000 * 109.67097 * 187.26693 * 20 19 17 40 40 H 1.09006 * 109.67445 * 307.79311 * 20 19 17 41 41 H 1.09000 * 109.40328 * 71.23202 * 21 20 19 42 42 H 1.09008 * 109.40074 * 190.96750 * 21 20 19 43 43 H 0.96992 * 117.95351 * 177.77852 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7481 -0.1347 2.5245 6 6 0.4461 -0.6871 3.0448 7 1 -0.1234 -1.3823 2.4458 8 6 -0.0181 -0.3049 4.2855 9 7 -1.1546 -0.7865 4.7394 10 14 0.9672 0.8970 5.3218 11 1 1.9158 0.1462 6.1830 12 1 0.0438 1.6878 6.1747 13 1 1.7250 1.8126 4.4316 14 6 2.7162 -1.8372 1.0747 15 8 3.0399 -2.4578 2.0651 16 6 3.0940 -2.3480 -0.2918 17 6 3.7483 -3.7247 -0.1586 18 1 4.5947 -3.6568 0.5248 19 6 4.2422 -4.1844 -1.5309 20 6 4.6893 -5.6476 -1.4269 21 6 3.4540 -6.5137 -1.1681 22 6 2.6448 -5.9275 -0.0471 23 8 1.8279 -6.6358 0.5025 24 7 2.7766 -4.6701 0.3768 25 1 -0.3634 0.5928 0.8394 26 1 -0.3633 0.4306 -0.9332 27 1 -0.3633 -1.0234 0.0936 28 1 1.8934 -0.5139 -0.8900 29 1 3.1254 1.4441 0.0997 30 1 1.7604 1.9267 -0.9357 31 1 1.5975 1.9844 0.8359 32 1 1.6812 0.9511 2.4572 33 1 2.5558 -0.4076 3.2037 34 1 -1.4810 -0.5179 5.6124 35 1 2.1998 -2.4290 -0.9096 36 1 3.7957 -1.6559 -0.7572 37 1 3.4344 -4.0997 -2.2576 38 1 5.0822 -3.5642 -1.8438 39 1 5.1632 -5.9537 -2.3595 40 1 5.3943 -5.7582 -0.6029 41 1 2.8451 -6.5550 -2.0712 42 1 3.7687 -7.5220 -0.8987 43 1 2.1890 -4.3654 1.0859 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558250117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:15 Heat of formation + Delta-G solvation = -86.742324 kcal Electronic energy + Delta-G solvation = -23411.509919 eV Core-core repulsion = 20070.081280 eV Total energy + Delta-G solvation = -3341.428639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.43660 -39.19592 -36.78114 -35.99051 -33.23715 -32.72724 -31.28582 -31.03825 -28.70436 -27.00618 -26.83216 -23.73679 -22.61852 -21.92614 -21.27090 -19.12160 -18.13159 -17.23501 -16.90385 -16.63718 -16.08902 -15.60266 -15.06111 -14.82366 -14.13179 -13.97121 -13.94066 -13.74845 -13.65362 -13.12974 -13.04106 -12.76462 -12.47936 -11.99066 -11.93699 -11.77449 -11.58518 -11.40499 -11.31103 -11.18628 -11.14819 -10.96857 -10.88264 -10.53171 -10.41235 -10.12046 -9.60802 -9.47327 -9.06849 -8.85690 -8.57061 -7.77634 -6.06555 -4.04499 2.82524 3.20809 3.27983 3.33625 3.36152 3.48247 3.68108 4.39843 4.44386 4.48882 4.56082 4.69718 4.98258 5.01788 5.12259 5.19801 5.26098 5.35931 5.40495 5.44026 5.49275 5.53927 5.58400 5.68118 5.72946 5.83040 5.88526 6.04200 6.07930 6.18230 6.27483 6.46156 6.73028 6.91353 6.93065 7.04487 7.31052 7.61520 7.62655 8.19941 8.43813 8.47991 8.86749 8.98572 9.53456 11.06650 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.005099 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.883416 B = 5490.052542 C = 6191.165877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 C -0.162 4.162 4 N -0.586 5.586 5 C 0.215 3.785 6 C -0.522 4.522 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.502 3.498 15 O -0.538 6.538 16 C -0.157 4.157 17 C 0.156 3.844 18 H 0.084 0.916 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.135 4.135 22 C 0.513 3.487 23 O -0.563 6.563 24 N -0.705 5.705 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.114 -0.705 -17.528 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 C -0.220 4.220 4 N -0.318 5.318 5 C 0.095 3.905 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.289 3.711 15 O -0.415 6.415 16 C -0.198 4.198 17 C 0.050 3.950 18 H 0.102 0.898 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.175 4.175 22 C 0.300 3.700 23 O -0.443 6.443 24 N -0.359 5.359 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 11.875 -1.435 -16.717 20.555 hybrid contribution 0.082 0.952 0.906 1.317 sum 11.957 -0.482 -15.811 19.829 Atomic orbital electron populations 1.22145 0.94334 1.03230 1.01787 1.21060 0.95388 0.93077 0.87626 1.22165 1.01046 0.96457 1.02338 1.48057 1.52240 1.23311 1.08143 1.19638 0.97614 0.93879 0.79374 1.21309 1.04303 1.27629 1.02766 0.90553 1.24855 0.94828 0.96102 0.97250 1.69893 1.20297 1.44134 1.19180 0.86909 0.80337 0.81672 0.81078 1.20036 1.21167 1.19204 1.20324 0.79028 0.81226 0.90538 1.90705 1.55328 1.55950 1.39545 1.22186 1.02935 0.97279 0.97381 1.20718 0.91925 0.87136 0.95191 0.89812 1.21961 1.02007 0.96871 0.96199 1.21645 0.97200 0.94323 1.02857 1.21641 0.97038 1.00774 0.98023 1.20141 0.83544 0.81784 0.84538 1.90769 1.37687 1.58219 1.57604 1.45706 1.38549 1.11430 1.40186 0.90291 0.93196 0.92373 0.90409 0.92744 0.92031 0.91496 0.95084 0.94934 0.92630 0.88706 0.87840 0.90750 0.89687 0.90539 0.90967 0.88492 0.88442 0.75073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.42 37.16 0.31 -2.19 16 2 C 0.13 1.94 3.14 -67.93 -0.21 1.72 16 3 C -0.16 -2.07 8.93 37.16 0.33 -1.74 16 4 N -0.59 -11.10 2.39 -167.47 -0.40 -11.50 16 5 C 0.22 5.03 3.77 -5.20 -0.02 5.01 16 6 C -0.52 -14.49 8.56 -34.44 -0.29 -14.78 16 7 H 0.08 2.34 7.80 -52.48 -0.41 1.93 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 10 Si 0.87 21.41 27.47 -169.99 -4.67 16.75 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 14 C 0.50 9.19 7.19 -10.99 -0.08 9.11 16 15 O -0.54 -12.14 14.35 5.56 0.08 -12.06 16 16 C -0.16 -1.90 3.76 -27.88 -0.10 -2.00 16 17 C 0.16 1.85 2.65 -68.37 -0.18 1.67 16 18 H 0.08 1.07 7.88 -51.93 -0.41 0.66 16 19 C -0.13 -1.03 5.30 -26.59 -0.14 -1.17 16 20 C -0.12 -0.93 6.03 -26.52 -0.16 -1.09 16 21 C -0.13 -1.36 6.03 -28.11 -0.17 -1.53 16 22 C 0.51 7.98 7.71 -11.88 -0.09 7.89 16 23 O -0.56 -11.55 17.78 5.55 0.10 -11.45 16 24 N -0.71 -10.91 5.02 -54.85 -0.28 -11.19 16 25 H 0.08 1.49 7.30 -51.93 -0.38 1.12 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 28 H 0.08 0.88 5.76 -51.93 -0.30 0.59 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 32 H 0.03 0.70 5.38 -51.93 -0.28 0.42 16 33 H 0.03 0.82 6.92 -51.93 -0.36 0.46 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 36 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 0.54 8.11 -51.93 -0.42 0.11 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 43 H 0.41 7.84 7.04 -40.82 -0.29 7.55 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -35.56 338.67 -7.16 -42.72 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.97 Total: 5.59 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.91 Total: 2.87 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.10 Total: -49.52 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.18 Total: -23.51 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.56 -7.16 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558250117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.020 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds