Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46869 * 2 1 4 4 H 1.09002 * 109.47401 * 304.99810 * 3 2 1 5 5 C 1.53002 * 109.47535 * 65.00223 * 3 2 1 6 6 C 1.52992 * 109.47214 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47131 * 299.99846 * 6 5 3 8 8 H 1.09004 * 109.46592 * 299.99816 * 7 6 5 9 9 C 1.50700 * 109.47318 * 180.02562 * 7 6 5 10 10 O 1.21279 * 120.00113 * 239.99809 * 9 7 6 11 11 N 1.34784 * 119.99961 * 59.99577 * 9 7 6 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.47011 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99820 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99914 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99647 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00062 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99676 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00283 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46978 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47000 * 120.00092 * 20 18 16 23 23 H 1.48501 * 109.47339 * 240.00210 * 20 18 16 24 24 C 1.52992 * 109.47303 * 59.99857 * 7 6 5 25 25 C 1.53005 * 109.46589 * 184.99791 * 3 2 1 26 26 H 1.09002 * 109.47340 * 59.99943 * 1 2 3 27 27 H 1.09005 * 109.47429 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46977 * 300.00389 * 1 2 3 29 29 H 1.08995 * 109.47060 * 239.99686 * 2 1 3 30 30 H 1.09003 * 109.46478 * 119.99748 * 2 1 3 31 31 H 1.09005 * 109.46767 * 299.99750 * 5 3 2 32 32 H 1.08993 * 109.47262 * 59.99135 * 5 3 2 33 33 H 1.08996 * 109.47453 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47560 * 59.99686 * 6 5 3 35 35 H 0.96995 * 120.00015 * 359.72695 * 11 9 7 36 36 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 37 37 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 38 38 H 0.97000 * 120.00556 * 359.97438 * 15 13 12 39 39 H 0.96998 * 119.99972 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.47330 * 60.00411 * 24 7 6 41 41 H 1.09005 * 109.47124 * 180.02562 * 24 7 6 42 42 H 1.08998 * 109.47134 * 60.00151 * 25 3 2 43 43 H 1.08999 * 109.47484 * 299.99367 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 2.1457 3.5688 1.3075 7 6 3.6706 3.5701 1.1821 8 1 4.1048 3.0309 2.0240 9 6 4.1736 4.9907 1.1829 10 8 4.7946 5.4147 0.2314 11 7 3.9332 5.7901 2.2412 12 6 4.4216 7.1712 2.2416 13 6 4.0236 7.8444 3.5299 14 8 3.3943 7.2306 4.3656 15 7 4.3669 9.1283 3.7534 16 6 4.0044 9.7408 4.9252 17 1 3.4433 9.1945 5.6690 18 6 4.3588 11.0644 5.1559 19 7 5.0411 11.7293 4.2507 20 14 3.8642 11.8992 6.7521 21 1 3.1072 10.9414 7.5977 22 1 5.0820 12.3430 7.4766 23 1 3.0105 13.0765 6.4513 24 6 4.0754 2.8860 -0.1251 25 6 3.5648 1.4442 -0.1257 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5876 2.1491 33 1 1.8571 4.0564 2.2387 34 1 1.7115 4.1082 0.4657 35 1 3.4331 5.4523 3.0005 36 1 5.5080 7.1725 2.1520 37 1 3.9870 7.7107 1.4001 38 1 4.8706 9.6191 3.0853 39 1 5.2881 12.6534 4.4116 40 1 3.6412 3.4253 -0.9671 41 1 5.1618 2.8866 -0.2143 42 1 3.8532 0.9569 -1.0570 43 1 3.9995 0.9053 0.7162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573750851.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -118.110989 kcal Electronic energy + Delta-G solvation = -22001.288528 eV Core-core repulsion = 18658.499642 eV Total energy + Delta-G solvation = -3342.788886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17738 -38.59993 -37.84161 -34.46317 -34.08311 -33.66090 -31.40065 -30.96116 -29.63770 -27.54325 -24.88338 -23.95758 -22.79410 -21.40343 -20.12969 -19.77356 -19.46588 -18.12086 -17.18417 -15.95475 -15.58119 -15.32761 -14.97369 -14.92161 -14.50958 -14.23774 -14.08395 -13.90077 -13.68909 -13.48504 -13.11210 -12.86288 -12.31292 -12.15940 -12.04021 -11.87612 -11.79244 -11.63903 -11.36829 -11.23102 -11.14813 -10.95927 -10.66852 -10.42793 -10.41598 -10.33297 -10.09659 -9.65658 -9.50449 -8.76369 -8.63808 -8.11097 -6.52420 -3.94448 2.86194 3.09602 3.21494 3.27572 3.42284 3.73332 4.10763 4.43552 4.47182 4.57213 4.85103 4.86382 4.88251 5.00989 5.13679 5.16322 5.23820 5.29829 5.32601 5.37628 5.41727 5.49275 5.67226 5.70263 5.75392 5.85425 5.90262 5.94966 5.96231 6.00671 6.01319 6.06859 6.10600 6.13836 6.23696 6.35088 6.71370 7.45313 7.84576 7.91561 8.43472 8.49826 9.03787 9.38559 9.86333 10.64573 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036176 B = 0.002785 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.812134 B =10050.260490 C =10635.177287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.104 4.104 8 H 0.096 0.904 9 C 0.513 3.487 10 O -0.551 6.551 11 N -0.707 5.707 12 C 0.108 3.892 13 C 0.428 3.572 14 O -0.597 6.597 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.098 4.098 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 -19.209 -8.297 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.125 4.125 8 H 0.114 0.886 9 C 0.299 3.701 10 O -0.429 6.429 11 N -0.361 5.361 12 C -0.020 4.020 13 C 0.214 3.786 14 O -0.484 6.484 15 N -0.185 5.185 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.136 4.136 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.248 0.752 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.877 -19.070 -8.392 21.399 hybrid contribution -0.053 0.806 0.750 1.102 sum -4.931 -18.264 -7.643 20.404 Atomic orbital electron populations 1.21834 0.96015 1.01355 1.02023 1.21567 0.95823 0.96469 1.01826 1.21240 0.95634 0.95692 0.98322 0.91118 1.21624 1.00864 0.95020 0.97498 1.21551 0.93026 0.97567 1.02931 1.21321 0.97376 0.92869 1.00919 0.88626 1.20642 0.79588 0.87716 0.82112 1.90671 1.41289 1.76117 1.34831 1.45764 1.57062 1.12215 1.21080 1.20949 1.00187 0.82885 0.97985 1.19764 0.86285 0.83721 0.88825 1.90493 1.45620 1.64714 1.47590 1.41814 1.48323 1.09539 1.18780 1.19781 1.33345 0.94747 0.95503 0.87627 1.25334 0.96521 0.96565 0.99363 1.69621 1.37816 1.11452 1.34597 0.85755 0.78342 0.79035 0.80943 1.19128 1.20609 1.20601 1.21317 1.01390 0.94714 0.96131 1.21607 0.95069 0.96596 1.01862 0.92826 0.93065 0.92372 0.92174 0.92050 0.91409 0.91722 0.91001 0.91374 0.75161 0.89938 0.89958 0.77040 0.91632 0.91230 0.91260 0.91808 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.97 16 3 C -0.09 -0.72 2.19 -90.62 -0.20 -0.92 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 5 C -0.11 -0.94 4.96 -26.73 -0.13 -1.08 16 6 C -0.11 -1.16 5.10 -26.73 -0.14 -1.30 16 7 C -0.10 -1.20 2.52 -91.77 -0.23 -1.43 16 8 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 9 C 0.51 8.06 7.15 -10.98 -0.08 7.98 16 10 O -0.55 -10.38 15.98 5.56 0.09 -10.29 16 11 N -0.71 -11.80 5.42 -61.47 -0.33 -12.14 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 C 0.43 9.86 7.85 -10.98 -0.09 9.77 16 14 O -0.60 -15.28 15.24 5.55 0.08 -15.19 16 15 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.95 13.05 55.50 0.72 -23.23 16 20 Si 0.93 20.54 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.10 -1.06 4.49 -26.76 -0.12 -1.18 16 25 C -0.11 -0.95 5.20 -26.75 -0.14 -1.09 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.77 7.56 -51.93 -0.39 0.37 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.41 6.71 6.85 -40.82 -0.28 6.43 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 9.50 7.90 -40.82 -0.32 9.17 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -30.46 346.54 -7.58 -38.04 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.10 Total: 12.58 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.18 Total: 3.24 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.33 Total: -49.12 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.17 Total: -25.48 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.46 -7.58 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573750851.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.070 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds