Wall clock time and date at job start Tue Mar 31 2020 06:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47431 * 2 1 4 4 H 1.09005 * 109.46901 * 305.00482 * 3 2 1 5 5 C 1.53003 * 109.46773 * 65.00124 * 3 2 1 6 6 C 1.52994 * 109.47473 * 185.00046 * 3 2 1 7 7 C 1.52993 * 109.47044 * 174.26910 * 6 3 2 8 8 H 1.09003 * 110.65695 * 57.08184 * 7 6 3 9 9 N 1.47316 * 110.49906 * 180.02562 * 7 6 3 10 10 C 1.34521 * 106.62012 * 118.82733 * 9 7 6 11 11 O 1.21535 * 123.77326 * 179.77194 * 10 9 7 12 12 N 1.33796 * 112.45820 * 359.76399 * 10 9 7 13 13 C 1.46504 * 124.17731 * 179.97438 * 12 10 9 14 14 C 1.52990 * 109.47159 * 270.04130 * 13 12 10 15 15 C 1.53003 * 109.47222 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47231 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00198 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99621 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00163 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99678 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47138 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47149 * 119.99843 * 20 18 16 23 23 H 1.48496 * 109.47126 * 240.00299 * 20 18 16 24 24 C 1.34765 * 111.64118 * 0.02562 * 12 10 9 25 25 O 1.21241 * 127.15618 * 179.97438 * 24 12 10 26 26 H 1.08998 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46998 * 299.99766 * 1 2 3 28 28 H 1.08991 * 109.47257 * 60.00182 * 1 2 3 29 29 H 1.09011 * 109.47442 * 240.00164 * 2 1 3 30 30 H 1.08998 * 109.47607 * 120.00394 * 2 1 3 31 31 H 1.08993 * 109.47392 * 59.49052 * 5 3 2 32 32 H 1.09000 * 109.46867 * 179.49323 * 5 3 2 33 33 H 1.09002 * 109.46899 * 299.49179 * 5 3 2 34 34 H 1.09006 * 109.46784 * 54.27264 * 6 3 2 35 35 H 1.09002 * 109.47213 * 294.27165 * 6 3 2 36 36 H 0.97007 * 126.69185 * 298.55521 * 9 7 6 37 37 H 1.09000 * 109.46845 * 30.04659 * 13 12 10 38 38 H 1.09004 * 109.46677 * 150.04211 * 13 12 10 39 39 H 1.08994 * 109.47677 * 300.00460 * 14 13 12 40 40 H 1.09004 * 109.47260 * 60.00438 * 14 13 12 41 41 H 1.08994 * 109.47290 * 300.00843 * 15 14 13 42 42 H 1.09004 * 109.46526 * 60.00135 * 15 14 13 43 43 H 0.97004 * 119.99929 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0629 2.8838 -0.2694 8 1 3.7361 3.4899 0.5755 9 7 5.5306 2.9119 -0.3929 10 6 5.8055 3.4592 -1.5906 11 8 6.9324 3.6352 -2.0104 12 7 4.6997 3.7881 -2.2682 13 6 4.7016 4.4013 -3.5988 14 6 4.7229 5.9246 -3.4582 15 6 4.7256 6.5650 -4.8478 16 6 4.7459 8.0655 -4.7093 17 1 4.7564 8.5172 -3.7284 18 6 4.7512 8.8616 -5.8351 19 7 4.7379 8.3115 -7.0295 20 14 4.7771 10.7215 -5.6635 21 1 4.7885 11.0857 -4.2238 22 1 5.9939 11.2624 -6.3209 23 1 3.5691 11.2951 -6.3091 24 6 3.5840 3.4865 -1.5751 25 8 2.4360 3.6644 -1.9220 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0624 1.5822 2.1496 32 1 2.0064 3.1514 1.3113 33 1 0.5486 2.1332 1.3926 34 1 3.8576 0.8692 -1.0042 35 1 4.0034 0.9953 0.7654 36 1 6.1736 2.6005 0.2633 37 1 5.5846 4.0746 -4.1481 38 1 3.8048 4.0988 -4.1395 39 1 3.8401 6.2512 -2.9089 40 1 5.6198 6.2271 -2.9175 41 1 5.6087 6.2383 -5.3967 42 1 3.8290 6.2625 -5.3888 43 1 4.7420 8.8717 -7.8215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578892227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:48 Heat of formation + Delta-G solvation = -78.532490 kcal Electronic energy + Delta-G solvation = -22528.366767 eV Core-core repulsion = 19187.294133 eV Total energy + Delta-G solvation = -3341.072634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.39163 -38.64920 -37.49830 -35.96950 -35.42869 -33.42531 -31.54881 -31.08165 -28.41157 -27.29829 -25.88659 -23.93212 -23.38946 -21.99549 -20.90849 -20.28040 -19.74834 -18.00608 -17.14797 -16.47720 -16.10663 -15.68227 -15.40106 -15.14805 -14.89500 -14.39972 -14.15569 -14.00482 -13.96106 -13.73378 -13.30744 -12.86381 -12.47206 -12.26605 -12.16468 -12.04573 -11.65915 -11.47305 -11.24253 -11.00560 -10.91209 -10.85078 -10.82016 -10.72825 -10.49877 -10.01463 -9.77044 -9.73279 -9.52985 -9.28154 -8.98066 -8.33890 -5.98707 -4.00768 1.67351 2.32406 3.08267 3.12785 3.33196 3.40311 3.44949 3.87902 4.30260 4.45571 4.48031 4.60120 4.69975 4.90887 5.05005 5.19794 5.27290 5.28685 5.36400 5.37637 5.45158 5.56459 5.66125 5.69938 5.73157 5.76555 5.78403 5.80692 5.88168 6.02662 6.12703 6.19160 6.53168 6.70787 6.76126 7.02516 7.18563 7.46668 7.65989 7.79131 7.99929 8.19353 8.42648 9.05238 9.63060 11.12795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.003422 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.504194 B = 8179.703173 C = 8768.403598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.105 4.105 4 H 0.095 0.905 5 C -0.149 4.149 6 C -0.110 4.110 7 C 0.090 3.910 8 H 0.126 0.874 9 N -0.731 5.731 10 C 0.700 3.300 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.115 3.885 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.522 3.478 25 O -0.461 6.461 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.437 0.563 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -18.081 17.916 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.124 4.124 4 H 0.113 0.887 5 C -0.206 4.206 6 C -0.149 4.149 7 C -0.019 4.019 8 H 0.143 0.857 9 N -0.396 5.396 10 C 0.400 3.600 11 O -0.411 6.411 12 N -0.317 5.317 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.012 4.012 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.308 3.692 25 O -0.331 6.331 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.280 0.720 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.972 -17.787 17.179 25.224 hybrid contribution 0.353 0.960 0.326 1.074 sum -4.619 -16.827 17.506 24.717 Atomic orbital electron populations 1.21815 0.95684 1.01436 1.02248 1.21525 0.96199 0.95808 1.01803 1.21348 0.93632 0.97128 1.00324 0.88722 1.21917 1.01922 1.00283 0.96501 1.21804 0.96725 0.92698 1.03634 1.22207 0.81393 0.99880 0.98463 0.85704 1.45567 1.07232 1.67231 1.19521 1.15947 0.84569 0.78194 0.81244 1.91024 1.20460 1.58405 1.71224 1.46635 1.07429 1.57036 1.20552 1.22099 1.04240 0.95596 0.78518 1.22001 1.01101 0.90599 1.02436 1.19035 0.97570 0.95219 0.89421 1.21225 1.50531 0.91407 0.92532 0.92660 1.25015 0.95296 0.98799 0.95342 1.69968 1.50878 1.35165 0.97401 0.86522 0.77571 0.85680 0.78157 1.19761 1.20978 1.20990 1.20766 0.85186 0.77187 0.86023 1.90781 1.17885 1.51044 1.73367 0.92967 0.92443 0.92457 0.92053 0.92125 0.92776 0.92595 0.92086 0.90794 0.89891 0.71958 0.88897 0.89064 0.92868 0.92612 0.96144 0.96222 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.79 5.40 -26.73 -0.14 -0.94 16 3 C -0.11 -0.82 2.28 -90.62 -0.21 -1.03 16 4 H 0.09 0.99 5.91 -51.93 -0.31 0.68 16 5 C -0.15 -1.01 8.73 37.16 0.32 -0.68 16 6 C -0.11 -0.79 4.55 -26.74 -0.12 -0.92 16 7 C 0.09 0.83 3.57 -68.21 -0.24 0.58 16 8 H 0.13 0.94 6.53 -51.93 -0.34 0.60 16 9 N -0.73 -7.25 6.24 -59.19 -0.37 -7.62 16 10 C 0.70 10.54 8.62 -88.02 -0.76 9.78 16 11 O -0.54 -10.15 17.48 5.33 0.09 -10.05 16 12 N -0.57 -8.94 2.60 -120.73 -0.31 -9.25 16 13 C 0.11 2.07 5.70 -4.04 -0.02 2.05 16 14 C -0.12 -2.65 5.48 -26.73 -0.15 -2.80 16 15 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 16 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 C 0.52 7.21 7.45 -10.56 -0.08 7.13 16 25 O -0.46 -7.41 15.78 5.59 0.09 -7.32 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.37 6.58 -51.93 -0.34 0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 6.53 -51.93 -0.34 0.05 16 33 H 0.06 0.42 6.59 -51.93 -0.34 0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.44 3.04 8.96 -40.82 -0.37 2.68 16 37 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 38 H 0.09 1.59 8.00 -51.93 -0.42 1.17 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 349.82 15.07 5.27 5.27 Total: -1.00 -33.80 349.82 -8.15 -41.95 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.05 Total: -2.74 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.59 Total: -0.81 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.05 Total: -43.37 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.80 -8.15 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.582 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds