Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47509 * 2 1 4 4 H 1.08995 * 109.47176 * 305.00246 * 3 2 1 5 5 C 1.53002 * 109.47013 * 65.00220 * 3 2 1 6 6 C 1.53003 * 109.47243 * 184.99896 * 3 2 1 7 7 C 1.53007 * 109.46838 * 175.00166 * 6 3 2 8 8 H 1.08997 * 110.53767 * 56.37718 * 7 6 3 9 9 N 1.47308 * 110.59673 * 293.54550 * 7 6 3 10 10 C 1.34527 * 106.62002 * 241.32208 * 9 7 6 11 11 O 1.21538 * 123.77410 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45669 * 0.02562 * 10 9 7 13 13 C 1.46500 * 124.17647 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47473 * 90.02394 * 13 12 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99923 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46794 * 89.99626 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99610 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99723 * 20 18 16 24 24 C 1.34763 * 111.64670 * 0.23007 * 12 10 9 25 25 O 1.21233 * 127.16043 * 179.73673 * 24 12 10 26 26 H 1.08993 * 109.47615 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47085 * 299.99998 * 1 2 3 28 28 H 1.09008 * 109.46936 * 59.99580 * 1 2 3 29 29 H 1.09004 * 109.47085 * 240.00002 * 2 1 3 30 30 H 1.08999 * 109.47511 * 120.00411 * 2 1 3 31 31 H 1.08995 * 109.47128 * 59.99996 * 5 3 2 32 32 H 1.08997 * 109.47014 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46673 * 299.99661 * 5 3 2 34 34 H 1.09005 * 109.46707 * 55.00408 * 6 3 2 35 35 H 1.08995 * 109.47315 * 295.00145 * 6 3 2 36 36 H 0.97003 * 126.69132 * 61.35920 * 9 7 6 37 37 H 1.09002 * 109.47129 * 330.02136 * 13 12 10 38 38 H 1.08998 * 109.46845 * 210.02943 * 13 12 10 39 39 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 41 41 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 42 42 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 43 43 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 1 3.7269 3.4819 0.5961 9 7 3.6115 3.4821 -1.5192 10 6 4.7197 3.7960 -2.2143 11 8 4.7037 4.3110 -3.3150 12 7 5.8416 3.4777 -1.5584 13 6 7.1920 3.7067 -2.0784 14 6 7.6760 5.0929 -1.6482 15 6 9.0860 5.3321 -2.1919 16 6 9.5625 6.6978 -1.7687 17 1 8.9236 7.3314 -1.1714 18 6 10.8143 7.1378 -2.1432 19 7 11.2299 8.3298 -1.7743 20 14 11.9195 6.0414 -3.1757 21 1 11.6693 6.3025 -4.6160 22 1 13.3409 6.3329 -2.8594 23 1 11.6268 4.6175 -2.8726 24 6 5.5760 2.9156 -0.3628 25 8 6.3789 2.5188 0.4544 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0699 1.5874 2.1491 32 1 1.9983 3.1542 1.3072 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8799 -1.0114 35 1 4.0030 0.9834 0.7596 36 1 2.6932 3.6222 -1.7984 37 1 7.1769 3.6486 -3.1667 38 1 7.8669 2.9474 -1.6834 39 1 7.6910 5.1509 -0.5599 40 1 7.0010 5.8521 -2.0433 41 1 9.7612 4.5729 -1.7972 42 1 9.0705 5.2742 -3.2801 43 1 12.1108 8.6391 -2.0375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578892228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -75.484482 kcal Electronic energy + Delta-G solvation = -22362.485238 eV Core-core repulsion = 19021.544776 eV Total energy + Delta-G solvation = -3340.940462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.43568 -38.55792 -37.91313 -35.92318 -35.52309 -33.43747 -31.70420 -31.15665 -28.72827 -27.69738 -26.08894 -23.83869 -23.48403 -22.03252 -20.74310 -20.34136 -19.84304 -18.06719 -17.18796 -16.77422 -16.29311 -15.68530 -15.47283 -15.40118 -15.09700 -14.25681 -14.14832 -14.12193 -14.06631 -13.93369 -13.39798 -12.90273 -12.75193 -12.42769 -12.32220 -12.18238 -11.79227 -11.68085 -11.38094 -11.26402 -11.06244 -10.97503 -10.83024 -10.80779 -10.25157 -10.05755 -9.93873 -9.76841 -9.61055 -9.32865 -9.13980 -8.51723 -6.01998 -4.00324 1.61818 2.26495 3.03860 3.07229 3.33768 3.40609 3.43965 3.83782 4.16090 4.35437 4.47092 4.47474 4.56295 4.79142 4.92976 5.05088 5.10240 5.14884 5.25448 5.31855 5.35915 5.44832 5.55841 5.58622 5.59578 5.62158 5.64674 5.66495 5.69928 5.87686 5.94376 5.96048 6.39229 6.55990 6.66823 6.81688 7.11026 7.25679 7.39442 7.40569 7.79324 8.14463 8.55503 9.02282 9.59763 11.11482 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037980 B = 0.003095 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.049442 B = 9045.291066 C = 9163.871983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.156 4.156 6 C -0.115 4.115 7 C 0.091 3.909 8 H 0.127 0.873 9 N -0.727 5.727 10 C 0.701 3.299 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.113 3.887 14 C -0.116 4.116 15 C -0.010 4.010 16 C -0.519 4.519 17 H 0.071 0.929 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.522 3.478 25 O -0.465 6.465 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.436 0.564 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.416 -17.735 4.566 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.090 0.910 5 C -0.213 4.213 6 C -0.153 4.153 7 C -0.017 4.017 8 H 0.145 0.855 9 N -0.393 5.393 10 C 0.401 3.599 11 O -0.411 6.411 12 N -0.317 5.317 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.048 4.048 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C 0.309 3.691 25 O -0.334 6.334 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.280 0.720 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.692 -17.539 4.376 28.237 hybrid contribution 0.266 -0.266 -0.623 0.728 sum -21.427 -17.805 3.752 28.111 Atomic orbital electron populations 1.21823 0.95714 1.01654 1.01970 1.21558 0.96036 0.95806 1.02311 1.21152 0.93936 0.96957 0.98838 0.90951 1.21995 1.01744 1.00549 0.96988 1.21879 0.96372 0.92860 1.04202 1.22175 0.92099 0.97854 0.89621 0.85528 1.45560 1.08211 1.66387 1.19120 1.15926 0.80992 0.78865 0.84076 1.91027 1.85574 1.46328 1.18206 1.46569 1.09313 1.56586 1.19214 1.22091 0.77560 1.00630 1.00422 1.21821 0.99568 0.92977 1.01030 1.19504 0.91258 0.98009 0.96000 1.21077 1.01303 0.99505 1.33843 0.91073 1.25031 0.97815 0.94945 0.95743 1.69916 1.19615 1.18243 1.46472 0.86759 0.79801 0.81732 0.80899 1.20228 1.21380 1.18925 1.20794 0.90818 0.76296 0.81231 1.90812 1.54474 1.44995 1.43126 0.92822 0.92393 0.92747 0.91880 0.91688 0.92157 0.92428 0.92119 0.90610 0.89117 0.71956 0.88893 0.89088 0.92242 0.91985 0.96275 0.96623 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.67 37.15 0.36 -0.35 16 2 C -0.12 -0.60 5.40 -26.74 -0.14 -0.74 16 3 C -0.09 -0.46 2.34 -90.62 -0.21 -0.67 16 4 H 0.07 0.35 7.25 -51.93 -0.38 -0.03 16 5 C -0.16 -0.74 8.72 37.16 0.32 -0.42 16 6 C -0.11 -0.77 4.44 -26.73 -0.12 -0.89 16 7 C 0.09 0.80 3.49 -68.20 -0.24 0.56 16 8 H 0.13 0.90 6.48 -51.93 -0.34 0.57 16 9 N -0.73 -6.88 5.95 -59.19 -0.35 -7.23 16 10 C 0.70 10.10 8.62 -88.02 -0.76 9.35 16 11 O -0.54 -9.80 17.48 5.33 0.09 -9.70 16 12 N -0.57 -8.55 2.60 -120.73 -0.31 -8.87 16 13 C 0.11 1.91 5.70 -4.04 -0.02 1.89 16 14 C -0.12 -2.39 5.48 -26.73 -0.15 -2.54 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -28.42 13.96 55.43 0.77 -27.64 16 20 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C 0.52 7.00 7.65 -10.55 -0.08 6.92 16 25 O -0.46 -7.49 17.75 5.60 0.10 -7.39 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.25 6.57 -51.93 -0.34 -0.09 16 28 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.27 6.51 -51.93 -0.34 -0.07 16 33 H 0.06 0.26 6.57 -51.92 -0.34 -0.08 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.44 2.99 8.31 -40.82 -0.34 2.65 16 37 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 38 H 0.09 1.46 8.00 -51.93 -0.42 1.05 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -34.63 348.53 -7.75 -42.38 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -7.05 Total: -3.28 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.58 Total: -0.93 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.11 Total: -43.74 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.19 Total: -17.09 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.63 -7.75 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.104 kcal (2) G-P(sol) polarization free energy of solvation -34.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds