Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47509 * 2 1 4 4 H 1.08995 * 109.47176 * 305.00246 * 3 2 1 5 5 C 1.53002 * 109.47013 * 65.00220 * 3 2 1 6 6 C 1.53003 * 109.47243 * 184.99896 * 3 2 1 7 7 C 1.53007 * 109.46838 * 175.00166 * 6 3 2 8 8 H 1.08997 * 110.53767 * 56.37718 * 7 6 3 9 9 N 1.47308 * 110.59673 * 293.54550 * 7 6 3 10 10 C 1.34527 * 106.62002 * 241.32208 * 9 7 6 11 11 O 1.21538 * 123.77410 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45669 * 0.02562 * 10 9 7 13 13 C 1.46500 * 124.17647 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47473 * 90.02394 * 13 12 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99923 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00006 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46794 * 89.99626 * 20 18 16 22 22 H 1.48502 * 109.47140 * 209.99610 * 20 18 16 23 23 H 1.48501 * 109.46982 * 329.99723 * 20 18 16 24 24 C 1.34763 * 111.64670 * 0.23007 * 12 10 9 25 25 O 1.21233 * 127.16043 * 179.73673 * 24 12 10 26 26 H 1.08993 * 109.47615 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47085 * 299.99998 * 1 2 3 28 28 H 1.09008 * 109.46936 * 59.99580 * 1 2 3 29 29 H 1.09004 * 109.47085 * 240.00002 * 2 1 3 30 30 H 1.08999 * 109.47511 * 120.00411 * 2 1 3 31 31 H 1.08995 * 109.47128 * 59.99996 * 5 3 2 32 32 H 1.08997 * 109.47014 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46673 * 299.99661 * 5 3 2 34 34 H 1.09005 * 109.46707 * 55.00408 * 6 3 2 35 35 H 1.08995 * 109.47315 * 295.00145 * 6 3 2 36 36 H 0.97003 * 126.69132 * 61.35920 * 9 7 6 37 37 H 1.09002 * 109.47129 * 330.02136 * 13 12 10 38 38 H 1.08998 * 109.46845 * 210.02943 * 13 12 10 39 39 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 40 40 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 41 41 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 42 42 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 43 43 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4442 -0.1257 7 6 4.0646 2.8849 -0.2511 8 1 3.7269 3.4819 0.5961 9 7 3.6115 3.4821 -1.5192 10 6 4.7197 3.7960 -2.2143 11 8 4.7037 4.3110 -3.3150 12 7 5.8416 3.4777 -1.5584 13 6 7.1920 3.7067 -2.0784 14 6 7.6760 5.0929 -1.6482 15 6 9.0860 5.3321 -2.1919 16 6 9.5625 6.6978 -1.7687 17 1 8.9236 7.3314 -1.1714 18 6 10.8143 7.1378 -2.1432 19 7 11.2299 8.3298 -1.7743 20 14 11.9195 6.0414 -3.1757 21 1 11.6693 6.3025 -4.6160 22 1 13.3409 6.3329 -2.8594 23 1 11.6268 4.6175 -2.8726 24 6 5.5760 2.9156 -0.3628 25 8 6.3789 2.5188 0.4544 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.0699 1.5874 2.1491 32 1 1.9983 3.1542 1.3072 33 1 0.5489 2.1252 1.3969 34 1 3.8570 0.8799 -1.0114 35 1 4.0030 0.9834 0.7596 36 1 2.6932 3.6222 -1.7984 37 1 7.1769 3.6486 -3.1667 38 1 7.8669 2.9474 -1.6834 39 1 7.6910 5.1509 -0.5599 40 1 7.0010 5.8521 -2.0433 41 1 9.7612 4.5729 -1.7972 42 1 9.0705 5.2742 -3.2801 43 1 12.1108 8.6391 -2.0375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578892228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = -98.848505 kcal Electronic energy + Delta-G solvation = -22363.498378 eV Core-core repulsion = 19021.544776 eV Total energy + Delta-G solvation = -3341.953602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.50536 -39.71486 -38.57545 -37.16201 -36.69766 -35.18808 -33.47773 -31.86792 -29.62038 -29.07620 -26.80904 -25.39634 -24.40893 -22.93386 -22.23136 -21.56011 -20.54916 -19.19293 -18.85697 -18.20277 -17.40408 -16.71187 -16.51814 -16.19301 -16.06061 -15.86537 -15.76701 -15.25358 -14.90755 -14.78874 -14.62056 -14.13548 -13.79212 -13.49349 -13.43163 -13.09231 -12.80808 -12.66124 -12.62341 -12.40242 -12.15394 -11.91342 -11.83928 -11.68800 -11.60167 -11.46426 -11.44852 -11.36615 -11.09090 -10.79407 -10.78221 -10.42770 -8.31051 -6.36406 0.54919 1.17562 1.36869 1.39007 1.51095 1.92415 2.15730 2.36054 2.90562 3.04156 3.54267 3.73493 3.92780 3.99386 4.04623 4.08961 4.26648 4.31592 4.39626 4.41542 4.51982 4.66753 4.74591 4.78180 4.85468 4.89328 4.94462 4.94660 4.98513 5.22905 5.24671 5.27602 5.29568 5.36545 5.47074 5.56750 5.60755 5.61573 5.80091 6.04272 6.23899 6.34510 6.70392 7.08446 7.27907 8.85988 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037980 B = 0.003095 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.049442 B = 9045.291066 C = 9163.871983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.080 0.920 5 C -0.157 4.157 6 C -0.108 4.108 7 C 0.105 3.895 8 H 0.154 0.846 9 N -0.700 5.700 10 C 0.697 3.303 11 O -0.581 6.581 12 N -0.579 5.579 13 C 0.121 3.879 14 C -0.104 4.104 15 C -0.007 4.007 16 C -0.536 4.536 17 H 0.026 0.974 18 C 0.002 3.998 19 N -0.952 5.952 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.241 1.241 24 C 0.517 3.483 25 O -0.494 6.494 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.452 0.548 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.026 0.974 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.526 -20.059 4.286 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.214 4.214 6 C -0.146 4.146 7 C -0.003 4.003 8 H 0.171 0.829 9 N -0.366 5.366 10 C 0.398 3.602 11 O -0.457 6.457 12 N -0.324 5.324 13 C 0.000 4.000 14 C -0.142 4.142 15 C -0.045 4.045 16 C -0.574 4.574 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.593 5.593 20 Si 0.777 3.223 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.164 1.164 24 C 0.306 3.694 25 O -0.365 6.365 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.299 0.701 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.878 -19.890 4.129 30.595 hybrid contribution 0.538 0.521 -0.435 0.866 sum -22.340 -19.369 3.694 29.797 Atomic orbital electron populations 1.21819 0.95361 1.01776 1.02174 1.21548 0.96313 0.95618 1.02214 1.21122 0.92443 0.97288 0.99442 0.90214 1.22015 1.02221 1.00561 0.96618 1.21884 0.97556 0.90882 1.04312 1.22319 0.88512 0.99785 0.89709 0.82888 1.45441 1.07799 1.64819 1.18548 1.16050 0.81748 0.78648 0.83745 1.91001 1.86168 1.48419 1.20111 1.46571 1.08850 1.56957 1.20065 1.21789 0.79129 0.98209 1.00850 1.21585 0.97519 0.95171 0.99942 1.19436 0.93261 0.95185 0.96613 1.21429 1.01177 1.01431 1.33405 0.95548 1.26092 0.99638 0.96582 0.97194 1.70076 1.20457 1.20542 1.48189 0.85588 0.77188 0.80493 0.78988 1.19060 1.20848 1.16369 1.21508 0.92707 0.75117 0.80089 1.90797 1.55852 1.46137 1.43729 0.92815 0.92034 0.92686 0.92181 0.91662 0.92217 0.92163 0.91522 0.90899 0.88727 0.70078 0.88361 0.87885 0.93448 0.93731 0.95180 0.95554 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 71.98 0.70 -0.39 16 2 C -0.12 -0.92 5.40 30.59 0.17 -0.75 16 3 C -0.08 -0.62 2.34 -10.79 -0.03 -0.64 16 4 H 0.08 0.49 7.25 -2.39 -0.02 0.48 16 5 C -0.16 -1.03 8.72 71.98 0.63 -0.41 16 6 C -0.11 -1.16 4.44 30.60 0.14 -1.03 16 7 C 0.10 1.57 3.49 44.38 0.15 1.73 16 8 H 0.15 1.67 6.48 -2.39 -0.02 1.65 16 9 N -0.70 -11.64 5.95 -459.59 -2.74 -14.38 16 10 C 0.70 19.31 8.62 179.44 1.55 20.85 16 11 O -0.58 -20.86 17.48 -3.84 -0.07 -20.93 16 12 N -0.58 -16.77 2.60 -773.13 -2.01 -18.78 16 13 C 0.12 4.00 5.70 86.38 0.49 4.49 16 14 C -0.10 -4.33 5.48 30.59 0.17 -4.16 16 15 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 16 C -0.54 -32.27 9.66 25.60 0.25 -32.03 16 17 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 18 C 0.00 0.09 5.47 84.65 0.46 0.56 16 19 N -0.95 -61.42 13.96 21.45 0.30 -61.13 16 20 Si 0.96 45.02 27.47 68.60 1.88 46.91 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 24 C 0.52 13.12 7.65 87.94 0.67 13.79 16 25 O -0.49 -15.40 17.75 -2.89 -0.05 -15.46 16 26 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.06 0.39 6.57 -2.39 -0.02 0.38 16 28 H 0.05 0.38 8.14 -2.38 -0.02 0.37 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.37 6.51 -2.39 -0.02 0.35 16 33 H 0.07 0.39 6.57 -2.38 -0.02 0.37 16 34 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.45 4.91 8.31 -92.71 -0.77 4.14 16 37 H 0.10 3.15 7.86 -2.39 -0.02 3.13 16 38 H 0.10 3.15 8.00 -2.39 -0.02 3.13 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 42 H 0.03 1.21 7.57 -2.39 -0.02 1.20 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -77.13 348.53 2.95 -74.18 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.17 Total: 7.79 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.46 Total: 1.79 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.45 Total: -94.29 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.12 Total: -36.38 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -77.13 2.95 -74.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.669 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds