Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47046 * 2 1 4 4 H 1.09008 * 109.47074 * 55.00607 * 3 2 1 5 5 C 1.52994 * 109.47445 * 295.00162 * 3 2 1 6 6 C 1.53008 * 109.47239 * 174.99869 * 3 2 1 7 7 C 1.52995 * 109.47119 * 294.10891 * 6 3 2 8 8 H 1.09009 * 110.53549 * 59.59381 * 7 6 3 9 9 N 1.47310 * 110.60354 * 296.76602 * 7 6 3 10 10 C 1.34528 * 106.61769 * 241.32061 * 9 7 6 11 11 O 1.21543 * 123.76898 * 179.97438 * 10 9 7 12 12 N 1.33792 * 112.45701 * 359.97438 * 10 9 7 13 13 C 1.46508 * 124.17678 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46981 * 90.02335 * 13 12 10 15 15 C 1.53001 * 109.47041 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.46890 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99767 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99871 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46778 * 120.00149 * 20 18 16 23 23 H 1.48497 * 109.46880 * 240.00295 * 20 18 16 24 24 C 1.34768 * 111.64771 * 0.22934 * 12 10 9 25 25 O 1.21232 * 127.16161 * 179.73307 * 24 12 10 26 26 H 1.09004 * 109.47074 * 299.99382 * 1 2 3 27 27 H 1.08994 * 109.47326 * 59.99710 * 1 2 3 28 28 H 1.09001 * 109.46714 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46803 * 240.00310 * 2 1 3 30 30 H 1.08999 * 109.46854 * 120.00229 * 2 1 3 31 31 H 1.09001 * 109.47234 * 65.80039 * 5 3 2 32 32 H 1.08996 * 109.47368 * 185.79476 * 5 3 2 33 33 H 1.08995 * 109.47090 * 305.79646 * 5 3 2 34 34 H 1.08997 * 109.46987 * 174.10903 * 6 3 2 35 35 H 1.09004 * 109.46539 * 54.10549 * 6 3 2 36 36 H 0.96997 * 126.68980 * 61.34438 * 9 7 6 37 37 H 1.09006 * 109.46662 * 330.02800 * 13 12 10 38 38 H 1.08998 * 109.47157 * 210.02670 * 13 12 10 39 39 H 1.09004 * 109.46852 * 59.99944 * 14 13 12 40 40 H 1.08998 * 109.46961 * 300.00362 * 14 13 12 41 41 H 1.09000 * 109.46761 * 299.99908 * 15 14 13 42 42 H 1.08996 * 109.46865 * 59.99915 * 15 14 13 43 43 H 0.96998 * 119.99582 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1265 -1.3072 6 6 3.5649 1.4443 0.1258 7 6 3.9642 0.8943 1.4964 8 1 3.5942 -0.1233 1.6227 9 7 3.4604 1.7660 2.5717 10 6 4.5385 2.2189 3.2368 11 8 4.4777 2.9691 4.1911 12 7 5.6852 1.7511 2.7304 13 6 7.0122 2.0804 3.2566 14 6 7.4038 1.0601 4.3274 15 6 8.7894 1.4044 4.8774 16 6 9.1748 0.3999 5.9326 17 1 8.4988 -0.4035 6.1859 18 6 10.3903 0.5064 6.5746 19 7 11.2132 1.4849 6.2664 20 14 10.8684 -0.7392 7.8821 21 1 9.7769 -1.7335 8.0411 22 1 12.1146 -1.4343 7.4713 23 1 11.0937 -0.0402 9.1727 24 6 5.4689 0.9439 1.6730 25 8 6.3040 0.3751 1.0031 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5498 2.2175 -1.3488 32 1 2.0848 3.1184 -1.3527 33 1 1.9826 1.5312 -2.1516 34 1 3.9368 2.4635 0.0208 35 1 3.9946 0.8183 -0.6563 36 1 2.5323 1.9729 2.7631 37 1 6.9917 3.0780 3.6954 38 1 7.7410 2.0546 2.4464 39 1 7.4241 0.0625 3.8886 40 1 6.6750 1.0859 5.1375 41 1 9.5184 1.3789 4.0674 42 1 8.7685 2.4019 5.3162 43 1 12.0682 1.5600 6.7184 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578892229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -79.160047 kcal Electronic energy + Delta-G solvation = -22378.643541 eV Core-core repulsion = 19037.543694 eV Total energy + Delta-G solvation = -3341.099847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.37971 -38.50010 -37.91018 -35.85118 -35.37855 -33.39153 -31.46813 -31.00633 -29.19862 -27.30589 -25.37854 -23.80937 -23.61987 -22.33059 -20.78684 -20.37354 -19.76108 -18.01433 -17.07425 -16.48970 -16.20741 -15.64700 -15.36762 -15.16676 -14.90353 -14.57110 -14.38580 -14.00652 -13.93368 -13.79952 -13.39012 -12.63990 -12.55265 -12.46674 -12.24375 -12.07101 -11.89338 -11.48142 -11.27228 -11.01857 -10.99001 -10.88476 -10.84706 -10.78048 -10.50869 -10.08409 -9.78572 -9.74949 -9.55398 -9.27892 -8.97843 -8.33656 -5.98517 -4.00576 1.67169 2.33150 3.09049 3.13200 3.33361 3.40441 3.45126 3.88703 4.24939 4.30808 4.48142 4.49645 4.56437 4.80279 5.04211 5.10460 5.14870 5.22016 5.28208 5.28939 5.37722 5.46510 5.61294 5.64028 5.66922 5.68653 5.73375 5.75900 5.77438 5.94505 5.97175 6.03153 6.53651 6.71189 6.76487 7.02853 7.19190 7.46140 7.66248 7.79437 8.00190 8.20060 8.42871 9.05466 9.63248 11.13018 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032834 B = 0.003058 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.561643 B = 9155.523551 C = 9207.953821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.148 4.148 6 C -0.114 4.114 7 C 0.091 3.909 8 H 0.126 0.874 9 N -0.728 5.728 10 C 0.700 3.300 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.115 3.885 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.522 3.478 25 O -0.465 6.465 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.436 0.564 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.071 -0.242 -15.908 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.205 4.205 6 C -0.153 4.153 7 C -0.018 4.018 8 H 0.143 0.857 9 N -0.394 5.394 10 C 0.401 3.599 11 O -0.411 6.411 12 N -0.316 5.316 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.308 3.692 25 O -0.335 6.335 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.280 0.720 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.336 -0.053 -15.682 26.479 hybrid contribution -0.049 -0.606 0.876 1.066 sum -21.384 -0.658 -14.806 26.018 Atomic orbital electron populations 1.21813 0.95706 1.01701 1.01907 1.21698 0.96147 0.96012 1.02490 1.21154 0.93990 0.96713 0.99035 0.90943 1.21852 1.01460 1.00447 0.96736 1.21871 0.96740 1.02687 0.93984 1.22160 0.91956 0.97552 0.90094 0.85696 1.45568 1.08460 1.51888 1.33437 1.15943 0.80977 0.80537 0.82446 1.91026 1.85293 1.37706 1.27116 1.46630 1.09493 1.45016 1.30482 1.22102 0.78186 1.01548 0.98630 1.22000 1.01231 0.96889 0.95998 1.19036 0.89003 0.97320 0.95907 1.21226 1.02123 1.11912 1.20406 0.92657 1.25019 0.96529 0.95727 0.97198 1.69972 1.09625 1.31373 1.42467 0.86518 0.78410 0.81403 0.81579 1.19762 1.20992 1.20979 1.20782 0.90846 0.77926 0.79638 1.90810 1.51715 1.43552 1.47401 0.92746 0.92513 0.92767 0.91490 0.91732 0.92266 0.92562 0.92406 0.90577 0.89133 0.72020 0.88884 0.89078 0.92881 0.92597 0.96220 0.96138 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.67 37.16 0.36 -0.37 16 2 C -0.13 -0.64 5.29 -26.73 -0.14 -0.78 16 3 C -0.09 -0.48 2.33 -90.62 -0.21 -0.69 16 4 H 0.07 0.37 7.05 -51.92 -0.37 0.00 16 5 C -0.15 -0.75 8.80 37.15 0.33 -0.42 16 6 C -0.11 -0.81 4.46 -26.73 -0.12 -0.93 16 7 C 0.09 0.83 3.47 -68.21 -0.24 0.60 16 8 H 0.13 0.92 6.55 -51.92 -0.34 0.58 16 9 N -0.73 -7.16 5.89 -59.19 -0.35 -7.50 16 10 C 0.70 10.46 8.62 -88.02 -0.76 9.70 16 11 O -0.54 -10.10 17.48 5.33 0.09 -10.01 16 12 N -0.57 -8.92 2.60 -120.72 -0.31 -9.23 16 13 C 0.11 2.07 5.70 -4.04 -0.02 2.05 16 14 C -0.12 -2.65 5.48 -26.73 -0.15 -2.80 16 15 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 16 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 C 0.52 7.26 7.65 -10.55 -0.08 7.18 16 25 O -0.47 -7.75 17.75 5.60 0.10 -7.65 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.26 6.70 -51.93 -0.35 -0.09 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 6.39 -51.93 -0.33 0.00 16 31 H 0.06 0.27 6.86 -51.93 -0.36 -0.08 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.44 3.14 8.17 -40.82 -0.33 2.81 16 37 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 38 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 352.06 15.07 5.31 5.31 Total: -1.00 -34.04 352.06 -8.12 -42.16 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.09 Total: -3.84 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.58 Total: 0.23 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.07 Total: -43.29 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.19 Total: -17.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.04 -8.12 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.997 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds