Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.08993 * 109.47194 * 54.99781 * 3 2 1 5 5 C 1.53006 * 109.47127 * 294.99938 * 3 2 1 6 6 C 1.52999 * 109.46991 * 175.00623 * 3 2 1 7 7 C 1.53002 * 109.47304 * 185.00168 * 6 3 2 8 8 H 1.08999 * 110.52848 * 307.82827 * 7 6 3 9 9 N 1.47310 * 110.59854 * 70.81903 * 7 6 3 10 10 C 1.34529 * 106.61811 * 118.53123 * 9 7 6 11 11 O 1.21537 * 123.77142 * 179.97438 * 10 9 7 12 12 N 1.33788 * 112.45615 * 0.02562 * 10 9 7 13 13 C 1.46508 * 124.17889 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46902 * 270.03557 * 13 12 10 15 15 C 1.52998 * 109.47241 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47092 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99545 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00131 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99699 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46998 * 60.00195 * 20 18 16 22 22 H 1.48503 * 109.46803 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47037 * 299.99596 * 20 18 16 24 24 C 1.34765 * 111.64555 * 359.97438 * 12 10 9 25 25 O 1.21237 * 127.15891 * 179.97438 * 24 12 10 26 26 H 1.08998 * 109.46849 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47227 * 59.99725 * 1 2 3 28 28 H 1.09004 * 109.47014 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46717 * 239.99823 * 2 1 3 30 30 H 1.09000 * 109.47227 * 120.00275 * 2 1 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46801 * 300.00272 * 5 3 2 33 33 H 1.09001 * 109.46998 * 59.99868 * 5 3 2 34 34 H 1.09007 * 109.46705 * 304.99506 * 6 3 2 35 35 H 1.08993 * 109.47768 * 64.99697 * 6 3 2 36 36 H 0.97001 * 126.69463 * 298.50474 * 9 7 6 37 37 H 1.08998 * 109.47063 * 30.03538 * 13 12 10 38 38 H 1.08999 * 109.47113 * 150.03561 * 13 12 10 39 39 H 1.08998 * 109.47246 * 299.99869 * 14 13 12 40 40 H 1.09004 * 109.46857 * 59.99847 * 14 13 12 41 41 H 1.09007 * 109.47117 * 300.00400 * 15 14 13 42 42 H 1.08999 * 109.46800 * 59.99987 * 15 14 13 43 43 H 0.97002 * 120.00145 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1256 7 6 4.0645 2.8849 0.2510 8 1 3.6659 3.4994 -0.5562 9 7 3.7006 3.4473 1.5630 10 6 4.8543 3.7488 2.1858 11 8 4.9146 4.2355 3.2978 12 7 5.9278 3.4538 1.4438 13 6 7.3110 3.6772 1.8721 14 6 7.7571 5.0772 1.4458 15 6 9.2013 5.3108 1.8936 16 6 9.6404 6.6901 1.4742 17 1 8.9579 7.3353 0.9412 18 6 10.9140 7.1277 1.7701 19 7 11.7453 6.3417 2.4188 20 14 11.4586 8.8371 1.2497 21 1 10.5754 9.8512 1.8796 22 1 12.8604 9.0637 1.6845 23 1 11.3730 8.9554 -0.2281 24 6 5.5797 2.9259 0.2537 25 8 6.3237 2.5605 -0.6310 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9989 3.1541 -1.3076 32 1 2.0698 1.5874 -2.1492 33 1 0.5489 2.1252 -1.3970 34 1 3.8570 0.8800 1.0112 35 1 4.0029 0.9836 -0.7597 36 1 2.8040 3.5757 1.9100 37 1 7.3739 3.5903 2.9568 38 1 7.9592 2.9328 1.4098 39 1 7.6941 5.1641 0.3611 40 1 7.1088 5.8216 1.9082 41 1 9.2639 5.2240 2.9784 42 1 9.8498 4.5664 1.4316 43 1 12.6412 6.6497 2.6273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578892230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = -79.266233 kcal Electronic energy + Delta-G solvation = -22305.143719 eV Core-core repulsion = 18964.039267 eV Total energy + Delta-G solvation = -3341.104451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.37394 -38.50469 -37.86370 -35.87232 -35.42309 -33.41793 -31.58973 -31.04279 -28.65829 -27.28560 -26.02132 -23.86167 -23.46095 -22.02821 -20.80166 -20.40998 -19.77629 -18.01888 -17.11211 -16.46032 -16.17728 -15.66605 -15.39758 -15.25017 -15.05997 -14.41836 -14.19566 -14.02172 -13.96503 -13.89006 -13.36286 -12.88051 -12.46551 -12.40053 -12.22697 -12.08835 -11.66261 -11.47614 -11.31561 -11.04617 -10.99629 -10.94691 -10.81392 -10.79765 -10.52771 -10.08046 -9.78967 -9.74269 -9.55403 -9.28469 -8.99072 -8.32789 -5.97947 -4.00215 1.67077 2.33188 3.09167 3.13058 3.36084 3.39820 3.42818 3.88797 4.19393 4.38297 4.48279 4.49886 4.58850 4.82133 4.95007 5.08495 5.13426 5.21293 5.28172 5.37916 5.39421 5.47424 5.60635 5.62675 5.66516 5.67050 5.70890 5.76100 5.77497 5.96837 5.98158 6.03184 6.53701 6.71311 6.76497 7.02931 7.19187 7.46193 7.65986 7.79625 8.00369 8.20070 8.43069 9.05288 9.63411 11.13467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037065 B = 0.002980 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.254097 B = 9392.671220 C = 9538.311139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.156 4.156 6 C -0.115 4.115 7 C 0.091 3.909 8 H 0.127 0.873 9 N -0.728 5.728 10 C 0.700 3.300 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.115 3.885 14 C -0.123 4.123 15 C 0.026 3.974 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.522 3.478 25 O -0.465 6.465 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.436 0.564 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.354 -12.988 -5.862 27.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.109 4.109 4 H 0.090 0.910 5 C -0.213 4.213 6 C -0.154 4.154 7 C -0.018 4.018 8 H 0.144 0.856 9 N -0.394 5.394 10 C 0.401 3.599 11 O -0.411 6.411 12 N -0.316 5.316 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.308 3.692 25 O -0.335 6.335 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.280 0.720 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.584 -12.925 -5.646 26.627 hybrid contribution -0.014 1.064 -0.121 1.071 sum -22.598 -11.861 -5.768 26.165 Atomic orbital electron populations 1.21823 0.95736 1.01639 1.01947 1.21561 0.96011 0.95826 1.02331 1.21151 0.93963 0.96928 0.98812 0.90962 1.21998 1.01696 1.00545 0.97030 1.21887 0.96335 0.92902 1.04242 1.22178 0.93053 0.98231 0.88352 0.85613 1.45559 1.08031 1.67904 1.17872 1.15938 0.81071 0.78727 0.84169 1.91025 1.85415 1.47180 1.17514 1.46630 1.09669 1.57719 1.17610 1.22100 0.75967 1.00719 1.01672 1.22002 1.01045 0.92620 1.00464 1.19027 0.88228 0.97076 0.96870 1.21148 0.98039 0.99973 1.36665 0.92769 1.25013 0.96722 0.97481 0.95206 1.69949 1.06780 1.36317 1.40381 0.86633 0.77578 0.84662 0.78986 1.20236 1.21255 1.20241 1.20790 0.90520 0.76168 0.81740 1.90811 1.59041 1.45362 1.38272 0.92759 0.92412 0.92828 0.91687 0.91855 0.92444 0.92159 0.92135 0.90505 0.89147 0.72031 0.88877 0.89078 0.92882 0.92600 0.96146 0.96230 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.67 37.16 0.36 -0.38 16 2 C -0.12 -0.63 5.40 -26.73 -0.14 -0.77 16 3 C -0.09 -0.48 2.36 -90.62 -0.21 -0.69 16 4 H 0.07 0.36 7.51 -51.93 -0.39 -0.03 16 5 C -0.16 -0.78 8.73 37.16 0.32 -0.46 16 6 C -0.12 -0.82 4.43 -26.73 -0.12 -0.93 16 7 C 0.09 0.83 3.52 -68.21 -0.24 0.59 16 8 H 0.13 0.94 6.32 -51.93 -0.33 0.61 16 9 N -0.73 -7.17 6.03 -59.20 -0.36 -7.53 16 10 C 0.70 10.48 8.62 -88.02 -0.76 9.73 16 11 O -0.54 -10.11 17.48 5.33 0.09 -10.02 16 12 N -0.57 -8.94 2.60 -120.73 -0.31 -9.25 16 13 C 0.11 2.08 5.70 -4.04 -0.02 2.05 16 14 C -0.12 -2.66 5.48 -26.73 -0.15 -2.80 16 15 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 16 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.52 7.27 7.65 -10.56 -0.08 7.19 16 25 O -0.47 -7.77 17.76 5.59 0.10 -7.67 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.26 6.56 -51.93 -0.34 -0.08 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 6.43 -51.93 -0.33 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.44 3.12 8.51 -40.82 -0.35 2.77 16 37 H 0.09 1.68 7.86 -51.93 -0.41 1.28 16 38 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -34.01 352.49 -8.14 -42.15 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -7.10 Total: -3.75 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.59 Total: 0.21 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.06 Total: -43.33 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.19 Total: -17.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.01 -8.14 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578892230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.116 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds