Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47329 * 2 1 4 4 H 1.08995 * 109.66305 * 55.30332 * 3 2 1 5 5 C 1.50080 * 109.40875 * 175.45238 * 3 2 1 6 6 O 1.21280 * 118.50202 * 287.25720 * 5 3 2 7 7 N 1.33379 * 123.01153 * 107.44096 * 5 3 2 8 8 C 1.45652 * 124.58378 * 4.15981 * 7 5 3 9 9 C 1.52985 * 110.77640 * 338.07764 * 8 7 5 10 10 N 1.47044 * 109.57149 * 295.00266 * 3 2 1 11 11 C 1.34777 * 121.35493 * 102.93737 * 10 3 2 12 12 O 1.21288 * 119.99593 * 359.71795 * 11 10 3 13 13 C 1.50697 * 120.00369 * 179.71953 * 11 10 3 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47291 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47282 * 89.99593 * 21 19 17 23 23 H 1.48498 * 109.47211 * 210.00040 * 21 19 17 24 24 H 1.48506 * 109.46856 * 330.00220 * 21 19 17 25 25 H 1.09000 * 109.46664 * 299.99747 * 1 2 3 26 26 H 1.08998 * 109.47464 * 59.99154 * 1 2 3 27 27 H 1.08998 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46664 * 240.00253 * 2 1 3 29 29 H 1.09002 * 109.46982 * 120.00826 * 2 1 3 30 30 H 0.96996 * 117.70925 * 184.14634 * 7 5 3 31 31 H 1.08998 * 109.21497 * 217.74481 * 8 7 5 32 32 H 1.09004 * 109.21503 * 98.41911 * 8 7 5 33 33 H 1.09000 * 109.72153 * 287.05250 * 9 8 7 34 34 H 1.08999 * 109.75186 * 166.41756 * 9 8 7 35 35 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 36 36 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 37 37 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 38 38 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 39 39 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 40 40 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 41 41 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 42 42 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 43 43 H 0.97000 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6115 1.9830 0.8439 5 6 3.5366 1.4422 0.1122 6 8 4.0370 1.1530 1.1785 7 7 4.3417 1.7490 -0.9059 8 6 3.8858 2.2018 -2.2131 9 6 2.4366 1.7777 -2.4591 10 7 1.6522 2.1020 -1.2556 11 6 0.6241 2.9723 -1.3022 12 8 -0.0055 3.2214 -0.2959 13 6 0.2567 3.6357 -2.6044 14 6 -0.9348 4.5696 -2.3828 15 6 -1.3081 5.2426 -3.7051 16 6 -2.4992 6.1769 -3.4833 17 6 -2.8666 6.8404 -4.7855 18 1 -2.3062 6.6182 -5.6817 19 6 -3.9180 7.7310 -4.8330 20 7 -4.6007 8.0012 -3.7418 21 14 -4.3739 8.5529 -6.4474 22 1 -5.3727 7.7187 -7.1629 23 1 -4.9525 9.8930 -6.1745 24 1 -3.1587 8.7002 -7.2882 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 5.2979 1.6649 -0.7661 31 1 4.5222 1.7688 -2.9848 32 1 3.9546 3.2886 -2.2604 33 1 2.3943 0.7050 -2.6478 34 1 2.0352 2.3181 -3.3164 35 1 -0.0094 2.8744 -3.3377 36 1 1.1062 4.2119 -2.9709 37 1 -0.6683 5.3309 -1.6496 38 1 -1.7845 3.9936 -2.0161 39 1 -0.4586 5.8185 -4.0722 40 1 -1.5747 4.4811 -4.4379 41 1 -3.3490 5.6015 -3.1160 42 1 -2.2322 6.9385 -2.7506 43 1 -5.3406 8.6275 -3.7753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588350905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = -93.914384 kcal Electronic energy + Delta-G solvation = -22419.445750 eV Core-core repulsion = 19077.706107 eV Total energy + Delta-G solvation = -3341.739643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24542 -39.33796 -36.90052 -35.42625 -34.84721 -33.21939 -32.48992 -29.95420 -29.67256 -27.60133 -25.47374 -24.32346 -22.73155 -22.27392 -20.29091 -19.99530 -18.89524 -17.77808 -17.45946 -16.69474 -16.24798 -16.11184 -15.71840 -15.25433 -14.69291 -14.59276 -14.48469 -14.20726 -13.82806 -13.17759 -12.96171 -12.66325 -12.50354 -12.47174 -12.22123 -12.06429 -11.69135 -11.66844 -11.54879 -11.24008 -11.01048 -10.58388 -10.53465 -10.50864 -10.44079 -9.86098 -9.64696 -9.58622 -9.25520 -9.00951 -8.97611 -8.32092 -5.96799 -3.99518 2.17629 2.44759 2.54073 2.86073 3.32614 3.38885 3.41624 3.97474 4.18301 4.43425 4.48149 4.54685 4.61148 4.72257 4.80361 4.99376 5.09198 5.20149 5.24834 5.26188 5.30482 5.38623 5.50178 5.68031 5.74372 5.76803 5.96101 6.07870 6.10100 6.24534 6.32153 6.49612 6.79314 6.81357 6.95915 7.07548 7.18050 7.72093 7.74013 7.87750 8.03857 8.05466 8.45795 9.08231 9.64268 11.14504 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.002910 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.806901 B = 9618.941483 C =10024.381854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.130 3.870 4 H 0.130 0.870 5 C 0.520 3.480 6 O -0.545 6.545 7 N -0.718 5.718 8 C 0.093 3.907 9 C 0.090 3.910 10 N -0.622 5.622 11 C 0.520 3.480 12 O -0.522 6.522 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.400 0.600 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.278 -16.986 1.727 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.024 3.976 4 H 0.147 0.853 5 C 0.305 3.695 6 O -0.422 6.422 7 N -0.370 5.370 8 C -0.032 4.032 9 C -0.034 4.034 10 N -0.359 5.359 11 C 0.310 3.690 12 O -0.396 6.396 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.764 -16.836 2.868 24.642 hybrid contribution 0.191 0.495 -1.036 1.164 sum 17.955 -16.340 1.832 24.346 Atomic orbital electron populations 1.21684 0.93880 1.01700 1.02996 1.21747 0.97708 0.93442 1.03101 1.21311 0.89961 0.96353 0.90001 0.85260 1.20239 0.89855 0.75922 0.83443 1.90790 1.75769 1.48986 1.26642 1.45372 1.10550 1.68154 1.12955 1.21807 0.96113 1.00677 0.84590 1.22106 0.89883 1.02418 0.88975 1.48421 1.33583 1.45122 1.08791 1.21155 0.78319 0.77575 0.91979 1.90730 1.50677 1.61505 1.36683 1.21842 1.01669 1.00183 0.93970 1.21478 0.95388 0.97636 0.99713 1.21643 1.00175 0.98652 0.94246 1.19093 0.91999 0.93771 0.96870 1.21274 1.14758 1.24634 0.95260 0.92766 1.25044 0.96434 0.96843 0.96247 1.69976 1.20833 1.35311 1.27292 0.86615 0.78625 0.78849 0.84010 1.20707 1.21255 1.19918 0.91918 0.92506 0.92358 0.91512 0.89946 0.76446 0.89016 0.90804 0.90019 0.86997 0.88944 0.89040 0.91738 0.91697 0.93483 0.93457 0.96588 0.96596 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.12 -1.08 5.49 -26.73 -0.15 -1.23 16 3 C 0.13 1.37 2.45 -69.09 -0.17 1.21 16 4 H 0.13 1.68 7.23 -51.93 -0.38 1.30 16 5 C 0.52 5.58 7.07 -11.91 -0.08 5.50 16 6 O -0.55 -7.83 17.80 5.56 0.10 -7.73 16 7 N -0.72 -5.16 5.42 -61.45 -0.33 -5.50 16 8 C 0.09 0.42 7.34 -4.51 -0.03 0.38 16 9 C 0.09 0.48 6.31 -3.63 -0.02 0.46 16 10 N -0.62 -5.92 2.26 -166.75 -0.38 -6.30 16 11 C 0.52 6.64 6.77 -10.99 -0.07 6.56 16 12 O -0.52 -8.85 15.54 5.55 0.09 -8.77 16 13 C -0.14 -1.61 4.07 -27.89 -0.11 -1.73 16 14 C -0.10 -1.75 4.50 -26.73 -0.12 -1.88 16 15 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.62 7.06 -51.93 -0.37 0.25 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.50 7.37 -51.93 -0.38 0.12 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.40 2.39 8.80 -40.82 -0.36 2.03 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.34 7.42 -51.93 -0.39 -0.04 16 34 H 0.11 0.44 6.03 -51.93 -0.31 0.12 16 35 H 0.09 0.89 7.83 -51.93 -0.41 0.49 16 36 H 0.09 0.89 7.88 -51.93 -0.41 0.48 16 37 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -35.58 348.68 -7.83 -43.41 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.19 Total: -3.17 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.09 Total: -7.26 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.03 Total: -38.33 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.19 Total: -16.50 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.58 -7.83 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588350905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.505 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds