Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00243 * 2 1 4 4 C 1.52997 * 109.46887 * 124.99973 * 3 2 1 5 5 H 1.08994 * 109.47744 * 305.00253 * 4 3 2 6 6 C 1.53005 * 109.46749 * 185.00408 * 4 3 2 7 7 C 1.53002 * 109.46832 * 175.00224 * 6 4 3 8 8 N 1.46496 * 109.47153 * 65.00867 * 4 3 2 9 9 C 1.34772 * 119.99823 * 204.99884 * 8 4 3 10 10 O 1.21588 * 120.00599 * 359.97438 * 9 8 4 11 11 N 1.34787 * 119.99718 * 179.97438 * 9 8 4 12 12 C 1.47416 * 125.64874 * 0.02562 * 11 9 8 13 13 C 1.54915 * 104.83222 * 155.83799 * 12 11 9 14 14 C 1.55150 * 101.58155 * 37.00692 * 13 12 11 15 15 O 1.42902 * 110.72125 * 83.04251 * 14 13 12 16 16 C 1.50702 * 110.71940 * 206.13740 * 14 13 12 17 17 H 1.07995 * 119.99831 * 356.76549 * 16 14 13 18 18 C 1.37880 * 119.99776 * 176.49168 * 16 14 13 19 19 N 1.31518 * 119.99950 * 354.18565 * 18 16 14 20 20 Si 1.86802 * 119.99793 * 174.18124 * 18 16 14 21 21 H 1.48503 * 109.46825 * 94.99217 * 20 18 16 22 22 H 1.48502 * 109.46898 * 214.98837 * 20 18 16 23 23 H 1.48497 * 109.47244 * 334.99396 * 20 18 16 24 24 C 1.47317 * 125.61487 * 180.16328 * 11 9 8 25 25 H 1.08003 * 119.99945 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00123 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.00418 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46503 * 5.00561 * 3 2 1 29 29 H 1.08993 * 109.47307 * 245.00621 * 3 2 1 30 30 H 1.09000 * 109.47444 * 295.00132 * 6 4 3 31 31 H 1.08995 * 109.47227 * 55.00456 * 6 4 3 32 32 H 1.08994 * 109.47320 * 299.99524 * 7 6 4 33 33 H 1.09000 * 109.47467 * 60.00032 * 7 6 4 34 34 H 1.09001 * 109.47151 * 180.02562 * 7 6 4 35 35 H 0.97003 * 120.00142 * 24.99076 * 8 4 3 36 36 H 1.09003 * 110.36999 * 37.00041 * 12 11 9 37 37 H 1.09002 * 110.37030 * 274.67227 * 12 11 9 38 38 H 1.09004 * 111.00121 * 278.93593 * 13 12 11 39 39 H 1.09001 * 111.00417 * 155.08680 * 13 12 11 40 40 H 0.96697 * 113.99890 * 182.44319 * 15 14 13 41 41 H 0.96998 * 119.99682 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.06326 * 61.74939 * 24 11 9 43 43 H 1.09005 * 109.85312 * 300.49581 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 1 2.4884 1.1468 2.1060 6 6 3.7091 2.7045 1.2553 7 6 4.5857 2.7754 2.5073 8 7 4.0546 0.2969 1.0000 9 6 4.6912 -0.2171 2.0710 10 8 4.4196 0.1793 3.1879 11 7 5.6290 -1.1708 1.9040 12 6 6.0549 -1.7400 0.6126 13 6 7.4876 -2.2716 0.8668 14 6 7.3656 -2.8156 2.3147 15 8 6.8146 -4.1341 2.3148 16 6 8.7052 -2.7997 3.0049 17 1 9.5873 -2.4890 2.4647 18 6 8.8038 -3.1763 4.3276 19 7 7.7165 -3.4392 5.0192 20 14 10.4817 -3.3133 5.1372 21 1 10.7957 -2.0449 5.8429 22 1 10.4706 -4.4328 6.1127 23 1 11.5124 -3.5707 4.0996 24 6 6.3955 -1.8184 2.9825 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4026 -0.9314 30 1 4.3274 2.8536 0.3700 31 1 2.9467 3.4821 1.3011 32 1 3.9675 2.6264 3.3925 33 1 5.3481 1.9978 2.4616 34 1 5.0656 3.7526 2.5601 35 1 4.2716 -0.0193 0.1090 36 1 6.0678 -0.9678 -0.1567 37 1 5.3937 -2.5561 0.3211 38 1 8.2189 -1.4651 0.8128 39 1 7.7374 -3.0708 0.1689 40 1 6.6829 -4.5053 3.1979 41 1 7.7858 -3.7045 5.9496 42 1 5.7209 -2.3502 3.6534 43 1 6.9589 -1.0685 3.5380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = -67.230855 kcal Electronic energy + Delta-G solvation = -23323.475423 eV Core-core repulsion = 19982.892865 eV Total energy + Delta-G solvation = -3340.582558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87688 -37.87451 -36.35553 -34.25890 -33.73149 -32.21763 -31.97391 -29.82652 -28.61861 -27.64282 -25.02953 -23.75836 -22.68377 -20.80386 -19.84155 -19.64306 -19.44075 -17.47701 -17.04457 -16.17168 -15.59819 -15.26770 -14.97872 -14.47225 -14.22667 -13.96450 -13.61919 -13.34132 -12.96749 -12.88397 -12.77042 -12.49863 -12.03424 -11.70581 -11.67961 -11.48621 -11.40944 -11.17138 -11.01983 -10.88462 -10.80540 -10.64681 -10.58621 -10.49464 -10.16219 -9.47948 -9.44665 -9.26651 -8.69822 -8.66509 -8.29338 -7.69995 -6.26541 -4.35162 2.17358 3.18160 3.22975 3.30078 3.33560 3.81480 4.27968 4.47524 4.66354 4.89704 4.99194 5.00661 5.22484 5.31016 5.38846 5.40045 5.61764 5.64973 5.71976 5.77969 5.81061 5.93091 6.02388 6.07575 6.13116 6.16760 6.37791 6.52543 6.53123 6.63099 6.73323 6.75008 6.90501 6.93372 7.04236 7.32588 7.34728 7.71235 7.74785 8.05044 8.59819 8.69296 9.21779 9.30157 9.37001 10.80551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.004348 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.956527 B = 6437.889375 C = 6894.603875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.101 4.101 4 C 0.168 3.832 5 H 0.088 0.912 6 C -0.132 4.132 7 C -0.143 4.143 8 N -0.746 5.746 9 C 0.715 3.285 10 O -0.591 6.591 11 N -0.633 5.633 12 C 0.104 3.896 13 C -0.115 4.115 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.891 5.891 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.127 3.873 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.390 0.610 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.381 0.619 41 H 0.269 0.731 42 H 0.062 0.938 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.214 8.036 -10.708 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.139 4.139 4 C 0.062 3.938 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.201 4.201 8 N -0.402 5.402 9 C 0.418 3.582 10 O -0.470 6.470 11 N -0.370 5.370 12 C -0.019 4.019 13 C -0.153 4.153 14 C 0.206 3.794 15 O -0.393 6.393 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.197 1.197 24 C 0.005 3.995 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.224 0.776 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.512 8.410 -10.302 16.351 hybrid contribution 0.919 -0.331 0.715 1.211 sum -8.593 8.079 -9.587 15.199 Atomic orbital electron populations 1.23811 0.95906 1.01687 1.02143 1.22942 0.95985 0.98612 0.98924 1.21087 0.98102 0.96075 0.98614 1.20773 0.87584 0.86761 0.98674 0.89429 1.21978 0.99455 0.96426 0.99270 1.21776 1.00411 1.00556 0.97332 1.45211 1.43096 1.43615 1.08321 1.15491 0.79136 0.79190 0.84414 1.90892 1.68530 1.64309 1.23240 1.48085 1.39706 1.39456 1.09765 1.22202 0.97339 0.96658 0.85745 1.22714 0.93971 0.99962 0.98701 1.19509 0.90257 0.79939 0.89670 1.86107 1.86082 1.32249 1.34870 1.21500 0.93574 1.46391 0.96278 0.91583 1.25071 0.97331 0.93875 0.96969 1.69769 1.27565 1.45771 1.09874 0.86417 0.83668 0.77883 0.79117 1.20538 1.20924 1.19661 1.22874 0.92893 0.95653 0.88098 0.88619 0.88727 0.87250 0.90111 0.90561 0.92226 0.91726 0.92256 0.91792 0.94192 0.77582 0.92746 0.92199 0.90584 0.90700 0.76942 0.92055 0.91922 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 14.32 29.02 0.42 -1.45 16 2 C -0.15 -1.51 9.25 -36.02 -0.33 -1.84 16 3 C -0.10 -0.94 5.20 -27.88 -0.15 -1.09 16 4 C 0.17 2.10 2.24 -67.93 -0.15 1.95 16 5 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 6 C -0.13 -1.57 5.61 -26.73 -0.15 -1.72 16 7 C -0.14 -2.17 8.51 37.16 0.32 -1.85 16 8 N -0.75 -10.80 4.68 -58.68 -0.27 -11.07 16 9 C 0.72 14.07 7.06 -86.91 -0.61 13.45 16 10 O -0.59 -13.69 13.80 5.29 0.07 -13.62 16 11 N -0.63 -12.95 3.33 -176.00 -0.59 -13.54 16 12 C 0.10 1.79 6.57 -2.53 -0.02 1.78 16 13 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 14 C 0.25 5.93 0.85 -89.94 -0.08 5.85 16 15 O -0.58 -14.55 13.08 -35.23 -0.46 -15.01 16 16 C -0.54 -14.07 8.11 -34.44 -0.28 -14.35 16 17 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 18 C 0.07 1.85 5.25 -17.82 -0.09 1.76 16 19 N -0.89 -23.84 10.98 55.43 0.61 -23.23 16 20 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.13 3.09 5.22 -2.90 -0.02 3.07 16 25 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 26 H 0.09 0.77 7.84 -52.49 -0.41 0.35 16 27 H 0.11 1.23 8.03 -52.48 -0.42 0.81 16 28 H 0.08 0.64 7.79 -51.93 -0.40 0.24 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.97 7.84 -51.93 -0.41 0.57 16 33 H 0.06 1.17 5.64 -51.93 -0.29 0.88 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.39 4.79 7.08 -40.82 -0.29 4.50 16 36 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.38 9.72 7.53 45.56 0.34 10.06 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.06 1.68 7.90 -51.93 -0.41 1.27 16 43 H 0.06 1.72 7.81 -51.93 -0.41 1.32 16 LS Contribution 344.56 15.07 5.19 5.19 Total: -1.00 -29.25 344.56 -8.16 -37.41 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -6.39 Total: 15.27 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.30 Total: 3.15 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.25 Total: -47.84 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.39 Total: -28.63 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.25 -8.16 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.817 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds