Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99801 * 2 1 4 4 C 1.53007 * 109.46831 * 125.00601 * 3 2 1 5 5 H 1.09000 * 109.46831 * 54.99804 * 4 3 2 6 6 C 1.52998 * 109.47211 * 175.00162 * 4 3 2 7 7 C 1.52999 * 109.47021 * 184.99930 * 6 4 3 8 8 N 1.46506 * 109.46782 * 295.00180 * 4 3 2 9 9 C 1.34777 * 119.99873 * 155.00310 * 8 4 3 10 10 O 1.21592 * 119.99797 * 359.97438 * 9 8 4 11 11 N 1.34774 * 119.99902 * 179.97438 * 9 8 4 12 12 C 1.47019 * 125.64846 * 359.68989 * 11 9 8 13 13 C 1.54342 * 107.26391 * 178.84715 * 12 11 9 14 14 C 1.55150 * 103.02063 * 338.14249 * 13 12 11 15 15 O 1.42902 * 111.00614 * 277.22895 * 14 13 12 16 16 C 1.50703 * 111.03746 * 153.39701 * 14 13 12 17 17 H 1.07997 * 119.99888 * 6.32659 * 16 14 13 18 18 C 1.37877 * 119.99997 * 186.33369 * 16 14 13 19 19 N 1.31508 * 119.99959 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99831 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47356 * 59.99416 * 20 18 16 22 22 H 1.48499 * 109.46917 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46764 * 299.99538 * 20 18 16 24 24 C 1.47426 * 125.64606 * 179.97438 * 11 9 8 25 25 H 1.07993 * 120.00020 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99818 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00253 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47170 * 5.01060 * 3 2 1 29 29 H 1.09000 * 109.47294 * 245.00030 * 3 2 1 30 30 H 1.08994 * 109.46883 * 305.00092 * 6 4 3 31 31 H 1.09004 * 109.46862 * 64.99711 * 6 4 3 32 32 H 1.09004 * 109.46916 * 299.99584 * 7 6 4 33 33 H 1.08997 * 109.47126 * 60.00157 * 7 6 4 34 34 H 1.09007 * 109.46942 * 179.97438 * 7 6 4 35 35 H 0.96995 * 120.00050 * 334.72425 * 8 4 3 36 36 H 1.08995 * 109.88426 * 298.39755 * 12 11 9 37 37 H 1.08999 * 109.88168 * 59.56438 * 12 11 9 38 38 H 1.09003 * 110.84775 * 219.66974 * 13 12 11 39 39 H 1.09003 * 110.51067 * 96.45220 * 13 12 11 40 40 H 0.96698 * 114.00174 * 173.64937 * 15 14 13 41 41 H 0.97002 * 119.99935 * 180.02562 * 19 18 16 42 42 H 1.08998 * 110.37024 * 322.92854 * 24 11 9 43 43 H 1.09001 * 110.36638 * 85.14321 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6827 0.4572 1.1402 6 6 3.8876 2.6015 1.1111 7 6 4.9420 2.5696 2.2192 8 7 2.2786 1.3221 2.4362 9 6 2.8475 0.8472 3.5620 10 8 3.9883 0.4274 3.5362 11 7 2.1517 0.8376 4.7162 12 6 0.7733 1.3186 4.8899 13 6 0.3884 1.0827 6.3658 14 6 1.3749 -0.0290 6.8109 15 8 0.8971 -1.3206 6.4295 16 6 1.6266 0.0338 8.2955 17 1 1.0640 0.7210 8.9099 18 6 2.5753 -0.7859 8.8691 19 7 3.2601 -1.6229 8.1209 20 14 2.8878 -0.7075 10.7091 21 1 1.6377 -1.0405 11.4382 22 1 3.9473 -1.6823 11.0732 23 1 3.3265 0.6623 11.0787 24 6 2.6490 0.3485 6.0151 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0898 29 1 2.6212 1.4027 -0.9314 30 1 4.3815 2.6538 0.1409 31 1 3.2496 3.4757 1.2416 32 1 4.4480 2.5174 3.1895 33 1 5.5799 1.6955 2.0887 34 1 5.5497 3.4732 2.1687 35 1 1.3698 1.6603 2.4575 36 1 0.7195 2.3818 4.6560 37 1 0.1009 0.7593 4.2395 38 1 -0.6427 0.7388 6.4476 39 1 0.5409 1.9902 6.9500 40 1 1.5234 -2.0376 6.5991 41 1 3.9273 -2.1999 8.5245 42 1 3.2814 -0.5279 5.8736 43 1 3.2009 1.1346 6.5303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = -67.626747 kcal Electronic energy + Delta-G solvation = -23452.941082 eV Core-core repulsion = 20112.341356 eV Total energy + Delta-G solvation = -3340.599725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.84697 -37.85053 -36.31106 -34.19128 -33.66622 -32.19809 -31.95158 -29.86264 -28.63031 -27.63565 -25.03422 -23.70611 -22.62734 -20.75293 -19.97615 -19.60291 -19.33207 -17.45252 -16.96635 -16.27416 -15.47987 -15.09065 -14.91094 -14.46199 -14.29489 -13.99804 -13.60222 -13.44667 -12.93515 -12.88801 -12.68173 -12.45197 -12.04736 -11.95721 -11.63026 -11.43728 -11.30330 -11.06985 -10.98840 -10.82537 -10.77568 -10.61013 -10.56187 -10.46103 -10.16223 -9.49943 -9.39046 -9.31216 -8.66492 -8.63443 -8.31826 -7.61591 -6.24244 -4.34202 2.23285 3.20870 3.25975 3.30014 3.32122 3.84515 4.28389 4.54491 4.63360 4.90907 5.02672 5.06856 5.26041 5.33508 5.41287 5.45584 5.61738 5.64694 5.68968 5.78439 5.84727 5.92306 6.05874 6.09392 6.13945 6.17046 6.37182 6.54989 6.56265 6.67670 6.71913 6.74435 6.92925 6.94617 7.04408 7.28483 7.37406 7.73961 7.77814 8.07503 8.62338 8.71057 9.24793 9.33559 9.41700 10.82682 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.004575 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.868862 B = 6119.037954 C = 6666.163172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.101 4.101 4 C 0.167 3.833 5 H 0.088 0.912 6 C -0.132 4.132 7 C -0.143 4.143 8 N -0.743 5.743 9 C 0.717 3.283 10 O -0.593 6.593 11 N -0.629 5.629 12 C 0.106 3.894 13 C -0.116 4.116 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.539 4.539 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.892 5.892 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.115 3.885 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.390 0.610 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.381 0.619 41 H 0.270 0.730 42 H 0.084 0.916 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.500 7.007 -13.920 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.164 4.164 3 C -0.139 4.139 4 C 0.061 3.939 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.200 4.200 8 N -0.399 5.399 9 C 0.419 3.581 10 O -0.472 6.472 11 N -0.366 5.366 12 C -0.017 4.017 13 C -0.154 4.154 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.577 4.577 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.530 5.530 20 Si 0.730 3.270 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.007 4.007 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.224 0.776 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.977 6.890 -14.168 16.033 hybrid contribution 0.240 -0.130 1.171 1.203 sum -2.737 6.760 -12.997 14.903 Atomic orbital electron populations 1.23796 0.95882 1.01713 1.01922 1.22902 0.96053 0.98369 0.99093 1.21086 0.98537 0.95881 0.98376 1.20757 0.92290 0.98924 0.81892 0.89415 1.21977 0.98030 0.97665 0.99456 1.21775 0.98345 1.00556 0.99355 1.45159 1.17606 1.69281 1.07896 1.15476 0.84174 0.78921 0.79480 1.90886 1.17082 1.54474 1.84721 1.47933 1.14528 1.65288 1.08883 1.21895 0.83837 0.96942 0.99048 1.22587 1.00505 0.99574 0.92727 1.19616 0.87035 0.80850 0.91687 1.86100 1.47887 1.17985 1.87164 1.21423 1.21393 1.22706 0.92223 0.91653 1.25068 0.94731 0.94473 0.98872 1.69713 1.24234 1.23155 1.35908 0.86478 0.77986 0.78041 0.84484 1.20032 1.21096 1.20034 1.23080 0.99533 0.98994 0.79077 0.88783 0.88598 0.87367 0.91144 0.89592 0.91680 0.92310 0.91885 0.92208 0.94243 0.77641 0.93346 0.92793 0.90882 0.90532 0.76967 0.91970 0.89718 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 14.32 29.01 0.42 -1.53 16 2 C -0.15 -1.55 9.25 -36.03 -0.33 -1.88 16 3 C -0.10 -0.96 5.20 -27.88 -0.15 -1.10 16 4 C 0.17 2.12 2.24 -67.92 -0.15 1.96 16 5 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 6 C -0.13 -1.56 5.61 -26.73 -0.15 -1.71 16 7 C -0.14 -2.13 8.51 37.16 0.32 -1.81 16 8 N -0.74 -11.11 4.70 -58.67 -0.28 -11.39 16 9 C 0.72 14.33 7.06 -86.92 -0.61 13.72 16 10 O -0.59 -13.80 13.74 5.28 0.07 -13.72 16 11 N -0.63 -13.05 3.33 -176.24 -0.59 -13.64 16 12 C 0.11 1.87 6.15 -3.06 -0.02 1.85 16 13 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 14 C 0.25 6.03 0.87 -89.63 -0.08 5.95 16 15 O -0.58 -14.95 13.16 -35.23 -0.46 -15.41 16 16 C -0.54 -14.07 8.27 -34.44 -0.28 -14.36 16 17 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 18 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 19 N -0.89 -23.99 10.69 55.43 0.59 -23.40 16 20 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 C 0.12 2.80 5.38 -2.54 -0.01 2.79 16 25 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 26 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.07 0.60 7.79 -51.93 -0.40 0.19 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.14 5.65 -51.93 -0.29 0.84 16 33 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.39 5.11 7.59 -40.82 -0.31 4.80 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 40 H 0.38 10.05 7.56 45.56 0.34 10.40 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.08 2.33 7.33 -51.93 -0.38 1.95 16 43 H 0.05 1.39 8.03 -51.93 -0.42 0.98 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -29.32 345.20 -8.22 -37.54 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -6.44 Total: 16.19 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.30 Total: 3.22 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.27 Total: -48.43 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.39 Total: -29.13 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.32 -8.22 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.087 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds