Wall clock time and date at job start Tue Mar 31 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 120.00272 * 2 1 4 4 C 1.53002 * 109.46947 * 124.99808 * 3 2 1 5 5 H 1.08998 * 109.47038 * 55.00540 * 4 3 2 6 6 C 1.53001 * 109.46900 * 175.00210 * 4 3 2 7 7 C 1.53000 * 109.47346 * 185.00181 * 6 4 3 8 8 N 1.46497 * 109.47381 * 294.99999 * 4 3 2 9 9 C 1.34780 * 119.99824 * 155.00058 * 8 4 3 10 10 O 1.21576 * 120.00157 * 0.02562 * 9 8 4 11 11 N 1.34783 * 119.99353 * 180.02562 * 9 8 4 12 12 C 1.47416 * 125.65197 * 359.97438 * 11 9 8 13 13 C 1.54915 * 104.83222 * 155.91128 * 12 11 9 14 14 C 1.55150 * 101.58155 * 37.00692 * 13 12 11 15 15 O 1.42902 * 110.72125 * 83.04251 * 14 13 12 16 16 C 1.50702 * 110.71940 * 206.13740 * 14 13 12 17 17 H 1.07995 * 119.99831 * 356.76549 * 16 14 13 18 18 C 1.37880 * 119.99776 * 176.49168 * 16 14 13 19 19 N 1.31518 * 119.99950 * 354.18565 * 18 16 14 20 20 Si 1.86802 * 119.99793 * 174.18124 * 18 16 14 21 21 H 1.48503 * 109.46825 * 94.99217 * 20 18 16 22 22 H 1.48502 * 109.46898 * 214.98837 * 20 18 16 23 23 H 1.48497 * 109.47244 * 334.99396 * 20 18 16 24 24 C 1.47317 * 125.61146 * 180.20157 * 11 9 8 25 25 H 1.08004 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00210 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99911 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46854 * 5.00417 * 3 2 1 29 29 H 1.08998 * 109.46936 * 244.99785 * 3 2 1 30 30 H 1.09005 * 109.47269 * 305.00065 * 6 4 3 31 31 H 1.08992 * 109.47502 * 65.00065 * 6 4 3 32 32 H 1.08992 * 109.47594 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46842 * 300.00146 * 7 6 4 34 34 H 1.09005 * 109.47045 * 59.99460 * 7 6 4 35 35 H 0.97002 * 119.99726 * 335.00778 * 8 4 3 36 36 H 1.09003 * 110.36999 * 37.07370 * 12 11 9 37 37 H 1.09002 * 110.37030 * 274.74555 * 12 11 9 38 38 H 1.09004 * 111.00121 * 278.93593 * 13 12 11 39 39 H 1.09001 * 111.00417 * 155.08680 * 13 12 11 40 40 H 0.96697 * 113.99890 * 182.44319 * 15 14 13 41 41 H 0.96998 * 119.99682 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.06326 * 61.67614 * 24 11 9 43 43 H 1.09005 * 109.85312 * 300.42256 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6827 0.4573 1.1403 6 6 3.8876 2.6015 1.1111 7 6 4.9420 2.5698 2.2193 8 7 2.2786 1.3223 2.4362 9 6 2.8474 0.8474 3.5620 10 8 3.9884 0.4284 3.5366 11 7 2.1512 0.8371 4.7161 12 6 0.7667 1.3131 4.8886 13 6 0.2375 0.5522 6.1299 14 6 1.4998 0.5104 7.0311 15 8 1.6375 1.7287 7.7652 16 6 1.4485 -0.6704 7.9661 17 1 0.5811 -1.3137 7.9764 18 6 2.5114 -0.9326 8.8043 19 7 3.6148 -0.2234 8.7087 20 14 2.3840 -2.2951 10.0759 21 1 2.9691 -3.5434 9.5240 22 1 3.1253 -1.9001 11.3005 23 1 0.9563 -2.5249 10.4138 24 6 2.6502 0.3525 6.0147 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0896 29 1 2.6213 1.4025 -0.9314 30 1 4.3817 2.6538 0.1409 31 1 3.2498 3.4757 1.2415 32 1 5.5491 3.4736 2.1693 33 1 4.4479 2.5175 3.1895 34 1 5.5799 1.6955 2.0889 35 1 1.3683 1.6569 2.4565 36 1 0.1691 1.0682 4.0104 37 1 0.7547 2.3880 5.0690 38 1 -0.0855 -0.4541 5.8630 39 1 -0.5689 1.1046 6.6123 40 1 2.4314 1.7685 8.3158 41 1 4.3624 -0.4076 9.2987 42 1 3.5081 0.9459 6.3306 43 1 2.9324 -0.6973 5.9344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592018276.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:11 Heat of formation + Delta-G solvation = -67.225273 kcal Electronic energy + Delta-G solvation = -23409.376782 eV Core-core repulsion = 20068.794466 eV Total energy + Delta-G solvation = -3340.582316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85825 -37.86503 -36.35071 -34.24996 -33.68961 -32.21127 -31.95165 -29.80780 -28.64470 -27.63835 -25.03364 -23.70672 -22.65956 -20.78862 -20.01398 -19.59854 -19.32274 -17.44717 -17.02388 -16.33104 -15.44473 -15.16584 -14.97884 -14.47000 -14.15858 -13.97427 -13.59358 -13.42720 -12.99156 -12.80030 -12.72434 -12.44407 -12.16096 -11.97037 -11.67686 -11.42455 -11.32111 -11.09175 -11.00369 -10.82033 -10.73549 -10.63751 -10.61656 -10.49063 -10.15048 -9.50704 -9.40966 -9.25697 -8.69203 -8.65405 -8.28510 -7.68277 -6.25973 -4.34497 2.19069 3.19628 3.23730 3.30362 3.33937 3.83279 4.28488 4.51375 4.61123 4.88976 5.01013 5.04504 5.25260 5.32563 5.40093 5.41795 5.60854 5.63697 5.72878 5.79224 5.81617 5.92581 6.03739 6.08765 6.14906 6.16831 6.38428 6.52242 6.54183 6.63706 6.74120 6.76078 6.93106 6.94510 7.05559 7.33631 7.35847 7.72967 7.75421 8.05892 8.61462 8.70185 9.23582 9.30926 9.37621 10.81135 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.004535 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.818439 B = 6172.834226 C = 6591.956966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.102 4.102 4 C 0.167 3.833 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.143 4.143 8 N -0.744 5.744 9 C 0.716 3.284 10 O -0.592 6.592 11 N -0.632 5.632 12 C 0.104 3.896 13 C -0.115 4.115 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.891 5.891 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.127 3.873 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.390 0.610 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.381 0.619 41 H 0.269 0.731 42 H 0.062 0.938 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 4.385 -15.005 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.164 4.164 3 C -0.139 4.139 4 C 0.062 3.938 5 H 0.106 0.894 6 C -0.171 4.171 7 C -0.201 4.201 8 N -0.400 5.400 9 C 0.418 3.582 10 O -0.471 6.471 11 N -0.370 5.370 12 C -0.019 4.019 13 C -0.153 4.153 14 C 0.206 3.794 15 O -0.393 6.393 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.133 4.133 19 N -0.530 5.530 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.197 1.197 24 C 0.005 3.995 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.224 0.776 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.230 0.770 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.897 4.224 -15.293 16.338 hybrid contribution 0.110 -0.735 0.985 1.234 sum -3.786 3.490 -14.308 15.206 Atomic orbital electron populations 1.23800 0.95879 1.01717 1.02030 1.22912 0.96045 0.98389 0.99004 1.21094 0.98567 0.95858 0.98417 1.20751 0.92273 0.98959 0.81851 0.89446 1.21977 0.98047 0.97659 0.99450 1.21774 0.98342 1.00548 0.99387 1.45178 1.17516 1.69444 1.07909 1.15480 0.84149 0.79018 0.79522 1.90883 1.16980 1.54530 1.84727 1.48072 1.14585 1.65482 1.08842 1.22195 0.82943 0.98484 0.98284 1.22712 0.98754 0.99644 0.94222 1.19507 0.88316 0.83882 0.87654 1.86108 1.49573 1.40068 1.63554 1.21501 1.03364 1.11668 1.21178 0.91591 1.25071 0.94648 0.96422 0.97113 1.69769 1.03943 1.40816 1.38462 0.86418 0.78331 0.81591 0.80749 1.20549 1.20925 1.19660 1.22871 0.98815 0.98919 0.78928 0.88742 0.88627 0.87387 0.91097 0.89560 0.91698 0.92269 0.94204 0.91827 0.92247 0.77608 0.92747 0.92232 0.90601 0.90716 0.76954 0.92065 0.91917 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 14.32 29.02 0.42 -1.42 16 2 C -0.15 -1.46 9.25 -36.02 -0.33 -1.79 16 3 C -0.10 -0.94 5.20 -27.88 -0.15 -1.08 16 4 C 0.17 2.09 2.24 -67.93 -0.15 1.94 16 5 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 6 C -0.13 -1.57 5.61 -26.73 -0.15 -1.72 16 7 C -0.14 -2.17 8.51 37.16 0.32 -1.85 16 8 N -0.74 -10.96 4.70 -58.68 -0.28 -11.24 16 9 C 0.72 14.20 7.06 -86.91 -0.61 13.59 16 10 O -0.59 -13.74 13.80 5.30 0.07 -13.66 16 11 N -0.63 -13.08 3.33 -176.00 -0.59 -13.67 16 12 C 0.10 1.83 6.57 -2.53 -0.02 1.81 16 13 C -0.12 -2.29 6.23 -24.58 -0.15 -2.44 16 14 C 0.25 5.96 0.85 -89.94 -0.08 5.89 16 15 O -0.58 -14.61 13.08 -35.23 -0.46 -15.07 16 16 C -0.54 -14.12 8.11 -34.44 -0.28 -14.40 16 17 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 18 C 0.07 1.86 5.25 -17.82 -0.09 1.76 16 19 N -0.89 -23.89 10.98 55.43 0.61 -23.28 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.13 3.10 5.22 -2.90 -0.02 3.09 16 25 H 0.09 0.78 7.84 -52.48 -0.41 0.37 16 26 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.07 0.59 7.79 -51.93 -0.40 0.18 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.18 5.64 -51.93 -0.29 0.89 16 34 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 35 H 0.39 5.01 7.08 -40.82 -0.29 4.72 16 36 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.38 9.74 7.53 45.56 0.34 10.09 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.06 1.69 7.90 -51.93 -0.41 1.28 16 43 H 0.06 1.73 7.81 -51.93 -0.41 1.32 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -29.28 344.60 -8.16 -37.44 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -6.39 Total: 15.43 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.25 Total: -48.18 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.39 Total: -28.73 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.28 -8.16 -37.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592018276.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.788 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds