Wall clock time and date at job start Tue Mar 31 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00098 * 2 1 4 4 C 1.53003 * 109.47139 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47434 * 240.00462 * 3 2 1 6 6 C 1.53002 * 109.46987 * 120.00292 * 3 2 1 7 7 N 1.46494 * 109.47141 * 180.02562 * 6 3 2 8 8 C 1.34778 * 120.00085 * 179.97438 * 7 6 3 9 9 O 1.21592 * 120.00153 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00234 * 179.97438 * 8 7 6 11 11 C 1.47020 * 125.64631 * 359.69659 * 10 8 7 12 12 C 1.54333 * 107.26560 * 178.84312 * 11 10 8 13 13 C 1.55155 * 103.02328 * 338.14323 * 12 11 10 14 14 O 1.42900 * 111.00372 * 277.23364 * 13 12 11 15 15 C 1.50691 * 111.04101 * 153.39271 * 13 12 11 16 16 H 1.08006 * 120.00250 * 272.60670 * 15 13 12 17 17 C 1.37875 * 120.00310 * 92.61191 * 15 13 12 18 18 N 1.31510 * 120.00513 * 173.52245 * 17 15 13 19 19 Si 1.86802 * 119.99732 * 353.51459 * 17 15 13 20 20 H 1.48500 * 109.46714 * 87.32636 * 19 17 15 21 21 H 1.48497 * 109.47211 * 207.32256 * 19 17 15 22 22 H 1.48501 * 109.47213 * 327.33034 * 19 17 15 23 23 C 1.47419 * 125.64756 * 179.97438 * 10 8 7 24 24 H 1.08001 * 119.99713 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99723 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99713 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47259 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46493 * 299.99789 * 4 3 2 29 29 H 1.08995 * 109.47505 * 59.99383 * 4 3 2 30 30 H 1.09001 * 109.46767 * 299.99765 * 5 3 2 31 31 H 1.08994 * 109.47363 * 59.99851 * 5 3 2 32 32 H 1.09004 * 109.47527 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46949 * 59.99862 * 6 3 2 34 34 H 1.09005 * 109.46812 * 300.00151 * 6 3 2 35 35 H 0.96998 * 120.00118 * 359.97438 * 7 6 3 36 36 H 1.09000 * 109.88227 * 298.39420 * 11 10 8 37 37 H 1.09006 * 109.88114 * 59.55800 * 11 10 8 38 38 H 1.08999 * 110.85261 * 219.67316 * 12 11 10 39 39 H 1.08999 * 110.51231 * 96.45317 * 12 11 10 40 40 H 0.96696 * 114.00153 * 168.40146 * 14 13 12 41 41 H 0.96999 * 120.00681 * 179.97438 * 18 17 15 42 42 H 1.08999 * 110.36942 * 322.93175 * 23 10 8 43 43 H 1.09005 * 110.36927 * 85.15093 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9432 1.3861 1.2492 7 7 3.6753 2.6550 1.2496 8 6 4.5172 2.9470 2.2607 9 8 4.6696 2.1570 3.1724 10 7 5.1911 4.1142 2.2608 11 6 5.1074 5.1520 1.2227 12 6 6.0258 6.3126 1.6603 13 6 6.1461 6.1045 3.1931 14 8 5.0253 6.6696 3.8762 15 6 7.4384 6.6758 3.7168 16 1 8.3337 6.0716 3.7206 17 6 7.4781 7.9697 4.1914 18 7 8.5698 8.4267 4.7648 19 14 5.9810 9.0738 4.0195 20 1 5.0842 8.8766 5.1866 21 1 6.4161 10.4925 3.9637 22 1 5.2528 8.7297 2.7719 23 6 6.1386 4.5592 3.2988 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.6143 3.4120 0.0002 28 1 0.4424 2.4104 -0.8892 29 1 0.4429 2.4101 0.8907 30 1 3.6514 0.5578 -1.2493 31 1 2.3165 1.3285 -2.1392 32 1 3.4885 2.3300 -1.2490 33 1 3.6515 0.5575 1.2492 34 1 2.3165 1.3283 2.1392 35 1 3.5541 3.2850 0.5221 36 1 5.4450 4.7492 0.2678 37 1 4.0805 5.5070 1.1355 38 1 5.5670 7.2758 1.4367 39 1 7.0016 6.2287 1.1819 40 1 4.9628 6.4150 4.8070 41 1 8.5978 9.3372 5.0983 42 1 5.7944 4.2481 4.2852 43 1 7.1332 4.1592 3.1013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592031369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:04 Heat of formation + Delta-G solvation = -57.520388 kcal Electronic energy + Delta-G solvation = -23055.704969 eV Core-core repulsion = 19715.543488 eV Total energy + Delta-G solvation = -3340.161481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08600 -38.61564 -37.43475 -34.70497 -33.88424 -32.36931 -30.99780 -30.11117 -28.37134 -27.63939 -26.72382 -24.87768 -22.75919 -21.82273 -19.85066 -19.77676 -18.59061 -17.84436 -17.38984 -15.96253 -15.76368 -15.63059 -15.07454 -14.83017 -14.78345 -14.48617 -13.87668 -13.67629 -13.52577 -13.23987 -12.68560 -12.51477 -12.36486 -12.17269 -12.00701 -11.93320 -11.62742 -11.55163 -11.35963 -11.11364 -11.02041 -10.91373 -10.49979 -10.38653 -10.20510 -9.84247 -9.65265 -9.23674 -8.96088 -8.66691 -8.52608 -7.98147 -6.19266 -4.31317 1.97520 2.97353 3.45713 3.51876 3.54410 3.68766 4.25256 4.44893 4.47547 4.49755 4.62480 4.93744 5.01784 5.04956 5.14300 5.30410 5.33763 5.43787 5.49703 5.50550 5.56092 5.68457 5.71507 5.77297 5.79391 5.87163 5.96751 6.00208 6.09851 6.32058 6.48468 6.50072 6.54378 6.63575 6.66654 6.72557 7.05416 7.34713 7.48953 8.12593 8.30214 8.62474 8.81743 8.91778 9.42216 10.89608 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.003777 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.901720 B = 7412.437478 C = 7623.369042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C -0.051 4.051 4 C -0.146 4.146 5 C -0.138 4.138 6 C 0.155 3.845 7 N -0.747 5.747 8 C 0.718 3.282 9 O -0.599 6.599 10 N -0.629 5.629 11 C 0.102 3.898 12 C -0.120 4.120 13 C 0.219 3.781 14 O -0.559 6.559 15 C -0.552 4.552 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.888 5.888 19 Si 0.952 3.048 20 H -0.293 1.293 21 H -0.327 1.327 22 H -0.270 1.270 23 C 0.109 3.891 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.394 0.606 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.371 0.629 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.202 -11.760 -12.395 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.159 4.159 3 C -0.051 4.051 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.030 3.970 7 N -0.405 5.405 8 C 0.420 3.580 9 O -0.478 6.478 10 N -0.366 5.366 11 C -0.022 4.022 12 C -0.158 4.158 13 C 0.179 3.821 14 O -0.367 6.367 15 C -0.589 4.589 16 H 0.100 0.900 17 C -0.131 4.131 18 N -0.523 5.523 19 Si 0.788 3.212 20 H -0.221 1.221 21 H -0.258 1.258 22 H -0.196 1.196 23 C -0.014 4.014 24 H 0.122 0.878 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.219 0.781 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.118 -12.036 -12.213 22.211 hybrid contribution -0.605 0.604 0.117 0.863 sum -14.723 -11.432 -12.096 22.221 Atomic orbital electron populations 1.24021 0.96079 1.02201 1.00711 1.22765 0.95827 0.97226 1.00078 1.19925 0.95482 0.94159 0.95544 1.21976 0.98839 0.97305 1.02158 1.21823 0.99154 1.02318 0.96238 1.21080 0.93785 0.85483 0.96636 1.45136 1.47634 1.21866 1.25827 1.15463 0.78831 0.81221 0.82450 1.90889 1.69913 1.49341 1.37644 1.47702 1.45940 1.16833 1.26094 1.22043 1.00210 0.89531 0.90394 1.22945 0.98976 0.96567 0.97290 1.20245 0.85536 0.87093 0.89237 1.86101 1.50399 1.72699 1.27502 1.21108 0.94335 0.99486 1.43977 0.90049 1.25115 0.97080 0.98131 0.92752 1.69966 1.28458 1.17169 1.36702 0.85633 0.80635 0.75450 0.79520 1.22079 1.25839 1.19608 1.22975 0.91221 0.96940 0.90281 0.87813 0.88507 0.87108 0.92298 0.92065 0.91958 0.92128 0.92258 0.92290 0.91663 0.91698 0.77120 0.92831 0.92592 0.90201 0.89630 0.78058 0.92400 0.91241 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 13.70 29.01 0.40 -1.00 16 2 C -0.14 -1.12 8.76 -36.03 -0.32 -1.43 16 3 C -0.05 -0.44 0.75 -155.66 -0.12 -0.55 16 4 C -0.15 -1.19 6.95 37.16 0.26 -0.93 16 5 C -0.14 -1.09 8.28 37.15 0.31 -0.78 16 6 C 0.15 1.82 4.55 -4.04 -0.02 1.80 16 7 N -0.75 -10.09 4.92 -65.22 -0.32 -10.41 16 8 C 0.72 13.08 8.49 -86.91 -0.74 12.34 16 9 O -0.60 -13.10 16.60 5.28 0.09 -13.02 16 10 N -0.63 -11.46 3.33 -176.24 -0.59 -12.05 16 11 C 0.10 1.61 6.15 -3.06 -0.02 1.59 16 12 C -0.12 -2.28 5.90 -24.89 -0.15 -2.42 16 13 C 0.22 4.78 0.70 -89.63 -0.06 4.72 16 14 O -0.56 -12.11 8.52 -35.23 -0.30 -12.41 16 15 C -0.55 -14.44 8.89 -34.45 -0.31 -14.75 16 16 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 17 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 18 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 19 Si 0.95 23.15 24.93 -169.99 -4.24 18.91 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.27 -6.38 5.42 56.52 0.31 -6.07 16 23 C 0.11 2.22 6.07 -2.54 -0.02 2.21 16 24 H 0.10 0.71 5.69 -52.49 -0.30 0.42 16 25 H 0.10 0.60 8.06 -52.49 -0.42 0.17 16 26 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 27 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 28 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 29 H 0.06 0.53 7.50 -51.93 -0.39 0.14 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.39 4.51 5.15 -40.82 -0.21 4.30 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.55 6.65 -51.93 -0.35 1.21 16 39 H 0.09 1.59 8.03 -51.93 -0.42 1.18 16 40 H 0.37 7.28 8.98 45.56 0.41 7.69 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 1.47 8.02 -51.93 -0.42 1.05 16 43 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -32.03 337.03 -6.59 -38.63 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.22 Total: 7.90 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.87 Total: 2.74 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.13 Total: -47.84 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.21 Total: -25.43 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.24 Total: 18.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.03 -6.59 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592031369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.893 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds