Wall clock time and date at job start Tue Mar 31 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46866 * 2 1 4 4 H 1.08997 * 115.56763 * 29.31447 * 3 2 1 5 5 C 1.53004 * 117.49865 * 243.62126 * 3 2 1 6 6 C 1.52999 * 60.00229 * 252.51472 * 5 3 2 7 7 H 1.08997 * 117.49923 * 107.51480 * 6 5 3 8 8 C 1.52995 * 117.49765 * 252.51316 * 6 5 3 9 9 N 1.46505 * 109.46967 * 243.60822 * 8 6 5 10 10 C 1.34777 * 119.99978 * 180.02562 * 9 8 6 11 11 O 1.21588 * 120.00085 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00055 * 179.97438 * 10 9 8 13 13 C 1.47028 * 125.64723 * 0.04029 * 12 10 9 14 14 C 1.54327 * 107.26846 * 181.02411 * 13 12 10 15 15 C 1.55154 * 102.94479 * 22.19464 * 14 13 12 16 16 O 1.42893 * 111.00673 * 82.57146 * 15 14 13 17 17 C 1.50703 * 111.00301 * 206.42329 * 15 14 13 18 18 H 1.08003 * 119.99757 * 116.91383 * 17 15 14 19 19 C 1.37875 * 119.99897 * 296.91334 * 17 15 14 20 20 N 1.31519 * 119.99424 * 184.37906 * 19 17 15 21 21 Si 1.86797 * 120.00085 * 4.38195 * 19 17 15 22 22 H 1.48492 * 109.47291 * 84.84876 * 21 19 17 23 23 H 1.48497 * 109.46778 * 204.84885 * 21 19 17 24 24 H 1.48503 * 109.47110 * 324.84689 * 21 19 17 25 25 C 1.47422 * 125.65091 * 179.97438 * 12 10 9 26 26 H 1.08996 * 109.47260 * 59.99499 * 1 2 3 27 27 H 1.08992 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46922 * 300.00096 * 1 2 3 29 29 H 1.08998 * 109.46727 * 240.00636 * 2 1 3 30 30 H 1.08996 * 109.47260 * 120.00501 * 2 1 3 31 31 H 1.09004 * 117.49599 * 145.02317 * 5 3 2 32 32 H 1.08999 * 117.49760 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47184 * 123.60764 * 8 6 5 34 34 H 1.09006 * 109.47418 * 3.60482 * 8 6 5 35 35 H 0.96995 * 120.00009 * 359.97438 * 9 8 6 36 36 H 1.09000 * 109.88076 * 300.43867 * 13 12 10 37 37 H 1.08994 * 109.88190 * 61.45627 * 13 12 10 38 38 H 1.08999 * 110.71717 * 263.82536 * 14 13 12 39 39 H 1.09006 * 110.71732 * 140.55604 * 14 13 12 40 40 H 0.96708 * 114.00155 * 186.35239 * 16 15 14 41 41 H 0.96999 * 119.99237 * 179.97438 * 20 19 17 42 42 H 1.09009 * 110.36673 * 37.06932 * 25 12 10 43 43 H 1.08996 * 110.46176 * 274.79465 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1718 0.4814 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6579 0.1182 7 1 4.1807 0.7722 0.1958 8 6 4.0301 2.8804 0.9031 9 7 5.4911 2.8511 1.0074 10 6 6.1399 3.8347 1.6615 11 8 5.5127 4.7467 2.1648 12 7 7.4839 3.8075 1.7579 13 6 8.3622 2.7698 1.1981 14 6 9.8110 3.1420 1.5781 15 6 9.6209 4.0638 2.8115 16 8 9.4488 3.2952 4.0038 17 6 10.7746 5.0233 2.9517 18 1 10.6051 6.0869 2.8713 19 6 12.0462 4.5432 3.1826 20 7 13.0379 5.3817 3.3906 21 14 12.3607 2.7019 3.1998 22 1 12.5829 2.2247 1.8113 23 1 13.5636 2.4130 4.0211 24 1 11.1854 2.0045 3.7808 25 6 8.3169 4.8140 2.4408 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.7212 2.9429 -1.5343 32 1 3.0092 1.1860 -2.0159 33 1 3.5941 2.8648 1.9021 34 1 3.7209 3.7887 0.3858 35 1 5.9914 2.1233 0.6062 36 1 8.1057 1.7989 1.6218 37 1 8.2569 2.7404 0.1137 38 1 10.2965 3.6812 0.7647 39 1 10.3802 2.2518 1.8460 40 1 9.2302 3.8231 4.7840 41 1 13.9324 5.0439 3.5534 42 1 7.8170 5.1730 3.3405 43 1 8.5349 5.6460 1.7713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592031650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:39 Heat of formation + Delta-G solvation = -53.572536 kcal Electronic energy + Delta-G solvation = -22354.703165 eV Core-core repulsion = 19014.712876 eV Total energy + Delta-G solvation = -3339.990289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94920 -38.61359 -37.55562 -34.48622 -34.34562 -32.43300 -32.25496 -30.30662 -28.41453 -26.98943 -24.78129 -24.09353 -22.53129 -21.21544 -20.84603 -19.88287 -19.52745 -17.88642 -17.22735 -16.19439 -15.62304 -15.28022 -15.05577 -14.79229 -14.70164 -14.30724 -14.21950 -13.71849 -13.38161 -13.22593 -12.85743 -12.54181 -12.48918 -12.42093 -11.99528 -11.75496 -11.63023 -11.55831 -11.34706 -11.30803 -11.08822 -10.56318 -10.37586 -10.30046 -10.20811 -10.11015 -9.75164 -9.03293 -8.94525 -8.76186 -8.52623 -7.95807 -6.22328 -4.34070 2.88358 3.27733 3.40458 3.43698 3.56057 3.59535 4.16065 4.35086 4.41191 4.51465 4.63652 4.83336 4.96763 5.00896 5.07492 5.11435 5.16403 5.33494 5.38715 5.49240 5.54478 5.56369 5.64615 5.68392 5.73934 5.75815 5.79220 5.85298 5.93990 6.04812 6.10781 6.46389 6.56783 6.61815 6.64598 6.65208 7.11434 7.35228 7.50797 8.18724 8.30898 8.73487 8.90628 8.91797 9.41064 10.88111 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.003188 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.947046 B = 8782.001342 C = 9104.587477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.141 4.141 4 H 0.107 0.893 5 C -0.172 4.172 6 C -0.164 4.164 7 H 0.109 0.891 8 C 0.172 3.828 9 N -0.747 5.747 10 C 0.719 3.281 11 O -0.599 6.599 12 N -0.627 5.627 13 C 0.105 3.895 14 C -0.124 4.124 15 C 0.216 3.784 16 O -0.571 6.571 17 C -0.550 4.550 18 H 0.079 0.921 19 C 0.089 3.911 20 N -0.887 5.887 21 Si 0.875 3.125 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.228 1.228 25 C 0.111 3.889 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.365 0.635 41 H 0.267 0.733 42 H 0.068 0.932 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.705 -11.292 -8.474 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.159 4.159 4 H 0.125 0.875 5 C -0.209 4.209 6 C -0.183 4.183 7 H 0.127 0.873 8 C 0.048 3.952 9 N -0.404 5.404 10 C 0.421 3.579 11 O -0.479 6.479 12 N -0.364 5.364 13 C -0.019 4.019 14 C -0.162 4.162 15 C 0.175 3.825 16 O -0.377 6.377 17 C -0.588 4.588 18 H 0.097 0.903 19 C -0.116 4.116 20 N -0.523 5.523 21 Si 0.703 3.297 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.151 1.151 25 C -0.011 4.011 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.212 0.788 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.949 -11.067 -8.479 23.525 hybrid contribution 0.577 -0.773 0.046 0.966 sum -18.372 -11.840 -8.433 23.427 Atomic orbital electron populations 1.21746 0.95393 1.01582 1.01995 1.21133 0.96046 0.93986 1.02056 1.22482 0.92751 0.98337 1.02371 0.87451 1.23261 1.03696 1.02596 0.91322 1.22573 0.95608 0.99891 1.00227 0.87282 1.20639 0.79165 0.95830 0.99602 1.45065 1.07069 1.27421 1.60831 1.15437 0.80604 0.82379 0.79470 1.90885 1.65918 1.37204 1.53864 1.47680 1.03217 1.27335 1.58157 1.21986 0.91875 0.91121 0.96872 1.22933 0.93427 1.00545 0.99297 1.20131 0.91252 0.88278 0.82827 1.86486 1.92959 1.39080 1.19195 1.21125 0.90686 0.94228 1.52715 0.90252 1.24940 0.95712 0.98465 0.92525 1.69935 1.00986 1.35213 1.46136 0.87062 0.78393 0.86336 0.77897 1.20998 1.22749 1.15076 1.22894 0.90935 0.90735 0.96556 0.92615 0.92738 0.92578 0.91856 0.91518 0.88544 0.88701 0.91475 0.91697 0.77128 0.92419 0.92595 0.89247 0.90883 0.78796 0.92346 0.91313 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.87 37.16 0.37 -0.52 16 2 C -0.09 -0.63 6.22 -26.73 -0.17 -0.79 16 3 C -0.14 -1.07 5.46 -90.61 -0.49 -1.56 16 4 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 5 C -0.17 -1.32 9.82 -26.73 -0.26 -1.58 16 6 C -0.16 -1.43 5.57 -90.62 -0.50 -1.93 16 7 H 0.11 0.89 8.04 -51.93 -0.42 0.48 16 8 C 0.17 2.03 5.96 -4.04 -0.02 2.01 16 9 N -0.75 -10.36 5.52 -65.22 -0.36 -10.72 16 10 C 0.72 13.33 8.49 -86.92 -0.74 12.59 16 11 O -0.60 -13.23 16.60 5.29 0.09 -13.14 16 12 N -0.63 -11.70 3.33 -176.22 -0.59 -12.29 16 13 C 0.10 1.72 6.15 -3.06 -0.02 1.70 16 14 C -0.12 -2.46 4.79 -24.90 -0.12 -2.58 16 15 C 0.22 4.79 0.69 -89.61 -0.06 4.73 16 16 O -0.57 -12.57 10.49 -35.23 -0.37 -12.94 16 17 C -0.55 -14.51 8.86 -34.44 -0.31 -14.81 16 18 H 0.08 2.28 8.03 -52.48 -0.42 1.86 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 21 Si 0.88 20.91 23.97 -169.99 -4.08 16.83 16 22 H -0.28 -6.53 7.10 56.52 0.40 -6.13 16 23 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.23 -5.34 5.49 56.52 0.31 -5.03 16 25 C 0.11 2.32 6.08 -2.52 -0.02 2.30 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.39 7.87 -51.93 -0.41 -0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.75 8.03 -51.93 -0.42 0.34 16 32 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 35 H 0.39 4.59 7.38 -40.82 -0.30 4.29 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.76 8.03 -51.93 -0.42 1.34 16 39 H 0.07 1.47 5.10 -51.93 -0.26 1.21 16 40 H 0.36 7.16 9.11 45.56 0.41 7.57 16 41 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 1.46 8.04 -51.92 -0.42 1.05 16 43 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -32.05 343.92 -8.29 -40.34 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.50 Total: 10.11 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -2.44 Total: 1.90 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.17 Total: -48.28 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.28 Total: -26.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.08 Total: 16.83 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.05 -8.29 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592031650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.234 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds