Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 H 1.09006 * 109.47211 * 305.00016 * 3 2 1 5 5 N 1.46507 * 109.46887 * 64.99751 * 3 2 1 6 6 C 1.34782 * 119.99662 * 205.00296 * 5 3 2 7 7 O 1.21590 * 119.99977 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99817 * 180.02562 * 6 5 3 9 9 C 1.47021 * 125.64937 * 359.94913 * 8 6 5 10 10 C 1.54370 * 107.28813 * 181.13182 * 9 8 6 11 11 C 1.55147 * 102.92092 * 22.14333 * 10 9 8 12 12 O 1.42905 * 111.00578 * 82.63751 * 11 10 9 13 13 C 1.50702 * 111.00308 * 206.45025 * 11 10 9 14 14 H 1.08002 * 120.00299 * 356.82421 * 13 11 10 15 15 C 1.37884 * 119.99942 * 176.53980 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.47423 * 125.64837 * 179.97438 * 8 6 5 22 22 C 1.52998 * 109.47423 * 185.00023 * 3 2 1 23 23 C 1.53004 * 117.49668 * 248.62448 * 22 3 2 24 24 C 1.53005 * 117.50035 * 180.02562 * 22 3 2 25 25 H 1.09003 * 109.47046 * 300.00246 * 1 2 3 26 26 H 1.08997 * 109.46535 * 59.99734 * 1 2 3 27 27 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47354 * 239.99496 * 2 1 3 29 29 H 1.09006 * 109.47078 * 120.00063 * 2 1 3 30 30 H 0.96995 * 120.00225 * 25.00863 * 5 3 2 31 31 H 1.09001 * 109.88518 * 300.52094 * 9 8 6 32 32 H 1.09002 * 109.88165 * 61.68403 * 9 8 6 33 33 H 1.09001 * 110.70699 * 263.79361 * 10 9 8 34 34 H 1.09008 * 110.75075 * 140.51110 * 10 9 8 35 35 H 0.96701 * 113.99475 * 183.17547 * 12 11 10 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.08996 * 110.36708 * 36.99367 * 21 8 6 38 38 H 1.08999 * 110.36888 * 274.67114 * 21 8 6 39 39 H 1.09000 * 115.54802 * 34.32720 * 22 3 2 40 40 H 1.08997 * 117.49790 * 359.97438 * 23 22 3 41 41 H 1.09000 * 117.50076 * 145.02190 * 23 22 3 42 42 H 1.08991 * 117.49756 * 214.97965 * 24 22 3 43 43 H 1.08994 * 117.49568 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 7 1.6525 2.0975 1.2519 6 6 1.5256 3.4384 1.2996 7 8 1.7334 4.1045 0.3038 8 7 1.1696 4.0410 2.4513 9 6 0.8897 3.3600 3.7238 10 6 0.4964 4.4456 4.7484 11 6 0.0292 5.6195 3.8479 12 8 -1.3279 5.4413 3.4371 13 6 0.2096 6.9420 4.5476 14 1 0.5706 6.9698 5.5651 15 6 -0.0807 8.1168 3.8868 16 7 -0.5203 8.0829 2.6477 17 14 0.1502 9.7563 4.7515 18 1 1.5728 9.9104 5.1489 19 1 -0.2295 10.8588 3.8319 20 1 -0.7096 9.8034 5.9614 21 6 0.9956 5.4923 2.6436 22 6 3.5649 1.4443 -0.1257 23 6 4.3734 1.9029 1.0896 24 6 4.2707 2.8017 -0.1437 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.4872 1.5661 2.0463 31 1 0.0667 2.6571 3.5950 32 1 1.7803 2.8325 4.0656 33 1 1.3575 4.7391 5.3487 34 1 -0.3184 4.0994 5.3843 35 1 -1.6490 6.1251 2.8334 36 1 -0.7248 8.9095 2.1830 37 1 0.5548 5.9427 1.7543 38 1 1.9521 5.9619 2.8732 39 1 3.9869 0.6492 -0.7404 40 1 3.8189 2.2036 1.9785 41 1 5.3275 1.4095 1.2748 42 1 5.1571 2.8998 -0.7703 43 1 3.6486 3.6934 -0.0665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596838355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -56.188668 kcal Electronic energy + Delta-G solvation = -23658.878209 eV Core-core repulsion = 20318.774475 eV Total energy + Delta-G solvation = -3340.103733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.08606 -38.14350 -36.59344 -34.54261 -34.17121 -32.17558 -32.00874 -29.90754 -27.82910 -26.85210 -24.86948 -22.66568 -22.31652 -21.65977 -20.18858 -19.57462 -19.39039 -17.49239 -17.03279 -16.27224 -15.91403 -15.04516 -14.84418 -14.43638 -14.28910 -14.14001 -13.75885 -13.19878 -13.00600 -12.80317 -12.70608 -12.29526 -12.03310 -11.63775 -11.49072 -11.44084 -11.34513 -11.20658 -11.02730 -10.98911 -10.78735 -10.58223 -10.48702 -10.17690 -10.14373 -9.75971 -9.51832 -9.35282 -8.67695 -8.66140 -8.34858 -7.65716 -6.26645 -4.36380 3.16054 3.24001 3.29056 3.30922 3.75974 4.00763 4.26901 4.48340 4.66910 4.96754 5.00476 5.04183 5.19634 5.22233 5.34590 5.42207 5.57461 5.65737 5.70986 5.74068 5.81692 5.86092 5.87306 6.02850 6.04936 6.10057 6.18219 6.22996 6.31354 6.52344 6.64395 6.72486 6.89590 6.90602 7.00797 7.25866 7.34773 7.69253 7.76052 8.03981 8.57788 8.68059 9.18903 9.32602 9.43098 10.80501 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025241 B = 0.004626 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.018472 B = 6050.839547 C = 6412.484267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C 0.193 3.807 4 H 0.090 0.910 5 N -0.743 5.743 6 C 0.717 3.283 7 O -0.592 6.592 8 N -0.628 5.628 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.539 4.539 14 H 0.066 0.934 15 C 0.072 3.928 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.114 3.886 22 C -0.172 4.172 23 C -0.175 4.175 24 C -0.184 4.184 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.392 0.608 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.383 0.617 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -14.478 -2.308 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.087 3.913 4 H 0.108 0.892 5 N -0.399 5.399 6 C 0.420 3.580 7 O -0.472 6.472 8 N -0.364 5.364 9 C -0.018 4.018 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.393 6.393 13 C -0.578 4.578 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.008 4.008 22 C -0.192 4.192 23 C -0.213 4.213 24 C -0.221 4.221 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.225 0.775 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.189 -14.408 -2.886 15.583 hybrid contribution 0.166 1.077 0.426 1.170 sum 5.355 -13.331 -2.460 14.575 Atomic orbital electron populations 1.21767 0.95261 1.01323 1.02625 1.21760 0.96434 0.95469 1.02653 1.20278 0.91392 0.92384 0.87217 0.89248 1.45218 1.75679 1.05612 1.13390 1.15516 0.78157 0.81449 0.82901 1.90814 1.58569 1.63858 1.33954 1.47923 1.70617 1.09899 1.07961 1.21916 0.98387 0.96211 0.85254 1.22599 1.00697 0.95310 0.96807 1.19608 0.79752 0.91478 0.88315 1.86079 1.29003 1.54959 1.69254 1.21444 1.45957 0.90224 1.00156 0.91603 1.25074 0.93630 0.99755 0.94692 1.69652 1.44103 1.28913 1.10496 0.86466 0.78777 0.82296 0.79384 1.20014 1.21074 1.20013 1.23120 0.99869 0.75836 1.02022 1.22794 0.94479 0.99111 1.02778 1.22846 1.00661 1.04540 0.93226 1.23369 1.02445 0.96045 1.00193 0.92362 0.92542 0.92809 0.90659 0.91554 0.77462 0.92746 0.93284 0.90499 0.90831 0.76588 0.91890 0.89896 0.92594 0.87873 0.88873 0.89799 0.89926 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.80 37.16 0.36 -1.16 16 2 C -0.13 -1.20 5.45 -26.73 -0.15 -1.34 16 3 C 0.19 2.50 2.43 -67.93 -0.17 2.33 16 4 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 5 N -0.74 -10.91 3.03 -58.67 -0.18 -11.09 16 6 C 0.72 14.11 7.32 -86.92 -0.64 13.47 16 7 O -0.59 -13.72 13.62 5.29 0.07 -13.65 16 8 N -0.63 -12.78 3.33 -176.19 -0.59 -13.36 16 9 C 0.11 1.82 6.15 -3.04 -0.02 1.80 16 10 C -0.12 -2.27 6.13 -24.88 -0.15 -2.43 16 11 C 0.25 5.99 0.88 -89.61 -0.08 5.91 16 12 O -0.58 -14.91 13.17 -35.23 -0.46 -15.37 16 13 C -0.54 -13.97 8.26 -34.44 -0.28 -14.26 16 14 H 0.07 1.66 7.78 -52.49 -0.41 1.26 16 15 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 16 N -0.89 -23.88 10.69 55.43 0.59 -23.29 16 17 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.11 2.73 5.50 -2.52 -0.01 2.72 16 22 C -0.17 -2.15 5.71 -90.62 -0.52 -2.67 16 23 C -0.18 -2.31 9.73 -26.75 -0.26 -2.57 16 24 C -0.18 -2.74 9.82 -26.75 -0.26 -3.00 16 25 H 0.06 0.65 7.75 -51.93 -0.40 0.25 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.39 4.98 7.59 -40.82 -0.31 4.67 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 35 H 0.38 10.15 7.26 45.56 0.33 10.48 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.08 2.26 7.47 -51.93 -0.39 1.87 16 38 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 39 H 0.10 1.08 8.11 -51.93 -0.42 0.65 16 40 H 0.09 1.35 6.66 -51.93 -0.35 1.00 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 2.34 5.01 -51.93 -0.26 2.08 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -28.81 340.03 -9.10 -37.91 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -6.37 Total: 17.84 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.27 Total: 0.59 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.17 Total: -47.74 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.39 Total: -29.03 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.81 -9.10 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596838355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.279 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds