Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 N 1.46500 * 109.46565 * 119.99792 * 2 1 3 5 5 C 1.46504 * 119.99998 * 299.99711 * 4 2 1 6 6 C 1.50700 * 109.47342 * 270.00117 * 5 4 2 7 7 H 1.08000 * 119.99960 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00012 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99920 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47114 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47011 * 120.00162 * 10 8 6 13 13 H 1.48504 * 109.47199 * 240.00082 * 10 8 6 14 14 C 1.34776 * 120.00160 * 120.00400 * 4 2 1 15 15 O 1.21286 * 119.99961 * 179.97438 * 14 4 2 16 16 C 1.50698 * 119.99922 * 359.71800 * 14 4 2 17 17 C 1.53001 * 109.47489 * 174.66321 * 16 14 4 18 18 H 1.08997 * 110.21801 * 56.09715 * 17 16 14 19 19 C 1.54488 * 110.24471 * 294.17527 * 17 16 14 20 20 C 1.54620 * 101.76459 * 215.58027 * 19 17 16 21 21 C 1.51283 * 104.19805 * 24.79776 * 20 19 17 22 22 O 1.21275 * 124.94447 * 163.77962 * 21 20 19 23 23 N 1.34425 * 110.11199 * 343.74918 * 21 20 19 24 24 C 1.46503 * 124.34960 * 179.59388 * 23 21 20 25 25 H 1.08994 * 109.47527 * 300.00799 * 1 2 3 26 26 H 1.09000 * 109.46800 * 60.00607 * 1 2 3 27 27 H 1.09004 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47240 * 239.99625 * 2 1 3 29 29 H 1.08997 * 109.46812 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46784 * 299.99403 * 3 2 1 31 31 H 1.08997 * 109.47366 * 59.99702 * 3 2 1 32 32 H 1.08997 * 109.47161 * 30.00798 * 5 4 2 33 33 H 1.09006 * 109.46757 * 150.00311 * 5 4 2 34 34 H 0.97001 * 119.99686 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47458 * 294.66604 * 16 14 4 36 36 H 1.09003 * 109.46893 * 54.66627 * 16 14 4 37 37 H 1.09001 * 110.96594 * 333.69772 * 19 17 16 38 38 H 1.09000 * 110.96770 * 97.42148 * 19 17 16 39 39 H 1.09001 * 110.48907 * 143.46998 * 20 19 17 40 40 H 1.08996 * 110.49247 * 266.12151 * 20 19 17 41 41 H 1.08994 * 109.47049 * 274.95231 * 24 23 21 42 42 H 1.09005 * 109.47198 * 34.94577 * 24 23 21 43 43 H 1.08992 * 109.47343 * 154.94681 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8019 2.9831 7 1 3.5426 1.0363 2.3456 8 6 2.5809 1.4110 4.2140 9 7 1.5581 1.1259 4.9902 10 14 3.8681 2.6410 4.7793 11 1 4.9091 2.7855 3.7301 12 1 3.2231 3.9567 5.0206 13 1 4.4950 2.1590 6.0362 14 6 2.7931 -1.7864 1.0727 15 8 3.1976 -2.3578 2.0631 16 6 3.1521 -2.3050 -0.2959 17 6 4.1390 -3.4660 -0.1588 18 1 3.7197 -4.2435 0.4798 19 6 5.4792 -2.9627 0.4220 20 6 6.5004 -3.8490 -0.3278 21 6 5.7850 -4.2434 -1.6011 22 8 6.3231 -4.7011 -2.5870 23 7 4.4661 -4.0134 -1.4805 24 6 3.4816 -4.2757 -2.5333 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 0.6903 0.2975 2.4844 33 1 1.6236 -1.0225 3.2292 34 1 1.4724 1.5541 5.8563 35 1 2.2507 -2.6521 -0.8009 36 1 3.6101 -1.5057 -0.8786 37 1 5.6333 -1.9087 0.1904 38 1 5.5276 -3.1349 1.4972 39 1 7.4023 -3.2814 -0.5573 40 1 6.7444 -4.7326 0.2620 41 1 3.4347 -3.4209 -3.2079 42 1 3.7755 -5.1641 -3.0924 43 1 2.5024 -4.4373 -2.0829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597040914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = -74.777974 kcal Electronic energy + Delta-G solvation = -23362.589067 eV Core-core repulsion = 20021.679242 eV Total energy + Delta-G solvation = -3340.909826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62001 -39.15885 -36.72504 -35.89399 -32.92325 -32.76901 -31.08464 -30.83481 -27.51795 -26.78656 -26.67846 -25.03252 -22.84706 -21.69691 -21.05077 -19.38746 -18.07713 -17.22593 -16.50183 -16.41455 -16.23157 -15.27123 -14.99191 -14.84652 -14.26015 -13.91049 -13.68320 -13.61391 -13.52489 -12.90480 -12.87628 -12.56864 -12.37526 -12.34709 -12.15691 -11.74405 -11.71979 -11.61662 -11.27254 -11.02376 -10.97133 -10.90526 -10.83737 -10.60465 -10.42112 -10.05734 -9.81704 -9.57400 -9.02793 -8.73126 -8.45694 -7.71465 -6.07127 -4.10432 2.55868 2.92138 3.26743 3.30568 3.35584 3.39203 3.84889 4.33514 4.41753 4.52813 4.73483 4.98859 5.04539 5.11204 5.18300 5.22693 5.27665 5.35572 5.38814 5.48299 5.53426 5.59701 5.65645 5.74683 5.79618 5.95272 6.09111 6.13672 6.20180 6.21231 6.31136 6.44972 6.53696 6.90475 7.04537 7.06157 7.42366 7.51037 7.89484 8.13675 8.21313 8.37399 8.86592 9.02624 9.53984 11.01049 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004881 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.150624 B = 5735.364323 C = 6520.540968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.539 6.539 16 C -0.150 4.150 17 C 0.148 3.852 18 H 0.092 0.908 19 C -0.120 4.120 20 C -0.156 4.156 21 C 0.518 3.482 22 O -0.543 6.543 23 N -0.620 5.620 24 C 0.094 3.906 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -5.603 -12.775 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.322 5.322 5 C 0.127 3.873 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.295 3.705 15 O -0.417 6.417 16 C -0.191 4.191 17 C 0.045 3.955 18 H 0.110 0.890 19 C -0.158 4.158 20 C -0.196 4.196 21 C 0.306 3.694 22 O -0.421 6.421 23 N -0.354 5.354 24 C -0.047 4.047 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.046 -6.104 -12.643 14.078 hybrid contribution 0.450 0.907 0.350 1.072 sum 1.496 -5.197 -12.293 13.430 Atomic orbital electron populations 1.22157 0.95550 1.01761 1.02523 1.21009 0.94135 0.94199 0.87886 1.22139 1.01348 0.95678 1.02358 1.48334 1.48913 1.26279 1.08723 1.19254 0.95915 0.95029 0.77127 1.21448 1.08865 1.23314 1.02037 0.92337 1.24921 0.95713 0.97108 0.96391 1.69940 1.29484 1.43324 1.10680 0.86510 0.81657 0.80855 0.78794 1.19839 1.21078 1.20949 1.20000 0.79405 0.81174 0.89915 1.90674 1.53352 1.58192 1.39503 1.22026 1.00446 0.98831 0.97804 1.21470 0.96160 0.95474 0.82418 0.88979 1.22661 0.91416 0.99685 1.02061 1.22389 0.99875 1.02174 0.95198 1.20969 0.82522 0.76853 0.89072 1.90692 1.70593 1.45978 1.34788 1.48318 1.07740 1.63874 1.15433 1.21521 0.91750 1.01472 0.90002 0.91243 0.92280 0.92954 0.90832 0.92756 0.93276 0.90005 0.94832 0.94013 0.92842 0.89171 0.89006 0.90130 0.87793 0.88174 0.87839 0.92563 0.91070 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 37.16 0.34 -1.84 16 2 C 0.13 1.97 3.15 -67.93 -0.21 1.76 16 3 C -0.16 -2.43 8.47 37.16 0.31 -2.11 16 4 N -0.59 -11.30 2.39 -167.47 -0.40 -11.70 16 5 C 0.25 5.96 4.59 -5.19 -0.02 5.93 16 6 C -0.52 -13.66 7.83 -34.44 -0.27 -13.93 16 7 H 0.06 1.55 7.63 -52.49 -0.40 1.15 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.51 9.31 7.39 -10.99 -0.08 9.23 16 15 O -0.54 -11.88 14.50 5.55 0.08 -11.80 16 16 C -0.15 -1.94 3.34 -27.88 -0.09 -2.03 16 17 C 0.15 1.87 2.95 -67.01 -0.20 1.67 16 18 H 0.09 1.22 7.94 -51.93 -0.41 0.81 16 19 C -0.12 -1.52 5.75 -25.10 -0.14 -1.67 16 20 C -0.16 -1.78 6.86 -26.75 -0.18 -1.96 16 21 C 0.52 7.17 8.02 -10.86 -0.09 7.08 16 22 O -0.54 -9.31 17.66 5.56 0.10 -9.21 16 23 N -0.62 -7.50 3.18 -172.71 -0.55 -8.05 16 24 C 0.09 0.91 10.07 59.85 0.60 1.51 16 25 H 0.07 1.09 6.66 -51.93 -0.35 0.74 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.89 5.76 -51.93 -0.30 0.59 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 32 H 0.03 0.83 6.43 -51.93 -0.33 0.50 16 33 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.09 0.97 7.15 -51.93 -0.37 0.60 16 36 H 0.09 1.11 7.43 -51.93 -0.39 0.72 16 37 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 38 H 0.10 1.44 7.68 -51.93 -0.40 1.04 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.70 8.03 -51.93 -0.42 0.29 16 43 H 0.07 0.58 7.64 -51.93 -0.40 0.18 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -32.32 344.79 -7.00 -39.32 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.01 Total: -0.15 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.13 Total: 5.19 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.21 Total: -44.63 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.18 Total: -21.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.32 -7.00 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597040914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.461 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds