Wall clock time and date at job start Tue Mar 31 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34424 * 124.34686 * 2 1 4 4 O 1.21285 * 124.93898 * 359.34861 * 3 2 1 5 5 C 1.51278 * 110.11453 * 179.61120 * 3 2 1 6 6 C 1.54625 * 104.19798 * 343.74880 * 5 3 2 7 7 C 1.46758 * 124.35310 * 180.02562 * 2 1 3 8 8 H 1.09005 * 110.24184 * 315.99690 * 7 2 1 9 9 C 1.53001 * 110.24512 * 77.90640 * 7 2 1 10 10 C 1.50696 * 109.47051 * 185.80144 * 9 7 2 11 11 O 1.21282 * 120.00249 * 5.70989 * 10 9 7 12 12 N 1.34780 * 120.00399 * 185.71345 * 10 9 7 13 13 C 1.46494 * 120.00435 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47314 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46978 * 300.00323 * 14 13 12 16 16 C 1.53006 * 109.46856 * 60.00023 * 14 13 12 17 17 C 1.50696 * 109.47278 * 179.97438 * 14 13 12 18 18 H 1.08002 * 119.99961 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99979 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99964 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 120.00032 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47124 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47247 * 119.99764 * 21 19 17 24 24 H 1.48503 * 109.47103 * 240.00083 * 21 19 17 25 25 H 1.09000 * 109.47119 * 354.93916 * 1 2 3 26 26 H 1.09003 * 109.46423 * 114.93858 * 1 2 3 27 27 H 1.08996 * 109.46757 * 234.93671 * 1 2 3 28 28 H 1.09003 * 110.48598 * 102.43135 * 5 3 2 29 29 H 1.09000 * 110.48499 * 225.07249 * 5 3 2 30 30 H 1.08999 * 110.96747 * 266.68231 * 6 5 3 31 31 H 1.08998 * 111.00126 * 142.92743 * 6 5 3 32 32 H 1.08995 * 109.47488 * 305.80712 * 9 7 2 33 33 H 1.09003 * 109.46816 * 65.80361 * 9 7 2 34 34 H 0.97005 * 119.99597 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47277 * 300.00318 * 13 12 10 36 36 H 1.09001 * 109.47196 * 59.99704 * 13 12 10 37 37 H 1.09000 * 109.47406 * 60.00224 * 15 14 13 38 38 H 1.09003 * 109.46532 * 179.97438 * 15 14 13 39 39 H 1.08992 * 109.47122 * 299.99676 * 15 14 13 40 40 H 1.09001 * 109.46623 * 59.99978 * 16 14 13 41 41 H 1.08997 * 109.46799 * 180.02562 * 16 14 13 42 42 H 1.08997 * 109.47120 * 300.00407 * 16 14 13 43 43 H 0.97004 * 119.99710 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1099 0.0000 4 8 1.7945 2.2443 -0.0113 5 6 3.6898 0.7379 0.0096 6 6 3.7012 -0.7486 0.4349 7 6 2.2932 -1.2116 -0.0005 8 1 1.8987 -1.9384 0.7096 9 6 2.3437 -1.8178 -1.4044 10 6 3.0773 -3.1333 -1.3575 11 8 3.4256 -3.5957 -0.2918 12 7 3.3464 -3.7961 -2.4998 13 6 4.0590 -5.0752 -2.4541 14 6 4.2339 -5.6127 -3.8759 15 6 2.8596 -5.8171 -4.5165 16 6 5.0389 -4.6097 -4.7048 17 6 4.9675 -6.9281 -3.8289 18 1 5.2776 -7.3399 -2.8799 19 6 5.2429 -7.6060 -4.9975 20 7 4.8657 -7.1043 -6.1532 21 14 6.1516 -9.2370 -4.9393 22 1 6.4634 -9.5799 -3.5284 23 1 5.2997 -10.2998 -5.5307 24 1 7.4149 -9.1277 -5.7124 25 1 -0.3633 1.0237 0.0907 26 1 -0.3632 -0.4333 -0.9319 27 1 -0.3633 -0.5904 0.8411 28 1 4.1192 0.8534 -0.9856 29 1 4.2328 1.3459 0.7333 30 1 3.8274 -0.8449 1.5133 31 1 4.4755 -1.3012 -0.0973 32 1 1.3286 -1.9805 -1.7667 33 1 2.8642 -1.1353 -2.0763 34 1 3.0674 -3.4264 -3.3522 35 1 5.0379 -4.9296 -1.9973 36 1 3.4854 -5.7898 -1.8639 37 1 2.3294 -4.8653 -4.5505 38 1 2.9843 -6.1995 -5.5295 39 1 2.2862 -6.5315 -3.9260 40 1 6.0179 -4.4640 -4.2483 41 1 5.1631 -4.9924 -5.7178 42 1 4.5087 -3.6579 -4.7387 43 1 5.0597 -7.5811 -6.9754 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597760287.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:15 Heat of formation + Delta-G solvation = -82.625437 kcal Electronic energy + Delta-G solvation = -22670.759139 eV Core-core repulsion = 19329.509021 eV Total energy + Delta-G solvation = -3341.250117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84453 -39.25675 -36.92142 -36.24180 -33.36337 -32.99813 -31.31380 -30.42526 -26.82781 -26.33077 -25.78849 -25.42619 -24.39606 -21.82014 -20.08254 -19.49546 -18.84140 -17.33901 -16.62922 -16.43405 -15.84324 -15.52514 -15.22367 -14.99412 -14.61101 -14.09958 -13.81058 -13.59608 -13.15914 -13.08562 -12.92170 -12.77357 -12.48299 -12.33718 -12.23693 -12.19425 -11.43515 -11.25611 -11.11493 -11.07167 -10.91863 -10.70578 -10.44853 -10.25301 -9.99574 -9.69888 -9.67995 -9.35072 -8.94468 -8.82692 -8.52712 -8.38199 -6.07023 -4.17285 2.40062 2.74608 2.92081 3.23809 3.32762 3.36805 3.68533 4.18153 4.30911 4.36429 4.53987 4.78184 4.95165 5.05846 5.10945 5.20015 5.23740 5.26423 5.40769 5.48743 5.52962 5.65034 5.85424 5.87913 6.16137 6.25863 6.31115 6.44402 6.70452 6.75899 6.86108 6.89518 6.94912 6.95362 7.29151 7.49741 7.64644 7.95272 7.95529 7.98154 8.09088 8.32855 8.58306 8.83759 9.49040 10.94360 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003183 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.708394 B = 8793.878430 C = 8881.953880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.619 5.619 3 C 0.517 3.483 4 O -0.539 6.539 5 C -0.159 4.159 6 C -0.119 4.119 7 C 0.148 3.852 8 H 0.100 0.900 9 C -0.155 4.155 10 C 0.508 3.492 11 O -0.551 6.551 12 N -0.715 5.715 13 C 0.132 3.868 14 C 0.055 3.945 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.506 4.506 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.398 0.602 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.006 0.994 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.006 0.994 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 11.686 7.972 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.353 5.353 3 C 0.306 3.694 4 O -0.417 6.417 5 C -0.199 4.199 6 C -0.157 4.157 7 C 0.044 3.956 8 H 0.118 0.882 9 C -0.196 4.196 10 C 0.293 3.707 11 O -0.430 6.430 12 N -0.366 5.366 13 C 0.009 3.991 14 C 0.054 3.946 15 C -0.189 4.189 16 C -0.188 4.188 17 C -0.545 4.545 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.729 11.888 8.527 15.711 hybrid contribution 0.251 -0.876 -0.607 1.095 sum -5.478 11.012 7.920 14.628 Atomic orbital electron populations 1.21583 0.78152 1.03585 1.01771 1.48281 1.06519 1.07279 1.73197 1.21002 0.89599 0.84183 0.74639 1.90710 1.78927 1.21192 1.50853 1.22403 0.94334 0.98257 1.04874 1.22591 0.96194 0.93936 1.02971 1.21384 0.91549 0.86454 0.96236 0.88189 1.22031 1.02592 0.95995 0.98989 1.20266 0.80019 0.85875 0.84590 1.90686 1.53738 1.69144 1.29416 1.46350 1.57919 1.23913 1.08370 1.21727 0.94821 0.81868 1.00655 1.18365 0.93549 0.94559 0.88080 1.21830 0.96174 0.96729 1.04118 1.21831 0.97670 0.95191 1.04146 1.21021 1.36305 1.04093 0.93075 0.92373 1.24883 0.95534 0.97679 0.95430 1.69812 1.46669 1.38452 0.97481 0.86519 0.79488 0.83713 0.78193 1.19739 1.21054 1.21044 0.89987 0.92082 0.91743 0.87749 0.87987 0.89655 0.88629 0.88580 0.88832 0.76660 0.92626 0.92694 0.97538 0.89598 0.95450 0.95425 0.89597 0.97533 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.13 59.85 0.67 1.43 16 2 N -0.62 -6.40 2.97 -172.70 -0.51 -6.91 16 3 C 0.52 6.24 8.02 -10.86 -0.09 6.15 16 4 O -0.54 -8.46 17.36 5.55 0.10 -8.36 16 5 C -0.16 -1.46 6.86 -26.75 -0.18 -1.64 16 6 C -0.12 -1.14 6.18 -25.10 -0.16 -1.29 16 7 C 0.15 1.50 2.72 -67.01 -0.18 1.32 16 8 H 0.10 1.08 7.80 -51.93 -0.40 0.68 16 9 C -0.15 -1.61 5.47 -27.88 -0.15 -1.76 16 10 C 0.51 7.39 7.22 -10.99 -0.08 7.31 16 11 O -0.55 -9.72 15.12 5.56 0.08 -9.63 16 12 N -0.72 -11.34 4.96 -60.30 -0.30 -11.64 16 13 C 0.13 2.61 4.50 -4.04 -0.02 2.59 16 14 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 15 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 16 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 17 C -0.51 -12.85 8.01 -34.44 -0.28 -13.12 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 20 N -0.89 -23.03 9.35 55.43 0.52 -22.52 16 21 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.08 0.75 7.55 -51.93 -0.39 0.35 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.00 7.06 -51.93 -0.37 0.64 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.87 8.13 -51.93 -0.42 0.44 16 34 H 0.40 5.73 6.16 -40.82 -0.25 5.48 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 38 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.52 8.31 -40.82 -0.34 6.19 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -29.57 342.58 -6.96 -36.53 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.95 Total: 3.44 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.04 Total: -1.31 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -0.29 Total: -41.07 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.18 Total: -17.99 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.57 -6.96 -36.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597760287.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.094 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds