Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46638 * 2 1 4 4 H 1.08997 * 109.47081 * 306.03879 * 3 2 1 5 5 N 1.46502 * 109.47014 * 66.04077 * 3 2 1 6 6 C 1.34773 * 120.00135 * 274.99828 * 5 3 2 7 7 C 1.50700 * 120.00279 * 180.02562 * 6 5 3 8 8 O 1.21285 * 119.99627 * 359.97438 * 6 5 3 9 9 C 1.50704 * 109.46916 * 186.03504 * 3 2 1 10 10 O 1.21272 * 120.00375 * 259.70873 * 9 3 2 11 11 N 1.34779 * 119.99391 * 79.70863 * 9 3 2 12 12 C 1.46500 * 120.00522 * 4.49270 * 11 9 3 13 13 C 1.50709 * 109.47093 * 265.72459 * 12 11 9 14 14 H 1.07997 * 119.99496 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99948 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99800 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99737 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47217 * 90.00223 * 17 15 13 19 19 H 1.48506 * 109.46638 * 210.00052 * 17 15 13 20 20 H 1.48500 * 109.47294 * 330.00101 * 17 15 13 21 21 C 1.46509 * 119.99712 * 184.77185 * 11 9 3 22 22 C 1.53004 * 109.46705 * 264.91780 * 21 11 9 23 23 C 1.52997 * 117.49373 * 243.83785 * 22 21 11 24 24 C 1.52993 * 117.49745 * 175.17783 * 22 21 11 25 25 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47515 * 299.99743 * 1 2 3 27 27 H 1.09004 * 109.47280 * 60.00141 * 1 2 3 28 28 H 1.08994 * 109.47056 * 240.00221 * 2 1 3 29 29 H 1.08994 * 109.46812 * 120.00149 * 2 1 3 30 30 H 0.97001 * 119.99918 * 94.99554 * 5 3 2 31 31 H 1.09002 * 109.47026 * 0.02562 * 7 6 5 32 32 H 1.09005 * 109.47180 * 119.99664 * 7 6 5 33 33 H 1.08996 * 109.47014 * 239.99662 * 7 6 5 34 34 H 1.09005 * 109.46696 * 25.71844 * 12 11 9 35 35 H 1.08993 * 109.47237 * 145.71893 * 12 11 9 36 36 H 0.96999 * 119.99693 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47138 * 24.91374 * 21 11 9 38 38 H 1.08993 * 109.47135 * 144.91655 * 21 11 9 39 39 H 1.08996 * 115.55083 * 29.50266 * 22 21 11 40 40 H 1.08995 * 117.50490 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49841 * 145.02137 * 23 22 21 42 42 H 1.09003 * 117.50127 * 214.97096 * 24 22 21 43 43 H 1.09004 * 117.49876 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5910 1.9866 -0.8310 5 7 1.6738 2.0899 1.2622 6 6 0.4587 2.6559 1.4017 7 6 0.0823 3.3223 2.6998 8 8 -0.3315 2.6298 0.4819 9 6 3.5395 1.4453 -0.1494 10 8 4.2457 1.5977 0.8247 11 7 4.0958 1.2783 -1.3656 12 6 3.2447 1.1928 -2.5550 13 6 2.9605 -0.2541 -2.8664 14 1 3.3730 -1.0320 -2.2411 15 6 2.1739 -0.5845 -3.9495 16 7 1.9263 -1.8471 -4.2215 17 14 1.4600 0.7614 -5.0305 18 1 2.4099 1.0696 -6.1295 19 1 0.1700 0.3022 -5.6054 20 1 1.2324 1.9820 -4.2159 21 6 5.5513 1.1761 -1.4976 22 6 6.1314 2.5532 -1.8265 23 6 6.8254 2.7225 -3.1795 24 6 7.6546 2.6805 -1.8934 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.3060 2.1111 1.9976 31 1 0.9134 3.2474 3.4011 32 1 -0.1445 4.3727 2.5167 33 1 -0.7941 2.8294 3.1205 34 1 2.3064 1.7154 -2.3686 35 1 3.7552 1.6531 -3.4009 36 1 1.3726 -2.0795 -4.9833 37 1 5.9768 0.8170 -0.5605 38 1 5.7954 0.4783 -2.2985 39 1 5.5719 3.4041 -1.4379 40 1 6.8692 1.8529 -3.8351 41 1 6.7229 3.6849 -3.6808 42 1 8.0972 3.6153 -1.5493 43 1 8.2434 1.7830 -1.7035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601037283.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -70.776470 kcal Electronic energy + Delta-G solvation = -23618.812489 eV Core-core repulsion = 20278.076182 eV Total energy + Delta-G solvation = -3340.736308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64594 -40.24769 -38.36069 -36.66426 -36.21030 -34.46926 -33.53061 -30.63886 -30.33369 -28.97071 -26.75127 -24.46313 -23.20448 -23.06572 -21.91604 -21.37508 -20.24973 -19.02505 -18.46950 -18.01283 -17.08744 -16.90301 -16.75296 -16.30091 -15.90769 -15.58055 -15.08679 -14.91595 -14.75947 -14.30198 -14.28391 -13.83451 -13.57524 -13.53556 -13.26684 -13.13707 -12.88981 -12.83081 -12.59380 -12.48572 -12.43016 -12.33647 -12.02831 -11.86370 -11.62571 -11.37648 -10.94088 -10.86195 -10.77151 -10.69024 -10.07028 -9.54418 -8.29852 -6.33579 1.35135 1.40411 1.46433 1.48737 1.67760 1.88717 2.32489 2.48624 2.94265 3.04169 3.44436 3.83956 3.90258 3.99205 4.02024 4.08582 4.10484 4.35310 4.44185 4.52536 4.57166 4.64205 4.69676 4.74798 4.76384 4.80834 4.85008 4.90547 5.02743 5.04801 5.06886 5.22521 5.23719 5.28153 5.40275 5.42192 5.50380 5.63105 6.14027 6.49539 6.59121 6.68615 7.07674 7.28628 7.30316 8.85013 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.008031 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.637936 B = 3485.441509 C = 5237.441628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C 0.138 3.862 4 H 0.092 0.908 5 N -0.707 5.707 6 C 0.501 3.499 7 C -0.158 4.158 8 O -0.585 6.585 9 C 0.515 3.485 10 O -0.575 6.575 11 N -0.583 5.583 12 C 0.214 3.786 13 C -0.527 4.527 14 H 0.046 0.954 15 C 0.033 3.967 16 N -0.931 5.931 17 Si 0.921 3.079 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.251 1.251 21 C 0.149 3.851 22 C -0.180 4.180 23 C -0.176 4.176 24 C -0.157 4.157 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.415 0.585 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.268 0.732 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 10.722 9.313 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.029 3.971 4 H 0.109 0.891 5 N -0.362 5.362 6 C 0.291 3.709 7 C -0.217 4.217 8 O -0.465 6.465 9 C 0.303 3.697 10 O -0.456 6.456 11 N -0.311 5.311 12 C 0.092 3.908 13 C -0.565 4.565 14 H 0.064 0.936 15 C -0.167 4.167 16 N -0.571 5.571 17 Si 0.745 3.255 18 H -0.185 1.185 19 H -0.212 1.212 20 H -0.174 1.174 21 C 0.026 3.974 22 C -0.199 4.199 23 C -0.213 4.213 24 C -0.194 4.194 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.253 0.747 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.282 10.668 9.023 14.353 hybrid contribution -0.247 -0.111 -0.683 0.735 sum 3.035 10.557 8.340 13.792 Atomic orbital electron populations 1.21575 0.94323 1.00561 1.01464 1.21965 0.97382 0.93967 1.03870 1.20648 0.91173 0.96167 0.89117 0.89057 1.46014 1.17328 1.57258 1.15584 1.21714 0.80392 0.77344 0.91472 1.21858 1.05001 1.02496 0.92356 1.90735 1.51087 1.60599 1.44111 1.20591 0.90428 0.75803 0.82922 1.90565 1.64091 1.52569 1.38410 1.47840 1.07499 1.68923 1.06875 1.19714 0.90571 0.96333 0.84208 1.21306 1.31463 0.91535 1.12219 0.93588 1.25513 0.95940 0.96973 0.98313 1.70001 1.39089 1.18498 1.29476 0.86105 0.78554 0.80657 0.80193 1.18531 1.21234 1.17446 1.20997 0.78743 0.95583 1.02050 1.22558 0.96365 0.97952 1.03026 1.23132 1.03910 1.03682 0.90607 1.23015 0.91563 1.04143 1.00697 0.92980 0.92436 0.94319 0.89250 0.91787 0.74708 0.88097 0.87592 0.87490 0.94538 0.93768 0.92324 0.90585 0.90477 0.89080 0.88750 0.87917 0.87326 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.54 71.98 0.61 -3.98 16 2 C -0.13 -5.21 5.53 30.60 0.17 -5.04 16 3 C 0.14 5.13 1.93 44.25 0.09 5.22 16 4 H 0.09 3.79 5.63 -2.39 -0.01 3.77 16 5 N -0.71 -21.24 5.00 -446.09 -2.23 -23.47 16 6 C 0.50 14.33 6.56 87.66 0.57 14.90 16 7 C -0.16 -2.59 10.39 71.24 0.74 -1.85 16 8 O -0.59 -21.88 14.24 -3.04 -0.04 -21.92 16 9 C 0.51 20.13 6.91 87.66 0.61 20.73 16 10 O -0.57 -22.96 15.47 -3.00 -0.05 -23.01 16 11 N -0.58 -23.04 2.46 -826.13 -2.03 -25.06 16 12 C 0.21 9.25 3.99 85.64 0.34 9.59 16 13 C -0.53 -27.02 7.58 25.60 0.19 -26.82 16 14 H 0.05 2.66 7.71 -2.91 -0.02 2.64 16 15 C 0.03 1.75 5.47 84.65 0.46 2.21 16 16 N -0.93 -54.03 13.96 21.45 0.30 -53.73 16 17 Si 0.92 41.01 27.47 68.60 1.88 42.89 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 21 C 0.15 5.17 5.73 86.38 0.50 5.66 16 22 C -0.18 -5.23 6.01 -10.80 -0.06 -5.30 16 23 C -0.18 -4.35 10.18 30.62 0.31 -4.04 16 24 C -0.16 -3.52 10.25 30.62 0.31 -3.21 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 2.00 5.62 -2.39 -0.01 1.99 16 27 H 0.04 1.60 7.91 -2.39 -0.02 1.58 16 28 H 0.09 4.14 4.95 -2.39 -0.01 4.13 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.41 10.89 7.57 -92.71 -0.70 10.19 16 31 H 0.10 1.14 7.91 -2.39 -0.02 1.13 16 32 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.62 4.89 -2.38 -0.01 1.60 16 35 H 0.04 1.84 7.53 -2.39 -0.02 1.82 16 36 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.08 2.67 7.34 -2.39 -0.02 2.66 16 38 H 0.08 2.74 7.84 -2.39 -0.02 2.73 16 39 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -64.77 344.81 2.93 -61.84 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.25 Total: 34.38 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.84 Total: 8.08 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.96 Total: -102.27 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.09 Total: -44.93 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 1.88 Total: 42.89 kcal Total: -64.77 2.93 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037283.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.937 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds