Wall clock time and date at job start Tue Mar 31 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53007 * 109.47224 * 2 1 4 4 H 1.08990 * 109.47394 * 305.71044 * 3 2 1 5 5 N 1.46504 * 109.47022 * 65.70929 * 3 2 1 6 6 C 1.34774 * 120.00054 * 275.00102 * 5 3 2 7 7 C 1.50706 * 120.00043 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00083 * 0.02562 * 6 5 3 9 9 C 1.50702 * 109.47121 * 185.70624 * 3 2 1 10 10 O 1.21291 * 120.00182 * 258.77639 * 9 3 2 11 11 N 1.34779 * 119.99696 * 78.78179 * 9 3 2 12 12 C 1.37097 * 120.00082 * 4.45376 * 11 9 3 13 13 H 1.07998 * 119.99996 * 233.55449 * 12 11 9 14 14 C 1.38953 * 119.99602 * 53.55587 * 12 11 9 15 15 N 1.31419 * 119.99556 * 198.14229 * 14 12 11 16 16 Si 1.86794 * 120.00381 * 18.13913 * 14 12 11 17 17 H 1.48500 * 109.47179 * 93.85893 * 16 14 12 18 18 H 1.48496 * 109.47244 * 213.86284 * 16 14 12 19 19 H 1.48504 * 109.47027 * 333.86385 * 16 14 12 20 20 C 1.46497 * 119.99646 * 184.45890 * 11 9 3 21 21 C 1.54967 * 110.92215 * 121.46372 * 20 11 9 22 22 C 1.54269 * 104.15843 * 156.29095 * 21 20 11 23 23 C 1.53868 * 106.64121 * 336.44696 * 22 21 20 24 24 C 1.54261 * 106.59868 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47258 * 300.00003 * 1 2 3 27 27 H 1.09001 * 109.47416 * 59.99499 * 1 2 3 28 28 H 1.08998 * 109.47461 * 240.00251 * 2 1 3 29 29 H 1.09002 * 109.47455 * 119.99946 * 2 1 3 30 30 H 0.97009 * 119.99886 * 94.99797 * 5 3 2 31 31 H 1.08993 * 109.46653 * 60.00214 * 7 6 5 32 32 H 1.08999 * 109.46706 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.46979 * 300.00021 * 7 6 5 34 34 H 0.97003 * 119.99456 * 180.02562 * 15 14 12 35 35 H 1.08996 * 110.67494 * 358.15634 * 20 11 9 36 36 H 1.09001 * 110.47582 * 37.64491 * 21 20 11 37 37 H 1.08999 * 110.53264 * 274.97070 * 21 20 11 38 38 H 1.08997 * 110.03083 * 217.13446 * 22 21 20 39 39 H 1.09007 * 110.03232 * 95.75657 * 22 21 20 40 40 H 1.09005 * 110.03274 * 119.26258 * 23 22 21 41 41 H 1.09000 * 110.03211 * 240.63760 * 23 22 21 42 42 H 1.08998 * 110.48625 * 142.28960 * 24 23 22 43 43 H 1.09006 * 110.48665 * 264.79563 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5956 1.9851 -0.8344 5 7 1.6670 2.0924 1.2590 6 6 0.4512 2.6587 1.3907 7 6 0.0674 3.3267 2.6860 8 8 -0.3344 2.6301 0.4671 9 6 3.5403 1.4449 -0.1413 10 8 4.2411 1.6160 0.8338 11 7 4.1035 1.2569 -1.3512 12 6 3.3132 1.1549 -2.4668 13 1 3.4144 0.3041 -3.1243 14 6 2.3820 2.1462 -2.7515 15 7 1.3964 1.9017 -3.5857 16 14 2.5311 3.8261 -1.9486 17 1 3.2853 4.7383 -2.8454 18 1 1.1752 4.3805 -1.7052 19 1 3.2515 3.6950 -0.6566 20 6 5.5602 1.1615 -1.4742 21 6 5.9747 -0.1904 -2.1084 22 6 7.3635 0.0893 -2.7190 23 6 7.4395 1.6063 -2.9646 24 6 6.0938 2.1966 -2.4954 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2952 2.1149 1.9978 31 1 0.7612 4.1410 2.8942 32 1 -0.9447 3.7230 2.6043 33 1 0.1079 2.5986 3.4961 34 1 0.7466 2.5939 -3.7848 35 1 6.0379 1.2948 -0.5036 36 1 5.2675 -0.4796 -2.8857 37 1 6.0425 -0.9657 -1.3453 38 1 7.4719 -0.4475 -3.6614 39 1 8.1455 -0.2161 -2.0236 40 1 8.2578 2.0374 -2.3878 41 1 7.5858 1.8058 -4.0262 42 1 6.2479 3.1625 -2.0143 43 1 5.4068 2.2955 -3.3359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:47 Heat of formation + Delta-G solvation = -77.288866 kcal Electronic energy + Delta-G solvation = -24439.902715 eV Core-core repulsion = 21098.884009 eV Total energy + Delta-G solvation = -3341.018706 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99438 -38.76562 -37.02874 -34.66253 -34.26897 -31.97072 -31.88039 -29.36168 -28.14838 -27.80363 -25.82058 -24.63148 -21.56904 -20.41920 -19.92507 -19.71735 -19.26568 -17.46471 -16.33789 -16.17472 -15.65528 -15.24084 -15.01223 -14.76061 -14.07475 -13.68328 -13.59376 -13.46363 -13.05062 -12.86474 -12.64909 -12.36245 -12.16502 -12.12084 -11.75065 -11.54233 -11.13684 -11.03953 -10.93937 -10.81536 -10.67591 -10.65089 -10.52261 -10.15015 -10.02703 -9.93145 -9.80260 -9.39373 -9.16536 -8.67320 -8.39757 -7.58905 -6.52286 -4.29361 3.05630 3.09324 3.25749 3.27525 3.52237 3.69036 4.09370 4.42051 4.81491 5.16170 5.18812 5.21785 5.34505 5.44357 5.51520 5.68710 5.76683 5.84628 5.95938 5.98662 6.00037 6.08339 6.13002 6.17589 6.26900 6.35350 6.36753 6.41487 6.50072 6.52450 6.65205 6.77454 6.80615 6.85601 7.01302 7.07190 7.11174 7.65523 7.69500 8.03406 8.42013 8.69380 8.89607 9.18203 9.60977 10.55403 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007054 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.267045 B = 3968.503006 C = 4216.075877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.128 3.872 4 H 0.122 0.878 5 N -0.714 5.714 6 C 0.500 3.500 7 C -0.172 4.172 8 O -0.538 6.538 9 C 0.493 3.507 10 O -0.598 6.598 11 N -0.456 5.456 12 C -0.353 4.353 13 H 0.103 0.897 14 C 0.081 3.919 15 N -0.844 5.844 16 Si 0.844 3.156 17 H -0.277 1.277 18 H -0.272 1.272 19 H -0.255 1.255 20 C 0.130 3.870 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.131 4.131 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.403 0.597 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.279 0.721 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -0.804 6.344 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.139 0.861 5 N -0.368 5.368 6 C 0.287 3.713 7 C -0.232 4.232 8 O -0.416 6.416 9 C 0.282 3.718 10 O -0.483 6.483 11 N -0.176 5.176 12 C -0.480 4.480 13 H 0.121 0.879 14 C -0.128 4.128 15 N -0.477 5.477 16 Si 0.669 3.331 17 H -0.203 1.203 18 H -0.197 1.197 19 H -0.180 1.180 20 C 0.026 3.974 21 C -0.166 4.166 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.169 4.169 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.239 0.761 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.295 -0.689 6.011 6.890 hybrid contribution 0.331 1.083 0.507 1.240 sum 3.626 0.394 6.518 7.469 Atomic orbital electron populations 1.21747 0.95052 0.99869 1.02759 1.21608 0.96569 0.94492 1.02427 1.21009 0.93287 0.95945 0.87668 0.86083 1.45976 1.16447 1.57454 1.16916 1.20698 0.81781 0.78635 0.90205 1.21900 1.03954 1.01712 0.95606 1.90753 1.50400 1.58749 1.41665 1.20455 0.89623 0.78373 0.83306 1.90494 1.64116 1.54968 1.38673 1.43533 1.04084 1.64502 1.05469 1.18804 1.16680 1.08282 1.04273 0.87949 1.25539 0.94885 0.97491 0.94895 1.69666 1.10969 1.34228 1.32810 0.87314 0.78997 0.85617 0.81186 1.20287 1.19674 1.17954 1.22040 0.82988 0.94148 0.98205 1.22601 0.96230 0.97397 1.00340 1.22038 0.97362 0.96128 1.00168 1.22035 0.97558 0.95565 1.00559 1.22613 0.96261 0.97708 1.00326 0.94063 0.93366 0.91574 0.89243 0.92970 0.76073 0.89785 0.89232 0.89646 0.91074 0.89582 0.90158 0.92518 0.92227 0.92549 0.92599 0.92204 0.92886 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.53 37.15 0.32 -2.37 16 2 C -0.11 -2.29 5.52 -26.73 -0.15 -2.44 16 3 C 0.13 2.86 1.08 -69.08 -0.07 2.79 16 4 H 0.12 3.05 2.71 -51.93 -0.14 2.91 16 5 N -0.71 -13.89 5.00 -54.93 -0.27 -14.17 16 6 C 0.50 9.28 6.54 -10.98 -0.07 9.21 16 7 C -0.17 -2.16 10.32 36.01 0.37 -1.78 16 8 O -0.54 -12.10 14.23 5.56 0.08 -12.02 16 9 C 0.49 11.62 4.46 -10.98 -0.05 11.57 16 10 O -0.60 -14.52 15.29 5.55 0.08 -14.44 16 11 N -0.46 -10.52 1.99 -105.58 -0.21 -10.73 16 12 C -0.35 -8.73 6.72 -14.93 -0.10 -8.83 16 13 H 0.10 2.66 7.04 -52.49 -0.37 2.29 16 14 C 0.08 2.12 4.00 -17.46 -0.07 2.05 16 15 N -0.84 -22.91 13.96 55.50 0.77 -22.14 16 16 Si 0.84 21.13 25.17 -169.99 -4.28 16.85 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.51 5.53 56.52 0.31 -6.20 16 20 C 0.13 2.63 3.29 -65.90 -0.22 2.41 16 21 C -0.13 -2.22 6.39 -25.03 -0.16 -2.38 16 22 C -0.12 -1.72 6.80 -25.62 -0.17 -1.89 16 23 C -0.12 -1.78 6.80 -25.62 -0.17 -1.95 16 24 C -0.13 -2.45 6.35 -25.08 -0.16 -2.61 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.92 5.63 -51.93 -0.29 0.63 16 27 H 0.07 1.47 7.89 -51.93 -0.41 1.06 16 28 H 0.09 1.94 7.38 -51.93 -0.38 1.55 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.40 7.11 7.73 -40.82 -0.32 6.80 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.06 8.12 -51.93 -0.42 0.64 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 36 H 0.08 1.50 6.66 -51.93 -0.35 1.16 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.09 1.79 7.14 -51.93 -0.37 1.42 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -29.63 329.19 -6.44 -36.06 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.86 Total: 11.84 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.71 Total: 3.78 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.29 Total: -47.04 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: 0.16 Total: -26.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.28 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.63 -6.44 -36.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.226 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds