Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47056 * 2 1 4 4 H 1.09001 * 109.47456 * 305.54880 * 3 2 1 5 5 N 1.46499 * 109.47313 * 65.54815 * 3 2 1 6 6 C 1.34782 * 120.00130 * 275.00032 * 5 3 2 7 7 C 1.50691 * 120.00266 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99406 * 0.02562 * 6 5 3 9 9 C 1.50698 * 109.47049 * 185.55019 * 3 2 1 10 10 O 1.21288 * 119.99501 * 262.45013 * 9 3 2 11 11 N 1.34770 * 120.00223 * 82.45366 * 9 3 2 12 12 C 1.46930 * 120.63030 * 174.99923 * 11 9 3 13 13 C 1.53192 * 108.77302 * 233.62564 * 12 11 9 14 14 C 1.53034 * 109.31562 * 305.36460 * 13 12 11 15 15 C 1.53042 * 109.53759 * 61.36729 * 14 13 12 16 16 H 1.08993 * 109.52591 * 58.60247 * 15 14 13 17 17 C 1.50695 * 109.49606 * 178.68465 * 15 14 13 18 18 H 1.08004 * 120.00278 * 119.84289 * 17 15 14 19 19 C 1.37884 * 120.00174 * 300.10750 * 17 15 14 20 20 N 1.31510 * 119.99589 * 359.73178 * 19 17 15 21 21 Si 1.86792 * 120.00103 * 179.72786 * 19 17 15 22 22 H 1.48500 * 109.47522 * 90.00202 * 21 19 17 23 23 H 1.48501 * 109.47349 * 210.00321 * 21 19 17 24 24 H 1.48500 * 109.47398 * 330.00199 * 21 19 17 25 25 C 1.46925 * 120.63071 * 355.01725 * 11 9 3 26 26 H 1.09004 * 109.46941 * 299.99692 * 1 2 3 27 27 H 1.08991 * 109.47455 * 60.00169 * 1 2 3 28 28 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46622 * 239.99864 * 2 1 3 30 30 H 1.08995 * 109.47076 * 120.00163 * 2 1 3 31 31 H 0.96998 * 120.00145 * 94.99828 * 5 3 2 32 32 H 1.09007 * 109.47282 * 60.00160 * 7 6 5 33 33 H 1.09001 * 109.47508 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47191 * 300.00265 * 7 6 5 35 35 H 1.08999 * 109.58519 * 353.41337 * 12 11 9 36 36 H 1.09003 * 109.58745 * 113.84017 * 12 11 9 37 37 H 1.08996 * 109.49648 * 65.31987 * 13 12 11 38 38 H 1.09003 * 109.49703 * 185.40943 * 13 12 11 39 39 H 1.08997 * 109.46043 * 301.34770 * 14 13 12 40 40 H 1.09003 * 109.45797 * 181.38632 * 14 13 12 41 41 H 0.97002 * 119.99757 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58840 * 6.58722 * 25 11 9 43 43 H 1.08996 * 109.70235 * 246.22772 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5978 1.9842 -0.8361 5 7 1.6638 2.0935 1.2573 6 6 0.4475 2.6600 1.3853 7 6 0.0603 3.3291 2.6787 8 8 -0.3356 2.6304 0.4596 9 6 3.5407 1.4447 -0.1374 10 8 4.2397 1.5499 0.8482 11 7 4.1061 1.3298 -1.3554 12 6 5.5622 1.4397 -1.5182 13 6 5.8607 2.5057 -2.5771 14 6 5.1083 2.1643 -3.8652 15 6 3.6022 2.1625 -3.5931 16 1 3.2982 3.1405 -3.2202 17 6 2.8609 1.8580 -4.8692 18 1 2.2222 0.9890 -4.9286 19 6 3.0022 2.6857 -5.9629 20 7 3.7798 3.7438 -5.8906 21 14 2.0892 2.3040 -7.5472 22 1 0.7621 2.9701 -7.5267 23 1 2.8754 2.8027 -8.7041 24 1 1.9041 0.8358 -7.6705 25 6 3.2780 1.0925 -2.5457 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2899 2.1168 1.9977 32 1 0.7536 4.1438 2.8882 33 1 -0.9513 3.7262 2.5938 34 1 0.0987 2.6019 3.4897 35 1 6.0150 1.7296 -0.5701 36 1 5.9673 0.4806 -1.8409 37 1 5.5360 3.4806 -2.2136 38 1 6.9320 2.5299 -2.7771 39 1 5.4153 1.1787 -4.2148 40 1 5.3385 2.9080 -4.6282 41 1 3.8789 4.3263 -6.6599 42 1 2.2239 1.1533 -2.2755 43 1 3.4945 0.1050 -2.9530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601665656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -88.286597 kcal Electronic energy + Delta-G solvation = -23583.624461 eV Core-core repulsion = 20242.128857 eV Total energy + Delta-G solvation = -3341.495604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47639 -39.12128 -36.95531 -35.24143 -33.44385 -32.64949 -31.54999 -30.19010 -29.71764 -27.06572 -25.09880 -24.37799 -22.01844 -21.63688 -20.49215 -19.93260 -18.58303 -17.38740 -16.60575 -16.35377 -15.77385 -15.71938 -15.08521 -14.69867 -14.44698 -13.96949 -13.64295 -13.43509 -13.28685 -12.92277 -12.84397 -12.62083 -12.44346 -12.23865 -12.06105 -11.83579 -11.75988 -11.41996 -11.03057 -10.94721 -10.79554 -10.77366 -10.36460 -10.00773 -9.86620 -9.80566 -9.75399 -9.30945 -8.95983 -8.90905 -8.45028 -8.03140 -6.07411 -4.15673 2.63146 2.79708 3.08183 3.27175 3.34319 3.36437 3.59858 4.36947 4.65543 4.82611 5.02833 5.14176 5.18209 5.22624 5.28689 5.43094 5.60250 5.62015 5.68793 5.74825 5.79939 5.89979 5.96858 6.03476 6.15213 6.19134 6.24122 6.38366 6.47651 6.51746 6.52424 6.69556 6.86971 7.09258 7.26396 7.56261 7.62513 7.78932 7.84121 8.00710 8.26047 8.28889 8.41713 8.87535 9.50140 10.97999 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.005430 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.387923 B = 5155.141907 C = 6055.277296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.125 3.875 4 H 0.117 0.883 5 N -0.713 5.713 6 C 0.509 3.491 7 C -0.172 4.172 8 O -0.537 6.537 9 C 0.512 3.488 10 O -0.562 6.562 11 N -0.594 5.594 12 C 0.115 3.885 13 C -0.134 4.134 14 C -0.113 4.113 15 C 0.039 3.961 16 H 0.030 0.970 17 C -0.518 4.518 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.104 3.896 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.036 0.964 40 H 0.096 0.904 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -4.285 13.436 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.016 3.984 4 H 0.135 0.865 5 N -0.368 5.368 6 C 0.296 3.704 7 C -0.232 4.232 8 O -0.414 6.414 9 C 0.298 3.702 10 O -0.442 6.442 11 N -0.325 5.325 12 C -0.007 4.007 13 C -0.172 4.172 14 C -0.151 4.151 15 C 0.020 3.980 16 H 0.048 0.952 17 C -0.556 4.556 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.017 4.017 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.244 0.756 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.054 -4.100 13.149 13.925 hybrid contribution -0.046 -0.101 -0.679 0.688 sum -2.100 -4.201 12.470 13.325 Atomic orbital electron populations 1.21794 0.94031 1.00772 1.03324 1.21865 0.97632 0.94081 1.02990 1.20936 0.92183 0.95885 0.89348 0.86517 1.45838 1.16981 1.57804 1.16163 1.20746 0.81285 0.78076 0.90305 1.21899 1.04309 1.01791 0.95186 1.90762 1.50540 1.58580 1.41522 1.20457 0.89910 0.76459 0.83330 1.90607 1.64128 1.52147 1.37335 1.48260 1.08298 1.68811 1.07122 1.21623 0.79698 0.99398 1.00027 1.22004 0.99839 0.98002 0.97398 1.21635 0.96634 1.01278 0.95528 1.18981 0.93070 0.93529 0.92399 0.95154 1.21037 1.27379 1.10726 0.96504 0.92368 1.24931 0.95110 0.94849 0.98783 1.69871 1.37613 1.14362 1.30671 0.86582 0.79807 0.78650 0.82910 1.20601 1.21245 1.19839 1.22305 0.93588 1.00993 0.84811 0.92563 0.91570 0.93280 0.90294 0.91488 0.75609 0.89415 0.88946 0.89540 0.90250 0.92032 0.92470 0.92368 0.94478 0.88569 0.92878 0.90717 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.53 37.16 0.32 -1.59 16 2 C -0.13 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C 0.12 1.93 1.79 -69.09 -0.12 1.80 16 4 H 0.12 2.07 6.08 -51.93 -0.32 1.75 16 5 N -0.71 -9.57 5.01 -54.94 -0.27 -9.85 16 6 C 0.51 6.78 6.53 -10.99 -0.07 6.71 16 7 C -0.17 -1.48 10.32 36.00 0.37 -1.10 16 8 O -0.54 -9.22 14.22 5.55 0.08 -9.14 16 9 C 0.51 8.86 6.92 -10.99 -0.08 8.79 16 10 O -0.56 -10.49 15.40 5.55 0.09 -10.40 16 11 N -0.59 -10.65 2.97 -172.77 -0.51 -11.16 16 12 C 0.11 1.96 6.42 -3.71 -0.02 1.94 16 13 C -0.13 -2.48 6.08 -26.61 -0.16 -2.64 16 14 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 15 C 0.04 0.91 2.25 -91.65 -0.21 0.71 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.32 8.57 -34.44 -0.30 -13.61 16 18 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.38 11.31 55.43 0.63 -23.76 16 21 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.10 1.99 4.88 -3.71 -0.02 1.98 16 26 H 0.06 0.77 5.63 -51.93 -0.29 0.48 16 27 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.41 4.92 7.76 -40.82 -0.32 4.60 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.78 8.12 -51.93 -0.42 0.35 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.34 7.04 -51.93 -0.37 0.97 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.07 1.37 5.06 -51.93 -0.26 1.11 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -29.72 335.82 -7.45 -37.17 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.84 Total: 6.40 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.66 Total: 0.13 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.16 Total: -44.76 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.16 Total: -19.54 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.72 -7.45 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601665656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.121 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds