Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47056 * 2 1 4 4 H 1.09001 * 109.47456 * 305.54880 * 3 2 1 5 5 N 1.46499 * 109.47313 * 65.54815 * 3 2 1 6 6 C 1.34782 * 120.00130 * 275.00032 * 5 3 2 7 7 C 1.50691 * 120.00266 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99406 * 0.02562 * 6 5 3 9 9 C 1.50698 * 109.47049 * 185.55019 * 3 2 1 10 10 O 1.21288 * 119.99501 * 262.45013 * 9 3 2 11 11 N 1.34770 * 120.00223 * 82.45366 * 9 3 2 12 12 C 1.46930 * 120.63030 * 174.99923 * 11 9 3 13 13 C 1.53192 * 108.77302 * 233.62564 * 12 11 9 14 14 C 1.53034 * 109.31562 * 305.36460 * 13 12 11 15 15 C 1.53042 * 109.53759 * 61.36729 * 14 13 12 16 16 H 1.08993 * 109.52591 * 58.60247 * 15 14 13 17 17 C 1.50695 * 109.49606 * 178.68465 * 15 14 13 18 18 H 1.08004 * 120.00278 * 119.84289 * 17 15 14 19 19 C 1.37884 * 120.00174 * 300.10750 * 17 15 14 20 20 N 1.31510 * 119.99589 * 359.73178 * 19 17 15 21 21 Si 1.86792 * 120.00103 * 179.72786 * 19 17 15 22 22 H 1.48500 * 109.47522 * 90.00202 * 21 19 17 23 23 H 1.48501 * 109.47349 * 210.00321 * 21 19 17 24 24 H 1.48500 * 109.47398 * 330.00199 * 21 19 17 25 25 C 1.46925 * 120.63071 * 355.01725 * 11 9 3 26 26 H 1.09004 * 109.46941 * 299.99692 * 1 2 3 27 27 H 1.08991 * 109.47455 * 60.00169 * 1 2 3 28 28 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46622 * 239.99864 * 2 1 3 30 30 H 1.08995 * 109.47076 * 120.00163 * 2 1 3 31 31 H 0.96998 * 120.00145 * 94.99828 * 5 3 2 32 32 H 1.09007 * 109.47282 * 60.00160 * 7 6 5 33 33 H 1.09001 * 109.47508 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47191 * 300.00265 * 7 6 5 35 35 H 1.08999 * 109.58519 * 353.41337 * 12 11 9 36 36 H 1.09003 * 109.58745 * 113.84017 * 12 11 9 37 37 H 1.08996 * 109.49648 * 65.31987 * 13 12 11 38 38 H 1.09003 * 109.49703 * 185.40943 * 13 12 11 39 39 H 1.08997 * 109.46043 * 301.34770 * 14 13 12 40 40 H 1.09003 * 109.45797 * 181.38632 * 14 13 12 41 41 H 0.97002 * 119.99757 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.58840 * 6.58722 * 25 11 9 43 43 H 1.08996 * 109.70235 * 246.22772 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5978 1.9842 -0.8361 5 7 1.6638 2.0935 1.2573 6 6 0.4475 2.6600 1.3853 7 6 0.0603 3.3291 2.6787 8 8 -0.3356 2.6304 0.4596 9 6 3.5407 1.4447 -0.1374 10 8 4.2397 1.5499 0.8482 11 7 4.1061 1.3298 -1.3554 12 6 5.5622 1.4397 -1.5182 13 6 5.8607 2.5057 -2.5771 14 6 5.1083 2.1643 -3.8652 15 6 3.6022 2.1625 -3.5931 16 1 3.2982 3.1405 -3.2202 17 6 2.8609 1.8580 -4.8692 18 1 2.2222 0.9890 -4.9286 19 6 3.0022 2.6857 -5.9629 20 7 3.7798 3.7438 -5.8906 21 14 2.0892 2.3040 -7.5472 22 1 0.7621 2.9701 -7.5267 23 1 2.8754 2.8027 -8.7041 24 1 1.9041 0.8358 -7.6705 25 6 3.2780 1.0925 -2.5457 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2899 2.1168 1.9977 32 1 0.7536 4.1438 2.8882 33 1 -0.9513 3.7262 2.5938 34 1 0.0987 2.6019 3.4897 35 1 6.0150 1.7296 -0.5701 36 1 5.9673 0.4806 -1.8409 37 1 5.5360 3.4806 -2.2136 38 1 6.9320 2.5299 -2.7771 39 1 5.4153 1.1787 -4.2148 40 1 5.3385 2.9080 -4.6282 41 1 3.8789 4.3263 -6.6599 42 1 2.2239 1.1533 -2.2755 43 1 3.4945 0.1050 -2.9530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601665656.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -107.383042 kcal Electronic energy + Delta-G solvation = -23584.452545 eV Core-core repulsion = 20242.128857 eV Total energy + Delta-G solvation = -3342.323688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.78048 -40.37990 -38.51217 -36.46229 -35.24980 -33.87034 -33.04604 -31.93913 -30.60184 -28.28494 -26.98628 -25.85734 -23.44059 -23.00215 -21.80803 -21.31109 -20.06182 -18.78168 -18.17051 -17.82174 -17.12034 -16.90566 -16.62078 -16.21366 -15.89689 -15.18301 -15.05165 -14.90796 -14.64953 -14.39353 -14.36196 -13.83884 -13.66731 -13.43829 -13.31289 -13.02783 -12.90762 -12.85948 -12.72594 -12.56063 -12.49770 -12.00440 -11.93400 -11.81973 -11.60906 -11.38515 -10.93192 -10.87781 -10.71756 -10.43127 -10.13424 -9.57292 -8.09065 -6.23847 1.35612 1.43193 1.45263 1.53874 1.66189 1.83084 2.37011 2.46541 3.18989 3.29869 3.84206 3.89585 3.99843 4.10122 4.19883 4.25481 4.34255 4.47718 4.51008 4.53331 4.57426 4.67415 4.75774 4.79409 4.84763 4.93409 4.98139 5.03681 5.07913 5.11492 5.22284 5.34328 5.38567 5.41945 5.57978 5.63118 5.91833 6.08497 6.30348 6.38827 6.53771 6.86700 6.98479 7.24918 7.45075 8.94947 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.005430 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.387923 B = 5155.141907 C = 6055.277296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.128 3.872 4 H 0.089 0.911 5 N -0.709 5.709 6 C 0.503 3.497 7 C -0.163 4.163 8 O -0.582 6.582 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.599 5.599 12 C 0.117 3.883 13 C -0.125 4.125 14 C -0.106 4.106 15 C 0.037 3.963 16 H -0.012 1.012 17 C -0.531 4.531 18 H 0.062 0.938 19 C 0.016 3.984 20 N -0.916 5.916 21 Si 0.952 3.048 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.120 3.880 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.416 0.584 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -5.738 14.828 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.019 3.981 4 H 0.107 0.893 5 N -0.364 5.364 6 C 0.292 3.708 7 C -0.222 4.222 8 O -0.462 6.462 9 C 0.301 3.699 10 O -0.453 6.453 11 N -0.329 5.329 12 C -0.005 4.005 13 C -0.163 4.163 14 C -0.144 4.144 15 C 0.018 3.982 16 H 0.007 0.993 17 C -0.570 4.570 18 H 0.080 0.920 19 C -0.183 4.183 20 N -0.555 5.555 21 Si 0.778 3.222 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.002 4.002 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.998 -5.560 14.574 15.726 hybrid contribution -0.050 0.399 -1.085 1.157 sum -2.048 -5.161 13.489 14.588 Atomic orbital electron populations 1.21706 0.93886 1.01623 1.01967 1.21842 0.97589 0.92721 1.03776 1.20807 0.90694 0.97015 0.89617 0.89272 1.45862 1.17378 1.57606 1.15543 1.21659 0.80475 0.77268 0.91381 1.21923 1.04680 1.02549 0.93032 1.90748 1.51704 1.60247 1.43466 1.20705 0.90565 0.75726 0.82871 1.90598 1.64609 1.52572 1.37481 1.48274 1.08638 1.69080 1.06941 1.21678 0.79300 0.99790 0.99717 1.21887 1.00820 0.97574 0.95994 1.21446 0.96200 1.00369 0.96421 1.18908 0.93797 0.92751 0.92757 0.99345 1.21440 1.27369 1.10663 0.97509 0.91969 1.25681 0.95939 0.94831 1.01820 1.70020 1.38935 1.15260 1.31313 0.85648 0.78351 0.78880 0.79343 1.20747 1.21162 1.18703 1.22005 0.94091 0.99882 0.84240 0.92961 0.93917 0.91203 0.90106 0.89984 0.74584 0.87660 0.88745 0.86676 0.89525 0.89888 0.94388 0.89806 0.93964 0.91999 0.93110 0.90362 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.53 71.98 0.61 -2.88 16 2 C -0.12 -3.10 5.31 30.59 0.16 -2.94 16 3 C 0.13 3.88 1.79 44.24 0.08 3.96 16 4 H 0.09 3.25 6.08 -2.39 -0.01 3.24 16 5 N -0.71 -18.25 5.01 -446.11 -2.23 -20.48 16 6 C 0.50 12.96 6.53 87.65 0.57 13.53 16 7 C -0.16 -2.41 10.32 71.23 0.74 -1.67 16 8 O -0.58 -20.18 14.22 -3.04 -0.04 -20.22 16 9 C 0.51 17.22 6.92 87.66 0.61 17.83 16 10 O -0.57 -20.32 15.40 -3.05 -0.05 -20.36 16 11 N -0.60 -20.86 2.97 -818.91 -2.43 -23.29 16 12 C 0.12 3.79 6.42 86.36 0.55 4.34 16 13 C -0.12 -4.53 6.08 30.67 0.19 -4.34 16 14 C -0.11 -4.72 4.96 30.62 0.15 -4.57 16 15 C 0.04 1.76 2.25 -11.46 -0.03 1.73 16 16 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 17 C -0.53 -27.70 8.57 25.60 0.22 -27.48 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.02 0.87 5.30 84.66 0.45 1.32 16 20 N -0.92 -51.82 11.31 21.45 0.24 -51.58 16 21 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 25 C 0.12 4.54 4.88 86.36 0.42 4.96 16 26 H 0.05 1.39 5.63 -2.39 -0.01 1.38 16 27 H 0.04 1.30 7.88 -2.39 -0.02 1.28 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.05 7.13 -2.39 -0.02 2.03 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.42 9.27 7.76 -92.71 -0.72 8.55 16 32 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 2.73 7.04 -2.39 -0.02 2.71 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 41 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.08 2.90 5.06 -2.39 -0.01 2.89 16 43 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -65.47 335.82 2.53 -62.95 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.29 Total: 24.66 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.73 Total: 3.80 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -4.42 Total: -95.36 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.09 Total: -40.59 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.47 2.53 -62.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601665656.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.435 kcal (2) G-P(sol) polarization free energy of solvation -65.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds