Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47222 * 2 1 4 4 H 1.08993 * 109.47754 * 54.12646 * 3 2 1 5 5 N 1.46506 * 109.46881 * 294.12926 * 3 2 1 6 6 C 1.34780 * 119.99780 * 85.00104 * 5 3 2 7 7 C 1.50695 * 119.99682 * 180.02562 * 6 5 3 8 8 O 1.21276 * 119.99796 * 0.02562 * 6 5 3 9 9 C 1.50699 * 109.46918 * 174.13411 * 3 2 1 10 10 O 1.21283 * 119.99924 * 103.63611 * 9 3 2 11 11 N 1.34779 * 120.00061 * 283.63380 * 9 3 2 12 12 C 1.46924 * 120.62711 * 354.93617 * 11 9 3 13 13 C 1.53184 * 108.77740 * 233.61061 * 12 11 9 14 14 C 1.53039 * 109.31410 * 305.36472 * 13 12 11 15 15 C 1.53049 * 109.53576 * 61.36604 * 14 13 12 16 16 H 1.09001 * 109.49601 * 58.61943 * 15 14 13 17 17 C 1.50703 * 109.49798 * 178.68361 * 15 14 13 18 18 H 1.07993 * 119.99760 * 120.00409 * 17 15 14 19 19 C 1.37874 * 119.99923 * 300.27417 * 17 15 14 20 20 N 1.31515 * 120.00021 * 179.72787 * 19 17 15 21 21 Si 1.86806 * 120.00247 * 359.72766 * 19 17 15 22 22 H 1.48500 * 109.47222 * 89.99629 * 21 19 17 23 23 H 1.48494 * 109.47364 * 209.99971 * 21 19 17 24 24 H 1.48503 * 109.46882 * 329.99714 * 21 19 17 25 25 C 1.46915 * 120.63258 * 174.94143 * 11 9 3 26 26 H 1.09002 * 109.46875 * 60.00381 * 1 2 3 27 27 H 1.08991 * 109.47378 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46812 * 300.00624 * 1 2 3 29 29 H 1.08999 * 109.46728 * 239.99521 * 2 1 3 30 30 H 1.09002 * 109.46875 * 119.99619 * 2 1 3 31 31 H 0.96993 * 119.99971 * 265.00552 * 5 3 2 32 32 H 1.09003 * 109.47357 * 90.00361 * 7 6 5 33 33 H 1.09007 * 109.47291 * 209.99825 * 7 6 5 34 34 H 1.08998 * 109.47668 * 330.00134 * 7 6 5 35 35 H 1.09005 * 109.58548 * 113.82095 * 12 11 9 36 36 H 1.09003 * 109.58755 * 353.40289 * 12 11 9 37 37 H 1.09002 * 109.50009 * 185.41937 * 13 12 11 38 38 H 1.09000 * 109.50221 * 65.31760 * 13 12 11 39 39 H 1.08998 * 109.46342 * 301.34815 * 14 13 12 40 40 H 1.08994 * 109.46433 * 181.38622 * 14 13 12 41 41 H 0.96999 * 120.00056 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.58691 * 6.60652 * 25 11 9 43 43 H 1.08996 * 109.58890 * 246.18233 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5935 1.9858 0.8326 5 7 1.6705 2.0911 -1.2606 6 6 0.4549 2.6574 -1.3960 7 6 0.0746 3.3240 -2.6929 8 8 -0.3326 2.6304 -0.4742 9 6 3.5400 1.4449 0.1452 10 8 4.2424 1.6585 -0.8202 11 7 4.1010 1.2096 1.3479 12 6 3.2655 1.0590 2.5470 13 6 3.7602 2.0356 3.6185 14 6 5.2539 1.8073 3.8606 15 6 6.0287 2.0752 2.5682 16 1 5.8463 3.0986 2.2403 17 6 7.5026 1.8815 2.8160 18 1 8.0513 1.1392 2.2555 19 6 8.1492 2.6482 3.7620 20 7 9.4342 2.4755 3.9820 21 14 7.2000 3.9323 4.7314 22 1 6.6523 3.3155 5.9662 23 1 8.1088 5.0484 5.0967 24 1 6.0842 4.4539 3.9018 25 6 5.5596 1.0990 1.4848 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.3005 2.1129 -1.9977 32 1 -0.3935 2.5939 -3.3531 33 1 -0.6262 4.1347 -2.4929 34 1 0.9681 3.7257 -3.1707 35 1 3.3423 0.0377 2.9200 36 1 2.2277 1.2827 2.2997 37 1 3.2116 1.8673 4.5453 38 1 3.5987 3.0592 3.2804 39 1 5.4175 0.7765 4.1750 40 1 5.6031 2.4842 4.6403 41 1 9.8891 3.0146 4.6479 42 1 6.0357 1.3493 0.5367 43 1 5.8236 0.0810 1.7710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601665657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = -78.819381 kcal Electronic energy + Delta-G solvation = -23441.859774 eV Core-core repulsion = 20100.774700 eV Total energy + Delta-G solvation = -3341.085074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66339 -39.31493 -37.22300 -35.42985 -33.67803 -32.68816 -31.78766 -30.68985 -29.89045 -27.43725 -25.12437 -24.70465 -22.15570 -21.73830 -20.74913 -20.05494 -18.80001 -17.57318 -16.79648 -16.76397 -16.13585 -15.88800 -15.11993 -14.93802 -14.52808 -14.18335 -13.88913 -13.71422 -13.51842 -13.23081 -12.85536 -12.77206 -12.67209 -12.58119 -12.38273 -12.15683 -11.94155 -11.66594 -11.39450 -11.20976 -11.02596 -10.74923 -10.38691 -10.20468 -10.02546 -9.89935 -9.73497 -9.40261 -9.16752 -9.04339 -8.60582 -8.21720 -6.13590 -4.14067 2.45328 2.68973 2.88339 3.21179 3.33952 3.35625 3.41963 4.35019 4.40996 4.64891 4.79710 4.84909 5.00534 5.07049 5.16127 5.17326 5.23601 5.27208 5.37125 5.50881 5.60272 5.66895 5.78033 5.81858 5.91330 5.93771 6.00686 6.10397 6.22655 6.27268 6.31774 6.44504 6.58952 6.67028 6.76959 7.06577 7.38093 7.39983 7.65450 7.68731 8.07139 8.28660 8.43019 8.89182 9.47898 10.99330 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.004348 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.926500 B = 6438.524767 C = 6491.275130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.124 3.876 4 H 0.111 0.889 5 N -0.712 5.712 6 C 0.512 3.488 7 C -0.172 4.172 8 O -0.545 6.545 9 C 0.508 3.492 10 O -0.544 6.544 11 N -0.600 5.600 12 C 0.106 3.894 13 C -0.140 4.140 14 C -0.123 4.123 15 C 0.005 3.995 16 H 0.030 0.970 17 C -0.516 4.516 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.127 3.873 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.411 0.589 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.774 -2.802 -8.208 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.015 3.985 4 H 0.128 0.872 5 N -0.366 5.366 6 C 0.299 3.701 7 C -0.232 4.232 8 O -0.423 6.423 9 C 0.295 3.705 10 O -0.422 6.422 11 N -0.332 5.332 12 C -0.017 4.017 13 C -0.178 4.178 14 C -0.160 4.160 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.554 4.554 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.192 1.192 25 C 0.006 3.994 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.780 -2.651 -7.957 20.567 hybrid contribution 0.023 0.742 0.472 0.879 sum -18.757 -1.910 -7.485 20.285 Atomic orbital electron populations 1.21795 0.94048 1.00870 1.03175 1.21880 0.97465 0.94020 1.03325 1.20935 0.92568 0.95767 0.89205 0.87183 1.45906 1.16930 1.57588 1.16194 1.20762 0.81173 0.77829 0.90303 1.21874 1.03825 1.02266 0.95203 1.90721 1.50347 1.59266 1.41969 1.20420 0.89666 0.77041 0.83415 1.90665 1.63639 1.49726 1.38219 1.48278 1.09073 1.69309 1.06492 1.21837 0.93957 1.00178 0.85769 1.22011 0.98824 0.99232 0.97740 1.22000 0.92117 1.01590 1.00329 1.19469 0.96027 0.95320 0.90619 0.95175 1.20888 0.90959 1.21708 1.21828 0.90568 1.24973 0.94706 0.96625 0.96628 1.69889 1.09004 1.40595 1.34072 0.86836 0.79519 0.81305 0.80497 1.20527 1.22470 1.19157 1.21833 0.75867 1.00192 1.01459 0.92406 0.93136 0.91978 0.91127 0.90354 0.75220 0.88875 0.88820 0.90000 0.90972 0.90378 0.91459 0.92066 0.91806 0.93120 0.92546 0.89474 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.53 37.16 0.32 -1.17 16 2 C -0.13 -1.39 5.38 -26.73 -0.14 -1.54 16 3 C 0.12 1.58 1.80 -69.08 -0.12 1.46 16 4 H 0.11 1.46 5.96 -51.93 -0.31 1.15 16 5 N -0.71 -8.26 4.99 -54.93 -0.27 -8.54 16 6 C 0.51 5.76 6.55 -10.99 -0.07 5.69 16 7 C -0.17 -1.22 10.30 36.00 0.37 -0.85 16 8 O -0.55 -7.83 14.24 5.56 0.08 -7.75 16 9 C 0.51 8.17 6.96 -10.99 -0.08 8.09 16 10 O -0.54 -10.29 15.30 5.55 0.08 -10.21 16 11 N -0.60 -9.89 2.97 -172.78 -0.51 -10.41 16 12 C 0.11 1.43 5.44 -3.72 -0.02 1.41 16 13 C -0.14 -2.19 6.08 -26.62 -0.16 -2.35 16 14 C -0.12 -2.45 4.66 -26.69 -0.12 -2.58 16 15 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 16 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 17 C -0.52 -14.05 9.15 -34.44 -0.32 -14.36 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 21 Si 0.89 21.62 24.39 -169.99 -4.15 17.48 16 22 H -0.28 -6.51 6.85 56.52 0.39 -6.13 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 25 C 0.13 2.52 5.66 -3.72 -0.02 2.50 16 26 H 0.06 0.66 5.63 -51.93 -0.29 0.37 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.70 7.90 -51.92 -0.41 0.29 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.80 7.16 -51.93 -0.37 0.42 16 31 H 0.41 4.49 7.72 -40.82 -0.32 4.18 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.89 5.33 -51.93 -0.28 0.61 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 1.10 3.23 -51.93 -0.17 0.93 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 1.87 7.00 -51.93 -0.36 1.51 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -32.44 329.00 -6.38 -38.83 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.71 Total: 3.69 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.64 Total: -1.80 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.01 Total: -45.20 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.16 Total: -17.96 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.15 Total: 17.48 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.44 -6.38 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601665657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.993 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds