Wall clock time and date at job start Tue Mar 31 2020 06:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46987 * 2 1 4 4 H 1.09000 * 109.46816 * 306.72662 * 3 2 1 5 5 N 1.46503 * 109.47002 * 66.72424 * 3 2 1 6 6 C 1.34778 * 119.99856 * 274.99751 * 5 3 2 7 7 C 1.50700 * 119.99992 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00189 * 0.02562 * 6 5 3 9 9 C 1.50693 * 109.47091 * 186.72471 * 3 2 1 10 10 O 1.21275 * 119.99999 * 257.01516 * 9 3 2 11 11 N 1.34784 * 119.99982 * 77.01596 * 9 3 2 12 12 C 1.46926 * 120.63000 * 354.87037 * 11 9 3 13 13 C 1.53185 * 108.77301 * 126.41286 * 12 11 9 14 14 C 1.53044 * 109.31496 * 54.63585 * 13 12 11 15 15 C 1.53038 * 109.53585 * 298.63693 * 14 13 12 16 16 H 1.09003 * 109.52345 * 301.38957 * 15 14 13 17 17 C 1.50705 * 109.49663 * 181.31859 * 15 14 13 18 18 H 1.08003 * 119.99408 * 245.58125 * 17 15 14 19 19 C 1.37869 * 120.00153 * 65.29971 * 17 15 14 20 20 N 1.31510 * 120.00597 * 356.38474 * 19 17 15 21 21 Si 1.86810 * 119.99795 * 176.38342 * 19 17 15 22 22 H 1.48495 * 109.46965 * 94.99453 * 21 19 17 23 23 H 1.48498 * 109.46796 * 214.99953 * 21 19 17 24 24 H 1.48503 * 109.47095 * 334.99563 * 21 19 17 25 25 C 1.46922 * 120.62589 * 174.89472 * 11 9 3 26 26 H 1.08996 * 109.47098 * 60.00278 * 1 2 3 27 27 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47346 * 300.00188 * 1 2 3 29 29 H 1.08993 * 109.47346 * 239.99812 * 2 1 3 30 30 H 1.08996 * 109.47098 * 119.99722 * 2 1 3 31 31 H 0.96996 * 119.99809 * 95.00259 * 5 3 2 32 32 H 1.09004 * 109.46546 * 60.00365 * 7 6 5 33 33 H 1.08997 * 109.47195 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47359 * 300.00604 * 7 6 5 35 35 H 1.08996 * 109.58715 * 246.20371 * 12 11 9 36 36 H 1.08998 * 109.58557 * 6.62742 * 12 11 9 37 37 H 1.09006 * 109.49920 * 174.58475 * 13 12 11 38 38 H 1.09001 * 109.50315 * 294.68367 * 13 12 11 39 39 H 1.09000 * 109.46327 * 178.61038 * 14 13 12 40 40 H 1.09000 * 109.45620 * 58.64952 * 14 13 12 41 41 H 0.96991 * 120.00500 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.58621 * 113.80537 * 25 11 9 43 43 H 1.08997 * 109.59318 * 353.37228 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5817 1.9899 -0.8237 5 7 1.6882 2.0849 1.2688 6 6 0.4747 2.6504 1.4241 7 6 0.1130 3.3117 2.7291 8 8 -0.3262 2.6272 0.5136 9 6 3.5378 1.4458 -0.1664 10 8 4.2539 1.6430 0.7923 11 7 4.0814 1.2296 -1.3806 12 6 3.2341 0.8787 -2.5285 13 6 3.5254 1.8544 -3.6729 14 6 5.0259 1.8479 -3.9740 15 6 5.7983 2.3104 -2.7364 16 1 5.4692 3.3105 -2.4543 17 6 7.2734 2.3346 -3.0441 18 1 7.9424 1.6568 -2.5347 19 6 7.7680 3.2179 -3.9800 20 7 6.9448 3.9897 -4.6555 21 14 9.6077 3.3186 -4.2885 22 1 9.9648 2.4505 -5.4392 23 1 9.9824 4.7230 -4.5927 24 1 10.3382 2.8624 -3.0788 25 6 5.5327 1.3399 -1.5813 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.3286 2.1032 1.9971 32 1 0.8103 4.1251 2.9297 33 1 -0.9004 3.7083 2.6668 34 1 0.1674 2.5795 3.5348 35 1 3.4571 -0.1386 -2.8498 36 1 2.1845 0.9523 -2.2438 37 1 2.9746 1.5473 -4.5620 38 1 3.2172 2.8587 -3.3822 39 1 5.2327 2.5230 -4.8044 40 1 5.3383 0.8382 -4.2406 41 1 7.2929 4.6113 -5.3136 42 1 5.9433 0.3601 -1.8256 43 1 5.9998 1.7178 -0.6718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601665658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:33 Heat of formation + Delta-G solvation = -88.362977 kcal Electronic energy + Delta-G solvation = -23357.197421 eV Core-core repulsion = 20015.698506 eV Total energy + Delta-G solvation = -3341.498916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54645 -39.17229 -36.95169 -35.35030 -33.60434 -32.62388 -31.40404 -30.31986 -29.80696 -27.19553 -25.11024 -24.32083 -22.03328 -21.75748 -20.63757 -19.94280 -18.56863 -17.45615 -16.67615 -16.43999 -15.87896 -15.79557 -14.89516 -14.78682 -14.43475 -14.12140 -13.67297 -13.55012 -13.34976 -12.89505 -12.84682 -12.70034 -12.61386 -12.26596 -12.07104 -12.01100 -11.81526 -11.55463 -11.02845 -10.98486 -10.85686 -10.77634 -10.35431 -10.01173 -9.95305 -9.87288 -9.57696 -9.43624 -9.05856 -8.88687 -8.41942 -8.01427 -6.06340 -4.12834 2.53905 2.79582 3.01367 3.27175 3.34821 3.38543 3.55429 4.39704 4.52874 4.72885 4.88958 4.97158 5.10924 5.21740 5.22799 5.27257 5.33584 5.46793 5.55697 5.67739 5.69552 5.77921 5.87992 6.00154 6.03512 6.26432 6.29321 6.31964 6.38029 6.41920 6.58912 6.72696 6.85785 7.09844 7.26572 7.46837 7.64150 7.80830 7.89879 7.99585 8.15939 8.30135 8.44587 8.91163 9.52429 11.00353 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.004086 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.206680 B = 6851.223791 C = 7098.677943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.125 3.875 4 H 0.111 0.889 5 N -0.712 5.712 6 C 0.511 3.489 7 C -0.173 4.173 8 O -0.544 6.544 9 C 0.508 3.492 10 O -0.550 6.550 11 N -0.595 5.595 12 C 0.103 3.897 13 C -0.136 4.136 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.032 0.968 17 C -0.516 4.516 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.117 3.883 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.410 0.590 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 -5.908 9.311 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.128 0.872 5 N -0.366 5.366 6 C 0.299 3.701 7 C -0.233 4.233 8 O -0.422 6.422 9 C 0.294 3.706 10 O -0.429 6.429 11 N -0.326 5.326 12 C -0.020 4.020 13 C -0.175 4.175 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.050 0.950 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.003 4.003 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.920 -5.674 9.016 16.745 hybrid contribution 1.359 0.138 -0.043 1.367 sum -11.560 -5.536 8.973 15.646 Atomic orbital electron populations 1.21798 0.94075 1.00798 1.03261 1.21935 0.97507 0.94220 1.03238 1.20904 0.92846 0.95664 0.88913 0.87162 1.45845 1.16743 1.57846 1.16169 1.20755 0.81252 0.77832 0.90300 1.21906 1.04436 1.01968 0.94970 1.90724 1.49468 1.58889 1.43083 1.20399 0.89666 0.77167 0.83380 1.90640 1.62713 1.50773 1.38774 1.48261 1.09666 1.66994 1.07699 1.21909 0.93785 0.99183 0.87118 1.22020 1.00556 0.98616 0.96269 1.21623 0.90002 1.00572 1.02592 1.18992 0.95540 0.93899 0.89502 0.95010 1.21051 0.92024 1.19855 1.22541 0.92448 1.24936 0.97796 0.95369 0.95629 1.69896 1.34104 1.23918 1.24691 0.86574 0.85572 0.77332 0.78515 1.20751 1.21173 1.19783 1.22067 0.76292 1.00495 1.01495 0.91962 0.93217 0.92326 0.90327 0.91220 0.75300 0.89262 0.88952 0.89452 0.91433 0.90723 0.92217 0.92265 0.89151 0.94425 0.92935 0.92498 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.55 37.16 0.32 -1.29 16 2 C -0.13 -1.52 5.21 -26.73 -0.14 -1.66 16 3 C 0.13 1.74 1.78 -69.08 -0.12 1.62 16 4 H 0.11 1.63 6.41 -51.93 -0.33 1.30 16 5 N -0.71 -8.90 5.00 -54.93 -0.27 -9.17 16 6 C 0.51 6.19 6.59 -10.98 -0.07 6.11 16 7 C -0.17 -1.35 10.32 36.01 0.37 -0.98 16 8 O -0.54 -8.32 14.23 5.56 0.08 -8.24 16 9 C 0.51 8.74 6.98 -10.99 -0.08 8.66 16 10 O -0.55 -10.88 15.32 5.56 0.09 -10.80 16 11 N -0.59 -10.60 2.97 -172.78 -0.51 -11.11 16 12 C 0.10 1.56 5.37 -3.71 -0.02 1.54 16 13 C -0.14 -2.38 6.08 -26.61 -0.16 -2.55 16 14 C -0.11 -2.40 5.01 -26.69 -0.13 -2.54 16 15 C 0.04 0.96 2.19 -91.65 -0.20 0.76 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 17 C -0.52 -13.74 8.50 -34.44 -0.29 -14.03 16 18 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 19 C 0.06 1.74 5.35 -17.82 -0.10 1.65 16 20 N -0.89 -24.77 11.57 55.43 0.64 -24.13 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.12 2.46 5.64 -3.71 -0.02 2.44 16 26 H 0.06 0.76 7.94 -51.93 -0.41 0.34 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.71 5.61 -51.93 -0.29 0.42 16 29 H 0.08 0.87 6.50 -51.93 -0.34 0.53 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 4.81 7.72 -40.82 -0.32 4.49 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.96 4.89 -51.93 -0.25 0.70 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 2.26 6.34 -51.93 -0.33 1.93 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 1.80 7.04 -51.93 -0.37 1.43 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -30.66 335.56 -7.42 -38.08 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.83 Total: 4.72 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.65 Total: -0.27 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.15 Total: -44.41 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.16 Total: -19.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.66 -7.42 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601665658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.282 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds