Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 H 1.09004 * 109.46991 * 54.27812 * 3 2 1 5 5 C 1.50703 * 109.47177 * 174.27759 * 3 2 1 6 6 H 1.08001 * 120.00104 * 25.67597 * 5 3 2 7 7 C 1.37880 * 119.99878 * 205.67339 * 5 3 2 8 8 N 1.31509 * 120.00297 * 353.27696 * 7 5 3 9 9 Si 1.86805 * 119.99548 * 173.27495 * 7 5 3 10 10 H 1.48500 * 109.47106 * 0.02562 * 9 7 5 11 11 H 1.48490 * 109.47096 * 239.99676 * 9 7 5 12 12 H 1.48502 * 109.46777 * 120.00161 * 9 7 5 13 13 N 1.46501 * 109.47145 * 294.27870 * 3 2 1 14 14 C 1.34783 * 119.99746 * 85.00150 * 13 3 2 15 15 O 1.21276 * 119.99741 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99699 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.62943 * 300.39473 * 16 14 13 18 18 C 1.53062 * 109.63093 * 179.97438 * 16 14 13 19 19 C 1.51790 * 110.74090 * 155.38239 * 18 16 14 20 20 C 1.51779 * 113.81238 * 66.80682 * 19 18 16 21 21 C 1.52987 * 110.88614 * 292.99755 * 20 19 18 22 22 N 1.47195 * 108.66541 * 86.46326 * 21 20 19 23 23 C 1.46498 * 119.78552 * 108.04325 * 22 21 20 24 24 C 1.33378 * 120.42477 * 288.04656 * 22 21 20 25 25 O 1.21284 * 119.88609 * 180.29152 * 24 22 21 26 26 H 1.09006 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47184 * 299.99995 * 1 2 3 28 28 H 1.09003 * 109.46881 * 60.00245 * 1 2 3 29 29 H 1.08992 * 109.47623 * 239.99853 * 2 1 3 30 30 H 1.09003 * 109.46881 * 119.99755 * 2 1 3 31 31 H 0.97004 * 120.00142 * 354.66353 * 8 7 5 32 32 H 0.96998 * 120.00240 * 264.99688 * 13 3 2 33 33 H 1.09001 * 109.22376 * 275.70757 * 18 16 14 34 34 H 1.08998 * 109.22164 * 35.10063 * 18 16 14 35 35 H 1.08999 * 108.61531 * 187.92808 * 19 18 16 36 36 H 1.08999 * 108.62069 * 305.82863 * 19 18 16 37 37 H 1.09004 * 109.19031 * 53.35842 * 20 19 18 38 38 H 1.08999 * 109.19975 * 172.62948 * 20 19 18 39 39 H 1.08996 * 109.60917 * 206.22139 * 21 20 19 40 40 H 1.09002 * 109.60200 * 326.54840 * 21 20 19 41 41 H 1.08994 * 109.47003 * 90.00225 * 23 22 21 42 42 H 1.09000 * 109.47112 * 209.99909 * 23 22 21 43 43 H 1.08991 * 109.46993 * 329.99915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9851 0.8344 5 6 3.5403 1.4449 0.1417 6 1 4.1148 0.5899 -0.1828 7 6 4.1797 2.5389 0.6855 8 7 3.4985 3.6303 0.9581 9 14 6.0134 2.4705 1.0350 10 1 6.5432 1.1404 0.6407 11 1 6.2494 2.6879 2.4848 12 1 6.7054 3.5291 0.2566 13 7 1.6673 2.0922 -1.2591 14 6 0.4514 2.6586 -1.3910 15 8 -0.3339 2.6308 -0.4672 16 6 0.0682 3.3274 -2.6859 17 1 0.7648 4.1382 -2.8994 18 6 -1.3529 3.8853 -2.5758 19 6 -1.5563 5.0339 -3.5470 20 6 -1.5158 4.6172 -5.0060 21 6 -0.1142 4.1477 -5.4004 22 7 0.0110 2.7166 -5.0793 23 6 0.0371 1.7279 -6.1600 24 6 0.1007 2.3144 -3.8108 25 8 0.2089 1.1332 -3.5576 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.5640 3.6945 0.7060 32 1 2.2956 2.1149 -1.9977 33 1 -2.0676 3.0938 -2.8012 34 1 -1.5208 4.2415 -1.5594 35 1 -2.5229 5.4947 -3.3435 36 1 -0.7757 5.7755 -3.3774 37 1 -2.2244 3.8045 -5.1663 38 1 -1.7981 5.4658 -5.6291 39 1 0.0341 4.2969 -6.4699 40 1 0.6317 4.7162 -4.8450 41 1 1.0671 1.5616 -6.4754 42 1 -0.3900 0.7901 -5.8048 43 1 -0.5463 2.0964 -7.0037 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602134523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -92.046100 kcal Electronic energy + Delta-G solvation = -24024.528901 eV Core-core repulsion = 20682.870273 eV Total energy + Delta-G solvation = -3341.658628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66743 -38.49975 -36.72782 -35.25327 -34.31506 -32.13025 -31.62323 -30.71599 -28.48680 -26.70194 -25.64490 -23.95647 -22.88375 -21.01805 -20.44878 -19.57837 -18.59442 -17.45856 -17.31653 -16.57855 -15.65519 -15.39163 -14.84462 -14.40592 -14.25960 -13.92761 -13.77256 -13.68552 -13.21874 -12.92820 -12.87623 -12.75832 -12.38199 -12.13952 -12.10381 -11.85198 -11.51377 -11.07994 -10.94219 -10.84521 -10.76507 -10.69795 -10.56553 -10.20194 -10.11787 -9.69329 -9.53494 -9.04007 -8.75798 -8.61062 -8.54534 -7.59094 -6.48681 -4.28193 2.75624 2.85793 3.38990 3.40840 3.56568 3.60757 4.19429 4.44752 4.53461 4.57182 4.64663 4.87079 5.05566 5.17622 5.21987 5.29626 5.37377 5.39254 5.43902 5.58253 5.71580 5.75275 5.80323 5.90773 6.02595 6.20334 6.21780 6.27938 6.36495 6.39840 6.47542 6.90480 7.00182 7.13778 7.27693 7.32276 7.46997 7.78557 8.02699 8.26336 8.35466 8.68159 8.90512 9.32065 9.51554 10.88399 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.005399 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.187678 B = 5184.886679 C = 5383.191132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.244 3.756 4 H 0.052 0.948 5 C -0.605 4.605 6 H 0.056 0.944 7 C 0.029 3.971 8 N -0.894 5.894 9 Si 1.074 2.926 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.288 1.288 13 N -0.688 5.688 14 C 0.521 3.479 15 O -0.555 6.555 16 C -0.133 4.133 17 H 0.110 0.890 18 C -0.096 4.096 19 C -0.123 4.123 20 C -0.140 4.140 21 C 0.108 3.892 22 N -0.616 5.616 23 C 0.085 3.915 24 C 0.524 3.476 25 O -0.523 6.523 26 H 0.024 0.976 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.278 0.722 32 H 0.384 0.616 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 3.556 -15.308 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.145 3.855 4 H 0.070 0.930 5 C -0.644 4.644 6 H 0.074 0.926 7 C -0.179 4.179 8 N -0.527 5.527 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.210 1.210 12 H -0.214 1.214 13 N -0.335 5.335 14 C 0.304 3.696 15 O -0.436 6.436 16 C -0.158 4.158 17 H 0.128 0.872 18 C -0.134 4.134 19 C -0.160 4.160 20 C -0.178 4.178 21 C -0.014 4.014 22 N -0.350 5.350 23 C -0.058 4.058 24 C 0.311 3.689 25 O -0.399 6.399 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.217 0.783 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.869 3.714 -13.819 15.873 hybrid contribution -0.936 -0.709 -1.295 1.748 sum -7.805 3.006 -15.114 17.274 Atomic orbital electron populations 1.21840 0.97032 0.98502 1.02398 1.21772 0.94367 0.99025 1.00161 1.18945 0.94761 0.88780 0.83043 0.92961 1.22209 0.91253 1.04833 1.46100 0.92591 1.25995 1.06604 0.92264 0.93019 1.70671 1.11907 1.27555 1.42592 0.83495 0.74020 0.75363 0.76976 1.21313 1.21038 1.21429 1.47447 1.13418 1.54497 1.18146 1.19690 0.83332 0.79213 0.87387 1.90610 1.51034 1.60761 1.41168 1.21860 1.00956 0.98818 0.94146 0.87184 1.21094 0.93040 0.97742 1.01516 1.21211 1.02692 0.98291 0.93829 1.21829 0.97144 1.01749 0.97120 1.21866 0.97490 0.80541 1.01535 1.47723 1.73613 1.07571 1.06099 1.21640 1.01673 0.93251 0.89225 1.20139 0.75968 0.89548 0.83235 1.90777 1.48205 1.17605 1.83274 0.95652 0.93388 0.92216 0.93622 0.92753 0.91107 0.78346 0.91722 0.88827 0.91388 0.91621 0.91292 0.90639 0.89651 0.90339 0.92708 0.90525 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.53 37.16 0.32 -2.89 16 2 C -0.11 -2.75 5.58 -26.73 -0.15 -2.90 16 3 C 0.24 6.38 1.72 -69.08 -0.12 6.26 16 4 H 0.05 1.54 6.57 -51.93 -0.34 1.20 16 5 C -0.61 -16.61 8.49 -34.44 -0.29 -16.90 16 6 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 7 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 8 N -0.89 -26.37 13.56 55.43 0.75 -25.62 16 9 Si 1.07 24.45 29.91 -169.99 -5.08 19.36 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.69 -16.15 4.60 -54.93 -0.25 -16.40 16 14 C 0.52 11.43 5.15 -10.98 -0.06 11.38 16 15 O -0.56 -13.65 12.65 5.56 0.07 -13.58 16 16 C -0.13 -2.21 2.22 -92.54 -0.21 -2.42 16 17 H 0.11 1.62 6.79 -51.93 -0.35 1.27 16 18 C -0.10 -1.37 4.79 -27.31 -0.13 -1.50 16 19 C -0.12 -1.22 5.28 -27.96 -0.15 -1.37 16 20 C -0.14 -1.14 5.73 -27.36 -0.16 -1.30 16 21 C 0.11 0.93 5.87 -3.67 -0.02 0.91 16 22 N -0.62 -7.46 2.86 -181.12 -0.52 -7.98 16 23 C 0.08 0.87 10.35 59.85 0.62 1.48 16 24 C 0.52 8.60 6.53 -11.25 -0.07 8.53 16 25 O -0.52 -10.68 15.37 5.55 0.09 -10.59 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 28 H 0.06 1.44 5.63 -51.93 -0.29 1.15 16 29 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.28 8.37 6.93 -40.82 -0.28 8.09 16 32 H 0.38 8.71 8.52 -40.82 -0.35 8.37 16 33 H 0.06 0.97 7.86 -51.93 -0.41 0.57 16 34 H 0.09 1.51 7.13 -51.93 -0.37 1.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 37 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.52 7.92 -51.93 -0.41 0.11 16 40 H 0.08 0.68 6.73 -51.93 -0.35 0.33 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.92 7.38 -51.93 -0.38 0.54 16 43 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -33.27 335.93 -7.33 -40.61 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.93 Total: 9.13 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.51 Total: 0.00 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.02 Total: -50.00 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.16 Total: -24.17 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.27 -7.33 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602134523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.441 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds