Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47295 * 2 1 4 4 H 1.08997 * 109.47166 * 54.99693 * 3 2 1 5 5 C 1.50695 * 109.47077 * 175.00317 * 3 2 1 6 6 H 1.07997 * 120.00524 * 119.99731 * 5 3 2 7 7 C 1.37883 * 120.00011 * 299.99288 * 5 3 2 8 8 N 1.31522 * 119.99679 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00129 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47291 * 60.00202 * 9 7 5 11 11 H 1.48506 * 109.46700 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46890 * 299.99617 * 9 7 5 13 13 N 1.46506 * 109.46485 * 294.99671 * 3 2 1 14 14 C 1.34779 * 119.99958 * 85.00336 * 13 3 2 15 15 O 1.21283 * 119.99886 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99969 * 179.97438 * 14 13 3 17 17 H 1.08994 * 109.63246 * 92.29424 * 16 14 13 18 18 C 1.53071 * 109.63248 * 212.69051 * 16 14 13 19 19 C 1.51795 * 110.74132 * 34.78332 * 18 16 14 20 20 C 1.51777 * 113.80757 * 66.80998 * 19 18 16 21 21 C 1.52988 * 110.88425 * 292.99422 * 20 19 18 22 22 N 1.47194 * 108.66464 * 86.46922 * 21 20 19 23 23 C 1.46499 * 119.78285 * 108.04091 * 22 21 20 24 24 C 1.33369 * 120.42545 * 288.04177 * 22 21 20 25 25 O 1.21280 * 119.88591 * 180.28764 * 24 22 21 26 26 H 1.09005 * 109.46829 * 300.00745 * 1 2 3 27 27 H 1.08997 * 109.47166 * 60.00311 * 1 2 3 28 28 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47251 * 239.99715 * 2 1 3 30 30 H 1.09007 * 109.47123 * 119.99661 * 2 1 3 31 31 H 0.96994 * 119.99689 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00201 * 264.99865 * 13 3 2 33 33 H 1.08995 * 109.22151 * 155.10947 * 18 16 14 34 34 H 1.09001 * 109.22050 * 274.46213 * 18 16 14 35 35 H 1.08994 * 108.61246 * 187.92506 * 19 18 16 36 36 H 1.08993 * 108.61560 * 305.69360 * 19 18 16 37 37 H 1.08995 * 109.19771 * 53.35881 * 20 19 18 38 38 H 1.09003 * 109.19412 * 172.68225 * 20 19 18 39 39 H 1.09007 * 109.60072 * 206.22237 * 21 20 19 40 40 H 1.09001 * 109.60173 * 326.71241 * 21 20 19 41 41 H 1.09005 * 109.47230 * 90.00083 * 23 22 21 42 42 H 1.09000 * 109.46884 * 209.99485 * 23 22 21 43 43 H 1.08997 * 109.47498 * 329.99823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8812 1.3817 10 1 6.4996 2.2814 1.3820 11 1 6.3977 0.2178 2.6510 12 1 6.5974 0.1470 0.2349 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3395 2.6320 -0.4346 16 6 0.0367 3.3384 -2.6547 17 1 -0.4771 2.6243 -3.2982 18 6 -0.8907 4.5180 -2.3521 19 6 -0.4989 5.1891 -1.0481 20 6 0.8511 5.8809 -1.0965 21 6 1.9813 4.8612 -1.2497 22 7 2.1721 4.5811 -2.6821 23 6 3.3595 5.0916 -3.3715 24 6 1.2709 3.8654 -3.3562 25 8 1.4405 3.6360 -4.5349 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0610 2.9499 32 1 2.2719 2.1230 -1.9979 33 1 -0.8249 5.2434 -3.1629 34 1 -1.9166 4.1576 -2.2761 35 1 -1.2594 5.9276 -0.7947 36 1 -0.4752 4.4345 -0.2619 37 1 0.8715 6.5682 -1.9422 38 1 0.9990 6.4430 -0.1744 39 1 2.9013 5.2694 -0.8311 40 1 1.7165 3.9409 -0.7290 41 1 4.1618 4.3565 -3.3064 42 1 3.1203 5.2764 -4.4188 43 1 3.6802 6.0218 -2.9025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602134524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -61.713087 kcal Electronic energy + Delta-G solvation = -24732.126813 eV Core-core repulsion = 21391.783523 eV Total energy + Delta-G solvation = -3340.343290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24716 -38.67447 -36.30026 -35.47572 -34.09490 -32.59844 -31.48004 -30.72475 -28.27773 -26.94346 -25.52362 -23.91245 -23.05217 -21.42370 -20.02339 -19.57575 -18.96368 -17.70501 -16.63082 -16.36748 -15.65510 -15.30349 -15.05252 -14.88357 -14.31763 -13.91471 -13.68986 -13.50863 -13.11523 -12.87633 -12.74887 -12.59782 -12.40262 -12.11359 -11.75619 -11.62236 -11.52144 -11.29157 -11.05092 -10.87689 -10.75229 -10.66619 -10.39495 -10.27903 -10.14404 -9.71288 -9.65703 -9.14944 -8.93194 -8.57806 -8.52952 -7.84754 -6.18726 -4.28478 2.70735 3.06017 3.18774 3.20876 3.27009 3.27998 3.89655 4.30634 4.48355 4.84164 4.99388 5.02555 5.12742 5.23953 5.36843 5.41177 5.47657 5.61622 5.69857 5.79700 5.84748 5.88083 6.02486 6.16231 6.22900 6.30793 6.34692 6.40436 6.57408 6.58228 6.71301 6.98604 7.11313 7.26884 7.32438 7.46688 7.54136 7.63622 7.80300 8.10344 8.23875 8.50187 8.67051 8.93661 9.38708 10.86278 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.007035 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.907271 B = 3979.186401 C = 4674.400835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.517 3.483 15 O -0.531 6.531 16 C -0.133 4.133 17 H 0.126 0.874 18 C -0.086 4.086 19 C -0.157 4.157 20 C -0.133 4.133 21 C 0.073 3.927 22 N -0.599 5.599 23 C 0.082 3.918 24 C 0.521 3.479 25 O -0.551 6.551 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 9.145 -6.383 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.302 3.698 15 O -0.410 6.410 16 C -0.157 4.157 17 H 0.144 0.856 18 C -0.124 4.124 19 C -0.194 4.194 20 C -0.172 4.172 21 C -0.050 4.050 22 N -0.331 5.331 23 C -0.060 4.060 24 C 0.308 3.692 25 O -0.430 6.430 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.994 8.885 -6.108 11.498 hybrid contribution 1.383 0.008 -0.308 1.417 sum -2.611 8.893 -6.416 11.273 Atomic orbital electron populations 1.21843 0.98276 0.98227 1.01146 1.21956 0.92679 0.99797 1.02429 1.18843 0.94363 0.89343 0.80563 0.92990 1.21139 0.90536 1.39406 1.06221 0.92233 1.24857 0.98493 0.94699 0.95386 1.69875 1.35222 1.37339 1.09315 0.86541 0.84948 0.78324 0.77491 1.20192 1.21122 1.20195 1.46901 1.14406 1.55456 1.18897 1.19695 0.82767 0.79058 0.88236 1.90601 1.51165 1.59405 1.39856 1.22005 0.96078 1.00119 0.97517 0.85597 1.20984 0.98560 0.94599 0.98247 1.21669 0.96239 1.01672 0.99779 1.21738 0.95211 0.98087 1.02137 1.22710 0.99615 1.02464 0.80210 1.47680 1.22155 1.52265 1.10992 1.21692 0.87110 0.98995 0.98220 1.20128 0.84035 0.78228 0.86850 1.90693 1.77572 1.58791 1.15915 0.93037 0.94368 0.95762 0.95000 0.88161 0.92450 0.77717 0.91760 0.90215 0.92161 0.87201 0.92198 0.90778 0.89529 0.86376 0.92240 0.90769 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.31 2.04 -69.08 -0.14 6.17 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.30 8.73 -34.44 -0.30 -13.60 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.77 5.29 -17.81 -0.09 1.68 16 8 N -0.88 -23.53 11.29 55.43 0.63 -22.90 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.71 -13.88 3.16 -54.93 -0.17 -14.05 16 14 C 0.52 9.38 2.76 -10.99 -0.03 9.35 16 15 O -0.53 -10.73 11.07 5.55 0.06 -10.67 16 16 C -0.13 -2.05 3.10 -92.53 -0.29 -2.34 16 17 H 0.13 1.85 8.14 -51.93 -0.42 1.43 16 18 C -0.09 -1.14 5.24 -27.31 -0.14 -1.28 16 19 C -0.16 -2.11 5.15 -27.96 -0.14 -2.25 16 20 C -0.13 -1.67 5.73 -27.36 -0.16 -1.83 16 21 C 0.07 1.05 5.58 -3.67 -0.02 1.03 16 22 N -0.60 -8.69 2.51 -181.11 -0.45 -9.15 16 23 C 0.08 1.02 10.35 59.85 0.62 1.64 16 24 C 0.52 8.45 5.14 -11.26 -0.06 8.39 16 25 O -0.55 -10.33 16.60 5.56 0.09 -10.24 16 26 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 27 H 0.04 0.79 5.64 -51.93 -0.29 0.49 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.39 7.47 7.06 -40.82 -0.29 7.18 16 33 H 0.06 0.79 7.86 -51.93 -0.41 0.39 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 1.81 4.70 -51.94 -0.24 1.57 16 37 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.16 7.92 -51.93 -0.41 0.75 16 40 H 0.12 2.07 3.26 -51.93 -0.17 1.90 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.93 7.38 -51.93 -0.38 0.55 16 43 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -27.91 322.91 -7.23 -35.14 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.64 Total: 10.97 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.59 Total: 1.15 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.00 Total: -46.10 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.15 Total: -20.90 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.91 -7.23 -35.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602134524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.574 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds