Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47523 * 2 1 4 4 N 1.46505 * 109.46898 * 120.00264 * 2 1 3 5 5 C 1.46503 * 119.99603 * 304.15139 * 4 2 1 6 6 C 1.50696 * 109.47339 * 270.00126 * 5 4 2 7 7 H 1.08000 * 120.00173 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99925 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99893 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46948 * 90.00721 * 10 8 6 12 12 H 1.48504 * 109.46980 * 210.00503 * 10 8 6 13 13 H 1.48503 * 109.46744 * 330.00475 * 10 8 6 14 14 C 1.34770 * 120.00252 * 124.15932 * 4 2 1 15 15 O 1.21282 * 120.00314 * 184.15768 * 14 4 2 16 16 C 1.50707 * 120.00193 * 4.15277 * 14 4 2 17 17 H 1.09001 * 109.69863 * 324.09753 * 16 14 4 18 18 C 1.53341 * 109.67695 * 203.57762 * 16 14 4 19 19 C 1.52920 * 108.80996 * 172.81866 * 18 16 14 20 20 N 1.45759 * 110.48578 * 50.66981 * 19 18 16 21 21 C 1.46505 * 117.94441 * 160.92350 * 20 19 18 22 22 C 1.33347 * 124.10725 * 340.90742 * 20 19 18 23 23 O 1.21286 * 118.24276 * 182.22379 * 22 20 19 24 24 C 1.50172 * 123.51272 * 2.23707 * 22 20 19 25 25 H 1.08997 * 109.46836 * 300.00180 * 1 2 3 26 26 H 1.09003 * 109.46407 * 60.00048 * 1 2 3 27 27 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46994 * 239.99644 * 2 1 3 29 29 H 1.09003 * 109.47316 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47453 * 299.99949 * 3 2 1 31 31 H 1.09006 * 109.47276 * 59.99817 * 3 2 1 32 32 H 1.09001 * 109.47077 * 30.00500 * 5 4 2 33 33 H 1.08998 * 109.46752 * 150.00262 * 5 4 2 34 34 H 0.96997 * 119.99723 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.60285 * 52.97655 * 18 16 14 36 36 H 1.09004 * 109.60337 * 292.65768 * 18 16 14 37 37 H 1.09002 * 109.29768 * 170.98099 * 19 18 16 38 38 H 1.08995 * 109.29982 * 290.56925 * 19 18 16 39 39 H 1.08998 * 109.46857 * 89.99972 * 21 20 19 40 40 H 1.08988 * 109.47048 * 210.00047 * 21 20 19 41 41 H 1.09001 * 109.46657 * 330.00474 * 21 20 19 42 42 H 1.09009 * 109.39776 * 102.54734 * 24 22 20 43 43 H 1.08993 * 109.40891 * 222.37994 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5909 -0.2454 2.5248 6 6 2.5528 0.7940 3.0399 7 1 3.3978 1.0933 2.4376 8 6 2.3535 1.3636 4.2796 9 7 1.3242 0.9994 5.0128 10 14 3.5455 2.6525 4.9178 11 1 3.0865 4.0014 4.4996 12 1 3.5998 2.5857 6.4003 13 1 4.8978 2.3950 4.3608 14 6 2.8608 -1.7355 1.0744 15 8 3.2055 -2.3546 2.0587 16 6 3.3745 -2.1348 -0.2850 17 1 2.5939 -1.9856 -1.0311 18 6 3.7948 -3.6094 -0.2655 19 6 4.1417 -4.0421 -1.6905 20 7 5.0776 -3.1025 -2.2955 21 6 5.8455 -3.5517 -3.4595 22 6 5.2784 -1.8597 -1.8560 23 8 6.0538 -1.1537 -2.4654 24 6 4.5960 -1.2874 -0.6469 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.5915 0.1849 2.4597 33 1 1.5764 -1.0963 3.2059 34 1 1.1838 1.4004 5.8847 35 1 2.9738 -4.2187 0.1122 36 1 4.6670 -3.7325 0.3767 37 1 4.5925 -5.0343 -1.6661 38 1 3.2313 -4.0747 -2.2889 39 1 5.2920 -3.3227 -4.3702 40 1 6.8071 -3.0392 -3.4801 41 1 6.0083 -4.6275 -3.3941 42 1 5.2913 -1.2823 0.1927 43 1 4.2778 -0.2669 -0.8596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -74.682811 kcal Electronic energy + Delta-G solvation = -23676.798389 eV Core-core repulsion = 20335.892689 eV Total energy + Delta-G solvation = -3340.905699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.73579 -39.16510 -36.50199 -35.90148 -34.04105 -32.76189 -30.86367 -29.84509 -28.06342 -26.90623 -26.70926 -24.65375 -23.49565 -22.10065 -21.15054 -18.82196 -18.03602 -16.95229 -16.63413 -16.46684 -16.33389 -15.78151 -15.09083 -14.57457 -14.40148 -14.06735 -13.65080 -13.54979 -13.35826 -13.25486 -12.75819 -12.52961 -12.44849 -12.26866 -11.91811 -11.78155 -11.62717 -11.45362 -11.32175 -11.03011 -10.97028 -10.91022 -10.81491 -10.50286 -10.32133 -10.02547 -9.93638 -9.54661 -8.87287 -8.82976 -8.42317 -7.68288 -6.04276 -4.07709 2.60795 2.89788 3.28802 3.30397 3.37475 3.42491 3.80315 4.43496 4.49150 4.57701 4.68256 4.85328 5.04328 5.11781 5.17420 5.22937 5.29777 5.30979 5.39363 5.50434 5.55126 5.62058 5.65490 5.70766 5.80347 5.95892 6.01479 6.14564 6.18205 6.24969 6.25752 6.35582 6.57977 6.94306 7.09608 7.32339 7.45883 7.54211 7.92553 8.09590 8.24228 8.40431 8.89208 9.05501 9.56735 11.03825 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020492 B = 0.004985 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.039295 B = 5615.266359 C = 5832.894159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.589 5.589 5 C 0.244 3.756 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.512 3.488 15 O -0.539 6.539 16 C -0.115 4.115 17 H 0.095 0.905 18 C -0.117 4.117 19 C 0.115 3.885 20 N -0.610 5.610 21 C 0.078 3.922 22 C 0.523 3.477 23 O -0.555 6.555 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -8.358 -15.949 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.320 5.320 5 C 0.125 3.875 6 C -0.559 4.559 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.298 3.702 15 O -0.417 6.417 16 C -0.137 4.137 17 H 0.113 0.887 18 C -0.155 4.155 19 C -0.008 4.008 20 N -0.344 5.344 21 C -0.065 4.065 22 C 0.312 3.688 23 O -0.433 6.433 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.685 -8.265 -15.521 17.665 hybrid contribution 0.503 0.773 0.449 1.025 sum 2.187 -7.492 -15.072 16.973 Atomic orbital electron populations 1.22150 0.95369 1.01847 1.02607 1.21078 0.94327 0.94098 0.87966 1.22199 1.01285 0.95823 1.02533 1.48340 1.45039 1.29818 1.08799 1.19278 0.95393 0.95675 0.77138 1.21434 1.10820 1.21625 1.02035 0.92323 1.24916 0.95538 0.97109 0.96509 1.69931 1.28612 1.43074 1.11796 0.86563 0.81571 0.81608 0.78103 1.20670 1.21179 1.19901 1.20008 0.79678 0.80902 0.89607 1.90675 1.58066 1.53482 1.39477 1.21494 0.98150 0.96293 0.97733 0.88705 1.21721 1.03777 0.94837 0.95167 1.21511 0.92639 0.92438 0.94201 1.47283 1.42147 1.13394 1.31536 1.21687 0.97319 0.99734 0.87714 1.20118 0.81955 0.81077 0.85658 1.90704 1.37426 1.57651 1.57543 1.21594 0.97246 1.00760 0.96567 0.91067 0.92250 0.92882 0.90690 0.92759 0.93150 0.89904 0.94665 0.93960 0.92797 0.89131 0.89833 0.90303 0.91547 0.92735 0.90376 0.91344 0.87391 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.09 37.16 0.34 -1.96 16 2 C 0.13 2.03 3.09 -67.93 -0.21 1.82 16 3 C -0.16 -2.57 8.58 37.15 0.32 -2.26 16 4 N -0.59 -11.70 2.39 -167.47 -0.40 -12.10 16 5 C 0.24 6.08 4.73 -5.19 -0.02 6.06 16 6 C -0.52 -14.09 7.85 -34.44 -0.27 -14.36 16 7 H 0.06 1.59 7.59 -52.49 -0.40 1.19 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 10 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.51 9.91 6.78 -10.99 -0.07 9.83 16 15 O -0.54 -12.74 15.79 5.56 0.09 -12.65 16 16 C -0.11 -1.60 1.76 -91.58 -0.16 -1.76 16 17 H 0.09 1.13 6.11 -51.93 -0.32 0.81 16 18 C -0.12 -1.37 4.71 -26.60 -0.13 -1.49 16 19 C 0.11 1.02 6.39 -4.48 -0.03 0.99 16 20 N -0.61 -6.88 3.21 -182.86 -0.59 -7.47 16 21 C 0.08 0.72 10.22 59.85 0.61 1.33 16 22 C 0.52 7.53 7.47 -11.88 -0.09 7.44 16 23 O -0.55 -9.79 16.21 5.55 0.09 -9.70 16 24 C -0.12 -1.76 5.34 -28.13 -0.15 -1.91 16 25 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.98 5.26 -51.93 -0.27 0.71 16 29 H 0.05 0.90 7.51 -51.93 -0.39 0.51 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 32 H 0.04 0.89 6.22 -51.93 -0.32 0.57 16 33 H 0.04 1.21 7.37 -51.93 -0.38 0.83 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.10 8.09 -51.93 -0.42 0.68 16 37 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.84 7.20 -51.94 -0.37 0.46 16 41 H 0.07 0.44 7.86 -51.93 -0.41 0.03 16 42 H 0.11 1.71 8.09 -51.92 -0.42 1.29 16 43 H 0.11 1.56 7.46 -51.93 -0.39 1.17 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -33.52 340.53 -6.80 -40.31 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.88 Total: -0.14 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 0.04 Total: 5.33 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.25 Total: -44.89 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.18 Total: -22.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.52 -6.80 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.368 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds