Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 N 1.46498 * 109.47162 * 120.00234 * 2 1 3 5 5 C 1.46499 * 120.00149 * 305.46970 * 4 2 1 6 6 C 1.50704 * 109.46891 * 269.99986 * 5 4 2 7 7 H 1.07995 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99708 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00087 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99808 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47449 * 59.99949 * 10 8 6 12 12 H 1.48503 * 109.47058 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47207 * 299.99635 * 10 8 6 14 14 C 1.34782 * 119.99832 * 125.46937 * 4 2 1 15 15 O 1.21279 * 119.99875 * 185.53225 * 14 4 2 16 16 C 1.50699 * 120.00224 * 5.53221 * 14 4 2 17 17 H 1.08999 * 109.66881 * 45.08746 * 16 14 4 18 18 C 1.53346 * 109.70345 * 165.60190 * 16 14 4 19 19 C 1.52741 * 108.81727 * 187.12496 * 18 16 14 20 20 N 1.45759 * 110.58877 * 309.60833 * 19 18 16 21 21 C 1.46497 * 117.94762 * 198.89707 * 20 19 18 22 22 C 1.33350 * 124.10524 * 18.61655 * 20 19 18 23 23 O 1.21277 * 118.24954 * 178.07931 * 22 20 19 24 24 C 1.50179 * 123.50811 * 358.05797 * 22 20 19 25 25 H 1.09007 * 109.46543 * 299.99775 * 1 2 3 26 26 H 1.08998 * 109.46745 * 59.99648 * 1 2 3 27 27 H 1.08996 * 109.47325 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47029 * 240.00066 * 2 1 3 29 29 H 1.08994 * 109.47330 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47076 * 300.00608 * 3 2 1 31 31 H 1.09000 * 109.46523 * 60.00192 * 3 2 1 32 32 H 1.08997 * 109.46704 * 30.00123 * 5 4 2 33 33 H 1.09002 * 109.46803 * 149.99778 * 5 4 2 34 34 H 0.96995 * 120.00164 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.60099 * 307.03795 * 18 16 14 36 36 H 1.08996 * 109.60176 * 67.36857 * 18 16 14 37 37 H 1.09005 * 109.39760 * 189.17419 * 19 18 16 38 38 H 1.08996 * 109.10873 * 69.86106 * 19 18 16 39 39 H 1.09000 * 109.47251 * 179.74439 * 21 20 19 40 40 H 1.08998 * 109.47412 * 59.73709 * 21 20 19 41 41 H 1.09002 * 109.46943 * 299.73866 * 21 20 19 42 42 H 1.08996 * 109.40570 * 137.71316 * 24 22 20 43 43 H 1.09005 * 109.40152 * 257.45157 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5685 -0.2639 2.5234 6 6 2.5052 0.7893 3.0567 7 1 3.3512 1.1085 2.4662 8 6 2.2826 1.3446 4.2989 9 7 1.2526 0.9556 5.0182 10 14 3.4433 2.6506 4.9597 11 1 3.4501 3.8174 4.0411 12 1 2.9873 3.0831 6.3051 13 1 4.8149 2.0899 5.0579 14 6 2.8816 -1.7187 1.0754 15 8 3.2080 -2.3546 2.0552 16 6 3.4411 -2.0781 -0.2769 17 1 3.7533 -1.1726 -0.7972 18 6 4.6423 -3.0160 -0.1068 19 6 5.3011 -3.2247 -1.4689 20 7 4.3076 -3.6021 -2.4664 21 6 4.7788 -4.2439 -3.6962 22 6 2.9961 -3.4047 -2.3274 23 8 2.2670 -3.7285 -3.2408 24 6 2.3737 -2.8033 -1.1001 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 0.5620 0.1481 2.4507 33 1 1.5627 -1.1202 3.1978 34 1 1.0963 1.3459 5.8922 35 1 5.3592 -2.5706 0.5830 36 1 4.3046 -3.9752 0.2855 37 1 6.0510 -4.0121 -1.3915 38 1 5.7864 -2.2984 -1.7763 39 1 3.9269 -4.4695 -4.3377 40 1 5.3008 -5.1677 -3.4470 41 1 5.4593 -3.5717 -4.2190 42 1 1.6010 -2.0940 -1.3965 43 1 1.9261 -3.5933 -0.4970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = -73.561335 kcal Electronic energy + Delta-G solvation = -23646.103279 eV Core-core repulsion = 20305.246210 eV Total energy + Delta-G solvation = -3340.857068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80344 -39.18223 -36.53522 -35.90401 -34.10228 -32.76047 -30.86410 -29.90311 -28.01694 -26.88750 -26.74674 -24.67163 -23.51237 -22.11163 -21.10207 -18.76014 -18.18183 -17.05752 -16.58703 -16.50269 -16.39545 -15.74980 -15.07436 -14.59267 -14.44240 -14.11796 -13.78801 -13.57200 -13.29339 -13.24983 -12.80320 -12.48395 -12.40022 -12.26593 -11.87601 -11.77601 -11.67235 -11.49704 -11.22352 -11.01937 -10.97294 -10.91862 -10.84657 -10.56279 -10.35397 -10.01377 -9.99215 -9.57546 -8.89025 -8.84686 -8.43231 -7.67746 -6.05083 -4.08901 2.54352 2.87935 3.28399 3.29955 3.34880 3.38206 3.79707 4.41385 4.44389 4.58077 4.68148 4.80484 5.08697 5.14251 5.17257 5.24543 5.27690 5.29344 5.36395 5.46959 5.55681 5.60290 5.63480 5.68240 5.79939 5.97308 6.02571 6.15776 6.18682 6.22297 6.26152 6.34136 6.59718 6.91813 7.10330 7.28742 7.46237 7.53973 7.91460 8.04226 8.23445 8.40551 8.87895 9.04617 9.55283 11.02979 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.004762 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.703170 B = 5879.057450 C = 6334.639144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.589 5.589 5 C 0.244 3.756 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.513 3.487 15 O -0.539 6.539 16 C -0.114 4.114 17 H 0.097 0.903 18 C -0.115 4.115 19 C 0.114 3.886 20 N -0.608 5.608 21 C 0.069 3.931 22 C 0.523 3.477 23 O -0.557 6.557 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 -5.307 -15.194 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 C -0.218 4.218 4 N -0.320 5.320 5 C 0.125 3.875 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.299 3.701 15 O -0.417 6.417 16 C -0.136 4.136 17 H 0.115 0.885 18 C -0.153 4.153 19 C -0.009 4.009 20 N -0.341 5.341 21 C -0.073 4.073 22 C 0.312 3.688 23 O -0.436 6.436 24 C -0.167 4.167 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.145 -5.748 -14.923 16.799 hybrid contribution 0.747 0.918 0.512 1.290 sum 5.892 -4.830 -14.411 16.301 Atomic orbital electron populations 1.22161 0.95219 1.02036 1.02688 1.21137 0.94494 0.94050 0.88006 1.22180 1.01100 0.95962 1.02531 1.48318 1.43899 1.30982 1.08848 1.19284 0.95211 0.95863 0.77164 1.21394 1.11413 1.21222 1.02037 0.92426 1.24921 0.95479 0.97110 0.96568 1.69918 1.28250 1.43051 1.12113 0.86615 0.81309 0.81745 0.78074 1.20291 1.21250 1.20275 1.20015 0.79855 0.80814 0.89445 1.90671 1.59609 1.51783 1.39636 1.21477 0.96181 0.99922 0.95979 0.88531 1.21666 0.97243 1.00886 0.95546 1.21451 0.90674 1.00832 0.87902 1.47236 1.06573 1.60442 1.19883 1.21759 1.01157 0.97123 0.87305 1.20099 0.81803 0.78004 0.88867 1.90685 1.59536 1.52384 1.41031 1.21782 0.98734 1.02032 0.94172 0.90965 0.92169 0.92736 0.90524 0.92960 0.93191 0.89913 0.94611 0.93933 0.92710 0.88727 0.90090 0.90282 0.91447 0.89086 0.92273 0.92260 0.87236 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.06 37.16 0.34 -2.06 16 2 C 0.13 2.01 2.65 -67.93 -0.18 1.83 16 3 C -0.16 -2.53 8.62 37.16 0.32 -2.21 16 4 N -0.59 -11.75 2.39 -167.47 -0.40 -12.15 16 5 C 0.24 6.08 4.78 -5.19 -0.02 6.05 16 6 C -0.52 -14.03 7.86 -34.44 -0.27 -14.30 16 7 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 9.93 6.89 -10.98 -0.08 9.86 16 15 O -0.54 -12.72 15.67 5.56 0.09 -12.63 16 16 C -0.11 -1.58 1.71 -91.56 -0.16 -1.74 16 17 H 0.10 1.23 7.33 -51.93 -0.38 0.85 16 18 C -0.12 -1.40 4.62 -26.69 -0.12 -1.52 16 19 C 0.11 1.05 6.40 -4.57 -0.03 1.03 16 20 N -0.61 -6.74 3.21 -182.97 -0.59 -7.32 16 21 C 0.07 0.62 10.47 59.85 0.63 1.25 16 22 C 0.52 7.12 7.47 -11.87 -0.09 7.03 16 23 O -0.56 -9.23 15.95 5.56 0.09 -9.15 16 24 C -0.13 -1.68 5.00 -28.10 -0.14 -1.82 16 25 H 0.07 1.21 6.51 -51.92 -0.34 0.87 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.03 4.03 -51.93 -0.21 0.82 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 32 H 0.04 0.91 6.16 -51.93 -0.32 0.59 16 33 H 0.04 1.22 7.35 -51.93 -0.38 0.84 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.09 1.20 8.12 -51.93 -0.42 0.77 16 36 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 37 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.97 6.59 -51.93 -0.34 0.63 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 1.39 6.00 -51.93 -0.31 1.08 16 43 H 0.11 1.44 8.09 -51.93 -0.42 1.02 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -33.02 338.57 -6.72 -39.74 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.82 Total: 0.35 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 0.10 Total: 5.00 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.25 Total: -44.69 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.02 -6.72 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.824 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds