Wall clock time and date at job start Tue Mar 31 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47140 * 2 1 4 4 N 1.46500 * 109.47236 * 120.00251 * 2 1 3 5 5 C 1.46496 * 120.00021 * 300.00139 * 4 2 1 6 6 C 1.50706 * 109.46603 * 269.99648 * 5 4 2 7 7 H 1.07997 * 119.99846 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99898 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99987 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99802 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46972 * 89.99965 * 10 8 6 12 12 H 1.48494 * 109.46896 * 210.00003 * 10 8 6 13 13 H 1.48500 * 109.47132 * 330.00182 * 10 8 6 14 14 C 1.34781 * 119.99836 * 119.99525 * 4 2 1 15 15 O 1.21281 * 120.00016 * 180.02562 * 14 4 2 16 16 C 1.50703 * 119.99994 * 0.02562 * 14 4 2 17 17 N 1.46496 * 109.46871 * 180.02562 * 16 14 4 18 18 C 1.46504 * 119.99884 * 269.99501 * 17 16 14 19 19 C 1.34777 * 120.00258 * 90.00155 * 17 16 14 20 20 O 1.21279 * 120.00166 * 359.97438 * 19 17 16 21 21 C 1.50706 * 119.99762 * 179.97438 * 19 17 16 22 22 C 1.53001 * 117.49756 * 248.61806 * 21 19 17 23 23 C 1.52999 * 59.99986 * 252.51526 * 22 21 19 24 24 H 1.09012 * 109.46845 * 299.99950 * 1 2 3 25 25 H 1.08998 * 109.47304 * 59.99491 * 1 2 3 26 26 H 1.08998 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46761 * 240.00229 * 2 1 3 28 28 H 1.09009 * 109.47079 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47231 * 300.00062 * 3 2 1 30 30 H 1.08998 * 109.47107 * 60.00441 * 3 2 1 31 31 H 1.08995 * 109.47147 * 29.99583 * 5 4 2 32 32 H 1.09004 * 109.47304 * 150.00103 * 5 4 2 33 33 H 0.96999 * 119.99767 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47308 * 59.99468 * 16 14 4 35 35 H 1.09000 * 109.46976 * 299.99613 * 16 14 4 36 36 H 1.08999 * 109.47441 * 270.00307 * 18 17 16 37 37 H 1.09005 * 109.47121 * 30.00515 * 18 17 16 38 38 H 1.08997 * 109.47160 * 150.00168 * 18 17 16 39 39 H 1.08996 * 115.55128 * 34.33271 * 21 19 17 40 40 H 1.09004 * 117.49834 * 0.02562 * 22 21 19 41 41 H 1.08997 * 117.49999 * 145.02096 * 22 21 19 42 42 H 1.09004 * 117.50109 * 252.51157 * 23 22 21 43 43 H 1.08998 * 117.52032 * 107.48340 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6644 -0.1902 2.5267 6 6 2.7033 0.8017 2.9829 7 1 3.5428 1.0361 2.3453 8 6 2.5819 1.4098 4.2144 9 7 3.4882 2.2758 4.6123 10 14 1.1293 1.0048 5.3169 11 1 1.4784 -0.1413 6.1944 12 1 0.7986 2.1861 6.1536 13 1 -0.0435 0.6475 4.4791 14 6 2.7932 -1.7865 1.0724 15 8 3.1971 -2.3586 2.0626 16 6 3.1576 -2.3010 -0.2964 17 7 3.9991 -3.4926 -0.1621 18 6 5.4562 -3.3564 -0.0942 19 6 3.4330 -4.7142 -0.1010 20 8 2.2267 -4.8269 -0.1568 21 6 4.2988 -5.9399 0.0367 22 6 4.3676 -6.8940 -1.1575 23 6 3.5962 -7.2975 0.1007 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2972 2.4843 32 1 1.6238 -1.0228 3.2291 33 1 3.4025 2.7039 5.4785 34 1 3.7027 -1.5302 -0.8411 35 1 2.2494 -2.5578 -0.8417 36 1 5.8725 -3.3992 -1.1007 37 1 5.7109 -2.4006 0.3639 38 1 5.8695 -4.1679 0.5047 39 1 5.2028 -5.8125 0.6322 40 1 3.7869 -6.6348 -2.0428 41 1 5.3170 -7.3943 -1.3479 42 1 4.0381 -8.0634 0.7381 43 1 2.5077 -7.3041 0.0437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609582143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:16 Heat of formation + Delta-G solvation = -34.328365 kcal Electronic energy + Delta-G solvation = -23263.153878 eV Core-core repulsion = 19923.998079 eV Total energy + Delta-G solvation = -3339.155799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26526 -38.98841 -36.48189 -35.90296 -35.15807 -32.74284 -30.99032 -29.70240 -27.44305 -26.76101 -26.46811 -23.87005 -22.57663 -22.13555 -21.31162 -19.10499 -18.11805 -17.47213 -17.03032 -16.85227 -16.15000 -15.31476 -14.99736 -14.72677 -14.34554 -14.14083 -13.61928 -13.51586 -13.16903 -12.93261 -12.74255 -12.64746 -12.47813 -12.18976 -11.87309 -11.76858 -11.67994 -11.64358 -11.35918 -10.93373 -10.86022 -10.71866 -10.59705 -10.51235 -10.34472 -10.07858 -9.75635 -9.49136 -9.35751 -8.56135 -8.40028 -7.68429 -6.07006 -4.03993 2.51115 2.95065 3.30540 3.35307 3.36631 3.39799 3.72307 3.90907 4.41756 4.44264 4.64593 4.75914 4.94376 4.99399 5.15574 5.22795 5.27304 5.27827 5.39934 5.43709 5.51653 5.53426 5.61370 5.64772 5.74583 5.85493 5.96655 5.99901 6.10113 6.22655 6.32943 6.41388 6.53314 6.80555 6.97679 7.02002 7.39056 7.40250 7.64528 8.21423 8.31552 8.49746 8.94985 9.00977 9.54378 11.06117 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.004745 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.878252 B = 5899.000927 C = 6323.041570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.156 4.156 4 N -0.587 5.587 5 C 0.216 3.784 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.899 5.899 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.493 3.507 15 O -0.532 6.532 16 C 0.096 3.904 17 N -0.593 5.593 18 C 0.083 3.917 19 C 0.549 3.451 20 O -0.541 6.541 21 C -0.190 4.190 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -11.564 -14.742 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 C -0.214 4.214 4 N -0.320 5.320 5 C 0.095 3.905 6 C -0.558 4.558 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.538 5.538 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.278 3.722 15 O -0.409 6.409 16 C -0.031 4.031 17 N -0.325 5.325 18 C -0.060 4.060 19 C 0.338 3.662 20 O -0.418 6.418 21 C -0.211 4.211 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.976 -11.784 -14.079 18.386 hybrid contribution -0.498 0.192 0.850 1.003 sum 0.478 -11.592 -13.229 17.596 Atomic orbital electron populations 1.22175 0.95548 1.01981 1.02453 1.21040 0.94210 0.94386 0.87493 1.22135 1.01647 0.95221 1.02392 1.48020 1.49488 1.26518 1.07970 1.19612 0.96319 0.95057 0.79494 1.21325 1.09193 1.22385 1.02910 0.90583 1.24835 0.96034 0.94771 0.97359 1.69888 1.34649 1.28449 1.20779 0.86911 0.83565 0.78184 0.81419 1.20033 1.21139 1.19098 1.20746 0.79366 0.80904 0.91154 1.90663 1.53069 1.57794 1.39363 1.21427 0.97260 0.87896 0.96487 1.47281 1.07346 1.05187 1.72677 1.21826 0.78979 1.03902 1.01284 1.19588 0.87843 0.83587 0.75194 1.90670 1.14777 1.86253 1.50145 1.22212 1.02746 0.90414 1.05757 1.22912 1.02707 1.01052 0.92351 1.22945 1.00812 0.94931 0.99938 0.91574 0.91954 0.92705 0.90706 0.92473 0.93154 0.90007 0.95106 0.94897 0.92668 0.87909 0.87558 0.92465 0.90588 0.90798 0.85604 0.88386 0.87890 0.87973 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.17 37.16 0.34 -2.02 16 2 C 0.13 2.13 3.17 -67.93 -0.22 1.92 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.23 16 4 N -0.59 -12.23 2.39 -167.47 -0.40 -12.63 16 5 C 0.22 5.33 3.66 -5.19 -0.02 5.31 16 6 C -0.52 -14.61 8.38 -34.44 -0.29 -14.90 16 7 H 0.08 2.31 7.87 -52.49 -0.41 1.90 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 9 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 10 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 11 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.49 10.39 7.74 -10.98 -0.09 10.31 16 15 O -0.53 -13.57 16.01 5.56 0.09 -13.48 16 16 C 0.10 1.50 4.20 -5.19 -0.02 1.48 16 17 N -0.59 -8.88 2.36 -182.95 -0.43 -9.31 16 18 C 0.08 0.94 10.27 59.85 0.61 1.56 16 19 C 0.55 8.75 7.46 -10.98 -0.08 8.67 16 20 O -0.54 -10.50 15.84 5.56 0.09 -10.41 16 21 C -0.19 -2.24 5.29 -91.77 -0.49 -2.72 16 22 C -0.15 -1.36 10.23 -26.73 -0.27 -1.64 16 23 C -0.15 -1.56 10.04 -26.73 -0.27 -1.83 16 24 H 0.07 1.06 6.66 -51.92 -0.35 0.71 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.98 5.77 -51.93 -0.30 0.68 16 28 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 31 H 0.03 0.73 5.48 -51.93 -0.28 0.45 16 32 H 0.03 0.90 6.85 -51.93 -0.36 0.54 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.10 1.29 7.72 -51.93 -0.40 0.89 16 35 H 0.11 1.60 7.06 -51.93 -0.37 1.23 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.07 0.75 6.00 -51.93 -0.31 0.44 16 39 H 0.13 1.28 6.44 -51.93 -0.33 0.95 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -36.31 348.29 -6.71 -43.01 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.84 Total: 1.21 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.57 Total: 5.88 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.06 Total: -48.64 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.18 Total: -23.89 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.31 -6.71 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609582143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.685 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds