Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 N 1.46498 * 109.47058 * 119.99637 * 2 1 3 5 5 C 1.46504 * 120.00059 * 295.07772 * 4 2 1 6 6 C 1.50696 * 109.47177 * 90.00079 * 5 4 2 7 7 H 1.08000 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99974 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00007 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47386 * 59.99469 * 10 8 6 12 12 H 1.48501 * 109.46851 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46907 * 299.99429 * 10 8 6 14 14 C 1.34771 * 119.99827 * 115.07326 * 4 2 1 15 15 O 1.21286 * 120.00298 * 186.67960 * 14 4 2 16 16 C 1.50701 * 120.00268 * 6.68232 * 14 4 2 17 17 H 1.08999 * 109.60581 * 277.01620 * 16 14 4 18 18 C 1.52990 * 109.60701 * 156.68591 * 16 14 4 19 19 C 1.51774 * 110.87989 * 326.71141 * 18 16 14 20 20 C 1.51798 * 113.81010 * 292.99885 * 19 18 16 21 21 C 1.53063 * 110.74459 * 66.81502 * 20 19 18 22 22 C 1.51416 * 108.49366 * 275.08092 * 21 20 19 23 23 O 1.21288 * 119.89365 * 251.24253 * 22 21 20 24 24 N 1.33630 * 120.28662 * 71.35215 * 22 21 20 25 25 H 1.08999 * 109.47466 * 300.00103 * 1 2 3 26 26 H 1.08998 * 109.47240 * 60.00021 * 1 2 3 27 27 H 1.09000 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47240 * 239.99782 * 2 1 3 29 29 H 1.09011 * 109.46731 * 183.83307 * 3 2 1 30 30 H 1.08992 * 109.47273 * 303.83117 * 3 2 1 31 31 H 1.08997 * 109.47575 * 63.83864 * 3 2 1 32 32 H 1.09000 * 109.47391 * 329.99357 * 5 4 2 33 33 H 1.09009 * 109.46530 * 209.99591 * 5 4 2 34 34 H 0.96999 * 119.99935 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.19111 * 87.07077 * 18 16 14 36 36 H 1.09001 * 109.19517 * 206.39355 * 18 16 14 37 37 H 1.09000 * 108.62094 * 54.11816 * 19 18 16 38 38 H 1.09002 * 108.61489 * 171.88602 * 19 18 16 39 39 H 1.09002 * 109.21905 * 187.13914 * 20 19 18 40 40 H 1.08991 * 109.22364 * 306.53371 * 20 19 18 41 41 H 1.09002 * 109.63472 * 34.78048 * 21 20 19 42 42 H 1.09001 * 109.63406 * 155.37384 * 21 20 19 43 43 H 0.96992 * 119.97290 * 180.31488 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.7555 -0.1302 2.5241 6 6 0.4521 -0.6740 3.0498 7 1 -0.1228 -1.3680 2.4546 8 6 -0.0065 -0.2857 4.2908 9 7 0.6938 0.5590 5.0158 10 14 -1.6218 -0.9604 4.9428 11 1 -1.5378 -2.4398 5.0382 12 1 -1.8882 -0.3923 6.2887 13 1 -2.7232 -0.5856 4.0200 14 6 2.7092 -1.8413 1.0751 15 8 3.0086 -2.4760 2.0643 16 6 3.1100 -2.3396 -0.2895 17 1 2.2774 -2.8789 -0.7410 18 6 4.3165 -3.2716 -0.1619 19 6 5.2200 -2.8340 0.9764 20 6 5.9081 -1.5025 0.7355 21 6 4.8881 -0.3616 0.7109 22 6 4.3147 -0.2599 -0.6868 23 8 4.6123 0.6783 -1.3954 24 7 3.4801 -1.1986 -1.1428 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1279 1.4433 -0.0687 30 1 1.6216 1.9758 -0.8536 31 1 1.7339 1.9362 0.9223 32 1 1.6944 0.9559 2.4546 33 1 2.5639 -0.4061 3.2013 34 1 0.3714 0.8320 5.8890 35 1 3.9668 -4.2864 0.0279 36 1 4.8818 -3.2558 -1.0937 37 1 4.6229 -2.7575 1.8851 38 1 5.9830 -3.5974 1.1282 39 1 6.6294 -1.3220 1.5325 40 1 6.4307 -1.5364 -0.2204 41 1 4.0877 -0.5706 1.4207 42 1 5.3796 0.5749 0.9743 43 1 3.1191 -1.1313 -2.0406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619110587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = -33.593739 kcal Electronic energy + Delta-G solvation = -25130.711377 eV Core-core repulsion = 21791.587433 eV Total energy + Delta-G solvation = -3339.123943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54129 -38.57428 -36.72477 -35.67632 -33.87726 -32.75231 -31.17560 -30.73958 -27.95754 -26.74827 -26.41474 -24.29348 -22.96198 -21.66568 -20.55693 -19.85405 -18.38083 -17.52171 -17.07234 -16.45168 -15.87224 -15.27205 -14.91328 -14.84894 -14.33324 -14.05167 -13.80368 -13.53639 -13.19775 -12.89792 -12.57375 -12.41220 -12.34268 -12.20682 -11.70485 -11.48884 -11.44338 -11.27590 -11.03899 -10.94888 -10.69682 -10.65122 -10.57918 -10.46058 -10.31648 -10.07798 -9.64746 -9.56999 -9.10400 -8.44801 -8.38471 -7.67064 -6.06553 -4.09901 2.75313 2.90119 3.29615 3.34629 3.36703 3.42993 3.70673 4.41813 4.61258 4.69817 4.84138 4.97729 5.12437 5.26220 5.28315 5.36354 5.39770 5.62530 5.65625 5.75026 5.78972 5.88212 6.08142 6.10051 6.14138 6.21973 6.25788 6.30954 6.32929 6.38100 6.63840 6.77649 6.83675 6.94256 7.02528 7.20783 7.37169 7.49766 7.88865 8.20076 8.28932 8.30111 8.78802 8.95992 9.53916 11.01521 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.006724 C = 0.006087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.794724 B = 4163.492860 C = 4598.886559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.106 3.894 3 C -0.173 4.173 4 N -0.585 5.585 5 C 0.243 3.757 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.499 3.501 15 O -0.519 6.519 16 C 0.116 3.884 17 H 0.116 0.884 18 C -0.109 4.109 19 C -0.177 4.177 20 C -0.103 4.103 21 C -0.168 4.168 22 C 0.534 3.466 23 O -0.550 6.550 24 N -0.715 5.715 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.330 -4.520 -12.087 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 C -0.231 4.231 4 N -0.316 5.316 5 C 0.124 3.876 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.286 3.714 15 O -0.397 6.397 16 C 0.008 3.992 17 H 0.134 0.866 18 C -0.148 4.148 19 C -0.214 4.214 20 C -0.141 4.141 21 C -0.208 4.208 22 C 0.323 3.677 23 O -0.429 6.429 24 N -0.372 5.372 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.712 -4.246 -11.532 13.552 hybrid contribution -1.239 -0.307 0.006 1.277 sum 4.473 -4.553 -11.526 13.175 Atomic orbital electron populations 1.22166 0.95156 1.01921 1.02359 1.21782 0.94956 0.93904 0.89188 1.22361 1.02101 0.96151 1.02456 1.48509 1.51654 1.22142 1.09255 1.19323 0.97210 0.94159 0.76874 1.21339 1.05485 1.26887 1.02033 0.92363 1.24920 0.97469 0.95140 0.96578 1.69911 1.38395 1.33044 1.12004 0.86606 0.83697 0.79380 0.78011 1.20256 1.21275 1.20348 1.20120 0.79454 0.81782 0.90035 1.90447 1.54638 1.55654 1.39008 1.21640 0.99286 0.87702 0.90611 0.86613 1.21455 0.94999 0.98634 0.99672 1.22066 0.99977 0.95873 1.03452 1.21133 0.97174 0.93987 1.01799 1.22542 1.01883 1.01693 0.94705 1.20523 0.76894 0.80707 0.89576 1.90723 1.60216 1.32455 1.59469 1.46251 1.47877 1.24927 1.18103 0.90187 0.93324 0.93096 0.88249 0.91700 0.92417 0.91379 0.94434 0.94161 0.92703 0.90177 0.91416 0.84975 0.92408 0.90928 0.92733 0.86461 0.88762 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.61 37.16 0.32 -2.26 16 2 C 0.11 1.73 2.17 -67.93 -0.15 1.58 16 3 C -0.17 -2.87 8.79 37.16 0.33 -2.54 16 4 N -0.58 -11.24 1.39 -167.47 -0.23 -11.47 16 5 C 0.24 5.89 4.28 -5.19 -0.02 5.86 16 6 C -0.52 -13.77 7.85 -34.44 -0.27 -14.05 16 7 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.50 9.00 3.93 -10.99 -0.04 8.95 16 15 O -0.52 -11.06 12.63 5.55 0.07 -10.99 16 16 C 0.12 1.49 3.12 -68.70 -0.21 1.28 16 17 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.11 -1.29 5.36 -27.36 -0.15 -1.43 16 19 C -0.18 -2.42 5.15 -27.96 -0.14 -2.56 16 20 C -0.10 -1.39 5.67 -27.31 -0.15 -1.55 16 21 C -0.17 -2.65 5.17 -27.50 -0.14 -2.79 16 22 C 0.53 8.19 3.60 -11.14 -0.04 8.15 16 23 O -0.55 -9.85 16.72 5.55 0.09 -9.76 16 24 N -0.72 -8.88 2.74 -54.50 -0.15 -9.03 16 25 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.10 1.37 3.89 -59.44 -0.23 1.14 16 29 H 0.06 1.13 4.34 -51.92 -0.23 0.90 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.25 6.35 -51.93 -0.33 0.92 16 32 H 0.04 0.95 6.11 -51.93 -0.32 0.63 16 33 H 0.04 1.10 7.47 -51.92 -0.39 0.71 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 37 H 0.13 2.28 4.23 -55.40 -0.23 2.04 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.69 7.86 -51.93 -0.41 0.29 16 41 H 0.12 2.13 3.32 -51.93 -0.17 1.96 16 42 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 43 H 0.40 4.07 8.39 -40.82 -0.34 3.72 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -30.80 314.73 -6.88 -37.68 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.34 Total: 7.28 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.78 Total: 0.21 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.35 Total: -45.45 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.16 Total: -20.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.80 -6.88 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619110587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.088 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds