Wall clock time and date at job start Tue Mar 31 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.46966 * 2 1 4 4 C 1.53003 * 109.47113 * 120.00115 * 2 1 3 5 5 N 1.46501 * 109.47282 * 64.99764 * 4 2 1 6 6 C 1.46495 * 119.99971 * 270.00096 * 5 4 2 7 7 C 1.50695 * 109.47248 * 269.99965 * 6 5 4 8 8 H 1.08002 * 120.00237 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00210 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99448 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00229 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47057 * 59.99340 * 11 9 7 13 13 H 1.48500 * 109.47219 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47062 * 299.99600 * 11 9 7 15 15 C 1.34773 * 119.99862 * 89.99946 * 5 4 2 16 16 O 1.21280 * 120.00278 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99954 * 0.02562 * 15 5 4 18 18 N 1.46498 * 109.47501 * 179.97438 * 17 15 5 19 19 C 1.46768 * 124.34879 * 89.99466 * 18 17 15 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02709 * 18 17 15 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 1.08999 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47357 * 299.99916 * 1 2 3 26 26 H 1.09006 * 109.47100 * 60.00391 * 1 2 3 27 27 H 1.08998 * 109.47357 * 240.00084 * 2 1 3 28 28 H 1.09001 * 109.46924 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47465 * 299.99832 * 3 2 1 30 30 H 1.09003 * 109.47728 * 60.00389 * 3 2 1 31 31 H 1.09009 * 109.46733 * 305.00115 * 4 2 1 32 32 H 1.08998 * 109.46934 * 185.00140 * 4 2 1 33 33 H 1.08997 * 109.47379 * 30.00399 * 6 5 4 34 34 H 1.09003 * 109.47056 * 149.99683 * 6 5 4 35 35 H 0.97008 * 119.99487 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.47506 * 59.99693 * 17 15 5 37 37 H 1.08998 * 109.47494 * 299.99513 * 17 15 5 38 38 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 39 39 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 40 40 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 41 41 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 42 42 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 43 43 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1329 1.1906 6 6 0.3745 -2.5659 1.7613 7 6 0.5716 -2.9408 3.2075 8 1 1.5507 -2.8637 3.6568 9 6 -0.4981 -3.3821 3.9573 10 7 -1.6905 -3.4754 3.4102 11 14 -0.2541 -3.8461 5.7502 12 1 0.2496 -2.6687 6.5020 13 1 -1.5494 -4.2852 6.3286 14 1 0.7315 -4.9528 5.8453 15 6 2.4714 -3.0331 0.6116 16 8 2.1508 -4.2017 0.5634 17 6 3.7862 -2.5876 0.0250 18 7 4.4861 -3.7443 -0.5393 19 6 4.3403 -4.2052 -1.9251 20 6 4.8882 -5.6495 -1.9410 21 6 5.8700 -5.6274 -0.7465 22 6 5.3455 -4.5229 0.1444 23 8 5.6540 -4.3621 1.3063 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2951 33 1 -0.3485 -1.7532 1.6918 34 1 0.0042 -3.4297 1.2092 35 1 -2.4432 -3.7856 3.9378 36 1 4.3991 -2.1383 0.8064 37 1 3.6038 -1.8543 -0.7604 38 1 4.9225 -3.5735 -2.5959 39 1 3.2901 -4.1970 -2.2168 40 1 4.0889 -6.3718 -1.7756 41 1 5.4131 -5.8573 -2.8734 42 1 5.8528 -6.5821 -0.2209 43 1 6.8794 -5.3962 -1.0865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706372559.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:17 Heat of formation + Delta-G solvation = -75.598046 kcal Electronic energy + Delta-G solvation = -23375.352182 eV Core-core repulsion = 20034.406795 eV Total energy + Delta-G solvation = -3340.945387 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34388 -38.87185 -36.41833 -36.08918 -33.57891 -32.74725 -32.19616 -28.56019 -27.49334 -26.86714 -26.65474 -25.31802 -22.73157 -21.87060 -20.28914 -19.63238 -18.34156 -16.95230 -16.61069 -16.44780 -15.98137 -15.28632 -15.24431 -14.51631 -14.46050 -13.92683 -13.65989 -13.56258 -13.35493 -13.18204 -12.84399 -12.51128 -12.37144 -12.17493 -12.08680 -11.68483 -11.54936 -11.43927 -11.33848 -11.03174 -10.97715 -10.89723 -10.69108 -10.48448 -10.26737 -10.08935 -9.63913 -9.57547 -9.33673 -8.38729 -8.33950 -7.62304 -6.00789 -4.04465 2.71103 3.09553 3.35582 3.37932 3.39431 3.46380 4.01247 4.39490 4.47894 4.49445 4.80053 4.94641 5.04759 5.09305 5.13661 5.25840 5.33519 5.39471 5.41319 5.48909 5.55037 5.68870 5.68986 5.78310 5.80465 5.85504 5.99006 6.08863 6.13545 6.16957 6.28154 6.48307 6.57129 6.67687 7.10724 7.24328 7.45263 7.57855 7.96166 8.28413 8.31704 8.44181 8.93736 9.10413 9.60354 11.07087 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.006166 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.104848 B = 4539.697437 C = 5983.198690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.244 3.756 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.488 3.512 16 O -0.532 6.532 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.106 3.894 20 C -0.130 4.130 21 C -0.151 4.151 22 C 0.520 3.480 23 O -0.530 6.530 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.468 5.375 -14.012 18.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.325 5.325 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.273 3.727 16 O -0.408 6.408 17 C -0.019 4.019 18 N -0.337 5.337 19 C -0.018 4.018 20 C -0.168 4.168 21 C -0.192 4.192 22 C 0.308 3.692 23 O -0.406 6.406 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.208 4.839 -13.332 18.077 hybrid contribution -0.104 -0.153 1.055 1.071 sum 11.104 4.686 -12.278 17.205 Atomic orbital electron populations 1.21927 0.94517 1.03106 1.01024 1.21589 0.97232 0.95829 0.98645 1.21785 1.00554 0.95961 1.01869 1.21587 0.98976 0.82443 0.98191 1.48215 1.21810 1.06229 1.56259 1.19381 0.78567 0.96291 0.93219 1.21436 0.95065 1.44321 0.95597 0.92591 1.24907 0.95042 0.95390 0.98665 1.69923 0.99789 1.47170 1.36681 0.86586 0.77296 0.79070 0.84673 1.20231 1.21189 1.20191 1.20753 0.85792 0.86613 0.79588 1.90665 1.74661 1.17301 1.58188 1.21340 0.93132 0.87679 0.99779 1.47842 1.43708 1.29914 1.12203 1.22044 1.02237 0.95072 0.82398 1.22568 0.99216 0.96604 0.98362 1.22277 1.00401 0.99437 0.97043 1.20938 0.78422 0.82945 0.86898 1.90730 1.61193 1.72671 1.15982 0.91260 0.92439 0.93621 0.91757 0.92889 0.92807 0.92404 0.89710 0.91792 0.94091 0.94221 0.92752 0.87748 0.88170 0.91234 0.90251 0.89669 0.89383 0.88083 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.18 37.16 0.30 -1.88 16 2 C -0.11 -1.48 3.12 -90.62 -0.28 -1.76 16 3 C -0.14 -1.47 9.19 37.15 0.34 -1.13 16 4 C 0.11 1.80 4.70 -4.04 -0.02 1.78 16 5 N -0.59 -12.49 2.28 -175.06 -0.40 -12.89 16 6 C 0.24 6.37 4.23 -5.20 -0.02 6.34 16 7 C -0.53 -15.30 9.39 -34.44 -0.32 -15.63 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 11 Si 0.90 22.67 29.54 -169.99 -5.02 17.65 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.49 10.35 7.74 -10.99 -0.09 10.26 16 16 O -0.53 -13.74 16.01 5.56 0.09 -13.66 16 17 C 0.11 1.67 4.97 -5.19 -0.03 1.65 16 18 N -0.60 -9.14 2.43 -173.72 -0.42 -9.57 16 19 C 0.11 1.14 7.34 -3.12 -0.02 1.11 16 20 C -0.13 -1.20 7.18 -25.10 -0.18 -1.38 16 21 C -0.15 -1.70 6.86 -26.74 -0.18 -1.88 16 22 C 0.52 8.74 8.03 -10.77 -0.09 8.65 16 23 O -0.53 -11.36 17.60 5.55 0.10 -11.26 16 24 H 0.07 1.23 5.89 -51.93 -0.31 0.92 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.45 8.07 -51.92 -0.42 1.03 16 32 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 33 H 0.04 1.05 5.98 -51.93 -0.31 0.74 16 34 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.10 1.63 7.19 -51.93 -0.37 1.26 16 37 H 0.10 1.19 7.26 -51.93 -0.38 0.81 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -37.04 350.11 -7.41 -44.45 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.08 Total: -1.64 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.68 Total: 7.85 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.08 Total: -48.66 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.19 Total: -24.92 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.04 -7.41 -44.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706372559.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.149 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds