Wall clock time and date at job start Tue Mar 31 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46851 * 2 1 4 4 C 1.52999 * 109.47397 * 119.99441 * 2 1 3 5 5 N 1.46500 * 109.47383 * 174.00032 * 4 2 1 6 6 C 1.46501 * 120.00318 * 276.37684 * 5 4 2 7 7 C 1.50703 * 109.46766 * 269.99540 * 6 5 4 8 8 H 1.08000 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00103 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99778 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00110 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47320 * 90.00105 * 11 9 7 13 13 H 1.48501 * 109.47287 * 210.00498 * 11 9 7 14 14 H 1.48500 * 109.47225 * 330.00097 * 11 9 7 15 15 C 1.34777 * 119.99894 * 96.36802 * 5 4 2 16 16 O 1.21281 * 120.00336 * 185.25095 * 15 5 4 17 17 C 1.50705 * 119.99972 * 5.25314 * 15 5 4 18 18 H 1.09009 * 109.12768 * 325.95793 * 17 15 5 19 19 C 1.52916 * 109.30278 * 85.43634 * 17 15 5 20 20 C 1.53340 * 108.81441 * 170.98555 * 19 17 15 21 21 C 1.53031 * 108.43639 * 292.69778 * 20 19 17 22 22 C 1.50183 * 110.00312 * 48.65877 * 21 20 19 23 23 O 1.21280 * 118.24975 * 162.55275 * 22 21 20 24 24 N 1.33351 * 123.50651 * 342.53294 * 22 21 20 25 25 H 1.09001 * 109.47205 * 299.99853 * 1 2 3 26 26 H 1.08993 * 109.47238 * 60.00344 * 1 2 3 27 27 H 1.09002 * 109.46508 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47205 * 240.00147 * 2 1 3 29 29 H 1.09000 * 109.46759 * 176.29646 * 3 2 1 30 30 H 1.09004 * 109.46802 * 296.29633 * 3 2 1 31 31 H 1.09001 * 109.47303 * 56.29204 * 3 2 1 32 32 H 1.09002 * 109.46802 * 54.00745 * 4 2 1 33 33 H 1.08994 * 109.47231 * 294.00519 * 4 2 1 34 34 H 1.08994 * 109.47091 * 29.99103 * 6 5 4 35 35 H 1.08996 * 109.47097 * 149.99707 * 6 5 4 36 36 H 0.96995 * 120.00012 * 179.97438 * 10 9 7 37 37 H 1.09006 * 109.60216 * 290.82782 * 19 17 15 38 38 H 1.08999 * 109.59921 * 51.14307 * 19 17 15 39 39 H 1.09005 * 109.67209 * 52.28264 * 20 19 17 40 40 H 1.08998 * 109.67996 * 172.82034 * 20 19 17 41 41 H 1.08994 * 109.25656 * 288.55383 * 21 20 19 42 42 H 1.08999 * 109.43815 * 168.87297 * 21 20 19 43 43 H 0.96996 * 117.95073 * 182.22575 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.4979 -0.8474 1.1793 6 6 4.1024 -1.9524 0.4311 7 6 4.2967 -3.1327 1.3477 8 1 3.9992 -3.0665 2.3838 9 6 4.8532 -4.2975 0.8634 10 7 5.2151 -4.3782 -0.3985 11 14 5.0933 -5.7607 1.9993 12 1 3.8815 -6.6184 1.9647 13 1 6.2699 -6.5479 1.5507 14 1 5.3195 -5.2792 3.3858 15 6 4.2830 0.0531 1.8031 16 8 5.4873 0.0050 1.6673 17 6 3.6646 1.1199 2.6696 18 1 2.7041 1.4125 2.2450 19 6 3.4465 0.5641 4.0774 20 6 3.0317 1.7133 5.0040 21 6 4.2205 2.6647 5.1572 22 6 4.7911 2.9953 3.8079 23 8 5.5129 3.9652 3.7120 24 7 4.5468 2.2793 2.7098 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1279 1.4433 0.0664 30 1 1.7318 1.9369 -0.9214 31 1 1.6234 1.9753 0.8549 32 1 1.5918 -1.7131 1.3046 33 1 1.7671 -0.1490 2.1359 34 1 3.4464 -2.2356 -0.3920 35 1 5.0677 -1.6375 0.0346 36 1 5.6069 -5.1975 -0.7391 37 1 2.6597 -0.1900 4.0551 38 1 4.3715 0.1167 4.4412 39 1 2.1889 2.2500 4.5682 40 1 2.7496 1.3153 5.9787 41 1 4.9870 2.1868 5.7672 42 1 3.8906 3.5817 5.6454 43 1 4.9840 2.5466 1.8862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709675584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:07 Heat of formation + Delta-G solvation = -89.784586 kcal Electronic energy + Delta-G solvation = -23713.068451 eV Core-core repulsion = 20371.507890 eV Total energy + Delta-G solvation = -3341.560561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66861 -39.04082 -36.52505 -36.08923 -33.82960 -32.95409 -32.38445 -30.08833 -27.65034 -27.16612 -25.91172 -24.91281 -22.90366 -22.58811 -20.35075 -19.19660 -18.85551 -17.08773 -16.96038 -16.51311 -16.12962 -15.41506 -15.00755 -14.70561 -14.52894 -14.18914 -14.02566 -13.86671 -13.67964 -13.37470 -13.03133 -12.56807 -12.30565 -12.27978 -11.87446 -11.76078 -11.59613 -11.32273 -11.17768 -11.09626 -11.01375 -10.99015 -10.82993 -10.62582 -10.50880 -10.20575 -9.87964 -9.69504 -9.38154 -8.67852 -8.49998 -7.77159 -6.11031 -4.16403 2.69063 3.01240 3.24968 3.31946 3.33634 3.39847 3.80638 4.37603 4.52874 4.58689 4.65479 4.70516 4.91516 4.99574 5.03249 5.12572 5.23486 5.29778 5.33432 5.49424 5.59087 5.62618 5.65335 5.71528 5.73551 5.77559 5.86216 5.96975 6.06160 6.10687 6.18663 6.34490 6.45701 6.80545 6.94787 7.35619 7.38122 7.44870 7.84598 8.14883 8.22222 8.30536 8.77831 8.93219 9.48969 10.97050 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.005868 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.753749 B = 4770.643254 C = 5734.424239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.497 3.503 16 O -0.530 6.530 17 C 0.112 3.888 18 H 0.100 0.900 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.136 4.136 22 C 0.524 3.476 23 O -0.564 6.564 24 N -0.695 5.695 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 10.298 6.574 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.207 4.207 4 C -0.014 4.014 5 N -0.319 5.319 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.282 3.718 16 O -0.407 6.407 17 C 0.003 3.997 18 H 0.117 0.883 19 C -0.167 4.167 20 C -0.158 4.158 21 C -0.176 4.176 22 C 0.311 3.689 23 O -0.443 6.443 24 N -0.346 5.346 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -10.879 10.548 6.511 16.492 hybrid contribution 0.264 -1.046 0.119 1.085 sum -10.616 9.502 6.631 15.714 Atomic orbital electron populations 1.21758 0.94813 1.01962 1.01483 1.21574 0.95597 0.96423 1.00168 1.21960 1.01302 0.96071 1.01330 1.21658 0.81644 1.01451 0.96690 1.48196 1.05266 1.27499 1.50962 1.19307 0.94612 0.82251 0.91141 1.21400 1.41550 0.97232 0.96598 0.92426 1.24930 0.95153 0.98750 0.95185 1.69926 1.41868 1.27718 1.13629 0.86508 0.77750 0.82270 0.80961 1.20591 1.21076 1.19908 1.20350 0.87524 0.82854 0.81121 1.90717 1.14292 1.73252 1.62427 1.21265 0.94242 0.86445 0.97722 0.88310 1.21848 1.04141 0.98530 0.92215 1.21655 0.97474 0.95956 1.00671 1.21657 0.99437 1.01956 0.94562 1.20103 0.80399 0.82127 0.86292 1.90743 1.38966 1.28608 1.86022 1.45232 1.48017 1.28880 1.12494 0.92837 0.92739 0.92323 0.90196 0.92683 0.92661 0.92873 0.89735 0.91370 0.94807 0.93774 0.92646 0.88997 0.89939 0.90959 0.89993 0.88121 0.88185 0.76111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.12 -1.47 3.11 -90.62 -0.28 -1.75 16 3 C -0.15 -1.73 7.81 37.16 0.29 -1.44 16 4 C 0.11 1.56 4.86 -4.04 -0.02 1.54 16 5 N -0.59 -11.25 2.25 -175.06 -0.39 -11.64 16 6 C 0.25 6.07 5.22 -5.19 -0.03 6.04 16 7 C -0.53 -14.27 9.39 -34.44 -0.32 -14.59 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 11 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.50 9.50 5.40 -10.98 -0.06 9.44 16 16 O -0.53 -12.79 16.10 5.56 0.09 -12.70 16 17 C 0.11 1.56 2.20 -69.53 -0.15 1.40 16 18 H 0.10 1.14 3.81 -51.92 -0.20 0.94 16 19 C -0.13 -1.53 5.15 -26.60 -0.14 -1.67 16 20 C -0.12 -1.05 6.04 -26.54 -0.16 -1.21 16 21 C -0.14 -1.44 6.03 -28.12 -0.17 -1.61 16 22 C 0.52 7.80 7.72 -11.87 -0.09 7.70 16 23 O -0.56 -10.50 17.78 5.56 0.10 -10.40 16 24 N -0.69 -10.30 4.80 -55.98 -0.27 -10.57 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 29 H 0.05 0.76 6.22 -51.93 -0.32 0.44 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.52 6.90 -51.93 -0.36 0.16 16 32 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 33 H 0.07 0.77 5.12 -51.93 -0.27 0.50 16 34 H 0.03 0.85 7.96 -51.93 -0.41 0.43 16 35 H 0.04 1.26 7.36 -51.93 -0.38 0.87 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 37 H 0.09 0.97 7.33 -51.93 -0.38 0.59 16 38 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 39 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.40 6.35 8.55 -40.82 -0.35 6.00 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -33.70 341.40 -7.36 -41.05 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.86 Total: 3.61 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.89 Total: 4.44 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.07 Total: -47.33 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.19 Total: -23.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.70 -7.36 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709675584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.730 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds