Wall clock time and date at job start Tue Mar 31 2020 05:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46967 * 2 1 4 4 C 1.52998 * 109.47460 * 119.99955 * 2 1 3 5 5 N 1.46505 * 109.47326 * 174.10978 * 4 2 1 6 6 C 1.46498 * 119.99705 * 276.68960 * 5 4 2 7 7 C 1.50698 * 109.46911 * 269.99765 * 6 5 4 8 8 H 1.08008 * 120.00149 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99979 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00226 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47191 * 90.00046 * 11 9 7 13 13 H 1.48503 * 109.46799 * 209.99544 * 11 9 7 14 14 H 1.48491 * 109.47333 * 329.99453 * 11 9 7 15 15 C 1.34773 * 119.99832 * 96.68456 * 5 4 2 16 16 O 1.21284 * 119.99489 * 185.40735 * 15 5 4 17 17 C 1.50701 * 120.00408 * 5.40744 * 15 5 4 18 18 N 1.46498 * 109.47367 * 174.69449 * 17 15 5 19 19 C 1.34772 * 119.99906 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00294 * 359.97438 * 19 18 17 21 21 C 1.50704 * 119.99838 * 179.97438 * 19 18 17 22 22 C 1.52998 * 117.49883 * 248.62063 * 21 19 18 23 23 C 1.52997 * 117.49900 * 179.97438 * 21 19 18 24 24 H 1.09001 * 109.47062 * 299.99912 * 1 2 3 25 25 H 1.08997 * 109.47407 * 59.99793 * 1 2 3 26 26 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47010 * 240.00598 * 2 1 3 28 28 H 1.09006 * 109.47294 * 64.70734 * 3 2 1 29 29 H 1.09002 * 109.47431 * 184.70894 * 3 2 1 30 30 H 1.08999 * 109.47330 * 304.71032 * 3 2 1 31 31 H 1.08999 * 109.46748 * 54.11017 * 4 2 1 32 32 H 1.09001 * 109.47335 * 294.10922 * 4 2 1 33 33 H 1.09003 * 109.47368 * 29.99776 * 6 5 4 34 34 H 1.09000 * 109.47021 * 150.00181 * 6 5 4 35 35 H 0.96996 * 120.00497 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46752 * 54.69339 * 17 15 5 37 37 H 1.09002 * 109.47046 * 294.69485 * 17 15 5 38 38 H 0.96996 * 119.99701 * 0.02562 * 18 17 15 39 39 H 1.09005 * 115.54875 * 34.32529 * 21 19 18 40 40 H 1.08997 * 117.49504 * 359.97438 * 22 21 19 41 41 H 1.09001 * 117.50048 * 145.02396 * 22 21 19 42 42 H 1.08999 * 117.50128 * 214.98248 * 23 21 19 43 43 H 1.09005 * 117.49960 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4982 -0.8452 1.1804 6 6 4.1051 -1.9448 0.4262 7 6 4.2995 -3.1305 1.3357 8 1 4.0013 -3.0708 2.3721 9 6 4.8591 -4.2912 0.8451 10 7 5.2227 -4.3637 -0.4166 11 14 5.0995 -5.7612 1.9724 12 1 3.8892 -6.6207 1.9299 13 1 6.2782 -6.5435 1.5210 14 1 5.3221 -5.2881 3.3622 15 6 4.2813 0.0524 1.8109 16 8 5.4856 0.0083 1.6740 17 6 3.6606 1.1108 2.6859 18 7 4.7178 1.8756 3.3519 19 6 4.3964 2.8810 4.1898 20 8 3.2319 3.1530 4.3922 21 6 5.4839 3.6674 4.8754 22 6 5.6295 3.5001 6.3893 23 6 5.0546 4.7966 5.8142 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.7471 1.9315 0.9292 29 1 3.1267 1.4438 -0.0844 30 1 1.6094 1.9802 -0.8448 31 1 1.5932 -1.7139 1.3035 32 1 1.7654 -0.1501 2.1361 33 1 3.4505 -2.2237 -0.3996 34 1 5.0705 -1.6263 0.0330 35 1 5.6160 -5.1804 -0.7619 36 1 3.0275 0.6367 3.4359 37 1 3.0581 1.7814 2.0731 38 1 5.6491 1.6583 3.1898 39 1 6.3948 3.8145 4.2951 40 1 4.9384 2.8216 6.8893 41 1 6.6363 3.5371 6.8052 42 1 5.6833 5.6862 5.8519 43 1 3.9854 4.9711 5.9356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751379550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:20 Heat of formation + Delta-G solvation = -59.333695 kcal Electronic energy + Delta-G solvation = -22741.300260 eV Core-core repulsion = 19401.060148 eV Total energy + Delta-G solvation = -3340.240112 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14416 -39.15951 -36.52975 -36.20335 -34.39395 -33.61890 -32.35514 -29.05546 -27.21191 -26.88938 -25.54918 -24.01949 -22.61639 -22.38496 -20.39440 -20.03069 -18.59715 -17.64233 -16.54978 -16.25729 -16.15785 -15.58226 -15.16930 -15.04176 -14.55868 -14.29012 -14.18495 -13.82640 -13.36652 -13.08265 -12.66231 -12.59920 -12.32857 -12.13403 -11.86793 -11.73586 -11.62133 -11.35645 -11.01756 -10.95215 -10.79351 -10.76269 -10.67005 -10.59970 -10.43932 -10.18717 -9.89488 -9.67490 -9.12802 -9.02512 -8.48371 -7.75624 -6.09456 -4.14694 2.48225 3.03110 3.21813 3.27009 3.33940 3.38332 3.72181 3.89186 4.40348 4.58618 4.67769 4.72938 4.86815 5.02006 5.05380 5.11274 5.25083 5.35231 5.41590 5.46770 5.48496 5.61766 5.66267 5.73085 5.78145 5.83951 5.94508 5.97509 6.05460 6.15119 6.25479 6.37703 6.43079 6.54808 6.97473 7.37104 7.43551 7.59360 7.86295 8.16897 8.19950 8.32040 8.77355 8.94051 9.50640 10.98564 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.004775 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.915715 B = 5862.025063 C = 7297.578452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.151 4.151 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.503 3.497 16 O -0.543 6.543 17 C 0.088 3.912 18 N -0.709 5.709 19 C 0.543 3.457 20 O -0.549 6.549 21 C -0.193 4.193 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.413 0.587 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 14.302 6.633 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.208 4.208 4 C -0.014 4.014 5 N -0.318 5.318 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.289 3.711 16 O -0.421 6.421 17 C -0.039 4.039 18 N -0.362 5.362 19 C 0.329 3.671 20 O -0.427 6.427 21 C -0.214 4.214 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.251 0.749 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.702 14.286 6.523 16.394 hybrid contribution 0.577 -1.152 0.330 1.330 sum -4.125 13.134 6.852 15.378 Atomic orbital electron populations 1.21761 0.94844 1.01912 1.01542 1.21551 0.95618 0.96404 0.99964 1.21996 1.01344 0.96098 1.01359 1.21648 0.81358 1.01506 0.96870 1.48138 1.05449 1.27577 1.50633 1.19311 0.94588 0.82327 0.91023 1.21423 1.41395 0.97295 0.96739 0.92442 1.24922 0.95133 0.98725 0.95181 1.69925 1.41869 1.27907 1.13488 0.86499 0.77736 0.82285 0.80922 1.20589 1.21064 1.19913 1.20131 0.87394 0.82429 0.81148 1.90652 1.14357 1.73524 1.63564 1.21495 0.90993 0.94378 0.97010 1.45692 1.11277 1.33582 1.45683 1.19617 0.89225 0.79653 0.78576 1.90673 1.20127 1.68321 1.63623 1.22170 1.00627 1.04315 0.94288 1.22947 1.03118 1.00719 0.92231 1.22949 1.02885 0.92038 1.00691 0.92746 0.92749 0.92374 0.90276 0.92601 0.92635 0.92720 0.89773 0.91282 0.94777 0.93675 0.92659 0.89161 0.88195 0.74924 0.85692 0.88214 0.87745 0.87994 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.12 -1.60 3.11 -90.62 -0.28 -1.88 16 3 C -0.15 -1.97 7.59 37.16 0.28 -1.69 16 4 C 0.11 1.75 4.89 -4.04 -0.02 1.73 16 5 N -0.59 -11.90 2.26 -175.06 -0.40 -12.29 16 6 C 0.25 6.22 5.22 -5.20 -0.03 6.19 16 7 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 11 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.50 10.02 6.52 -10.99 -0.07 9.95 16 16 O -0.54 -12.72 15.23 5.55 0.08 -12.63 16 17 C 0.09 1.41 4.51 -5.19 -0.02 1.39 16 18 N -0.71 -10.64 5.52 -61.47 -0.34 -10.98 16 19 C 0.54 7.81 7.61 -10.99 -0.08 7.73 16 20 O -0.55 -9.40 16.26 5.56 0.09 -9.31 16 21 C -0.19 -2.07 6.19 -91.77 -0.57 -2.64 16 22 C -0.15 -1.39 10.24 -26.71 -0.27 -1.67 16 23 C -0.15 -1.37 10.05 -26.71 -0.27 -1.64 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 28 H 0.06 0.68 6.49 -51.93 -0.34 0.34 16 29 H 0.05 0.83 6.87 -51.93 -0.36 0.47 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 32 H 0.07 0.95 6.10 -51.93 -0.32 0.64 16 33 H 0.03 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.05 1.29 7.35 -51.93 -0.38 0.91 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.09 1.40 7.37 -51.93 -0.38 1.02 16 37 H 0.10 1.48 4.80 -51.93 -0.25 1.23 16 38 H 0.41 6.12 7.45 -40.82 -0.30 5.82 16 39 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -32.52 352.80 -7.85 -40.37 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.90 Total: 5.41 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.41 Total: 2.94 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.00 Total: -48.57 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.17 Total: -21.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.52 -7.85 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.968 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds