Wall clock time and date at job start Tue Mar 31 2020 05:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47354 * 2 1 4 4 C 1.52996 * 109.47148 * 120.00162 * 2 1 3 5 5 N 1.46503 * 109.47018 * 174.61681 * 4 2 1 6 6 C 1.46499 * 119.99651 * 275.76500 * 5 4 2 7 7 C 1.50707 * 109.47306 * 269.99948 * 6 5 4 8 8 H 1.07998 * 119.99379 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99689 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00367 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99609 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47267 * 89.99583 * 11 9 7 13 13 H 1.48506 * 109.47271 * 209.99912 * 11 9 7 14 14 H 1.48506 * 109.47207 * 329.99954 * 11 9 7 15 15 C 1.34780 * 120.00051 * 95.76748 * 5 4 2 16 16 O 1.21275 * 119.99774 * 185.36813 * 15 5 4 17 17 C 1.50698 * 120.00037 * 5.37444 * 15 5 4 18 18 H 1.09005 * 110.28225 * 329.16400 * 17 15 5 19 19 C 1.54476 * 110.24861 * 91.14314 * 17 15 5 20 20 C 1.54628 * 101.76544 * 144.41614 * 19 17 15 21 21 C 1.51273 * 104.19533 * 335.20006 * 20 19 17 22 22 O 1.21286 * 124.94507 * 196.27262 * 21 20 19 23 23 N 1.34427 * 110.11822 * 16.25448 * 21 20 19 24 24 C 1.46494 * 124.35413 * 180.14232 * 23 21 20 25 25 H 1.09005 * 109.47141 * 300.00319 * 1 2 3 26 26 H 1.09000 * 109.47343 * 59.99926 * 1 2 3 27 27 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46849 * 240.00123 * 2 1 3 29 29 H 1.09004 * 109.47060 * 56.36814 * 3 2 1 30 30 H 1.08998 * 109.47278 * 176.37527 * 3 2 1 31 31 H 1.09004 * 109.47265 * 296.37553 * 3 2 1 32 32 H 1.08996 * 109.47705 * 54.61596 * 4 2 1 33 33 H 1.09004 * 109.47430 * 294.61412 * 4 2 1 34 34 H 1.09000 * 109.47418 * 30.00331 * 6 5 4 35 35 H 1.09004 * 109.47018 * 150.00327 * 6 5 4 36 36 H 0.97000 * 119.99858 * 180.02562 * 10 9 7 37 37 H 1.09006 * 110.97210 * 26.29457 * 19 17 15 38 38 H 1.09004 * 110.99988 * 262.54834 * 19 17 15 39 39 H 1.08999 * 110.48160 * 216.52476 * 20 19 17 40 40 H 1.09001 * 110.48558 * 93.88397 * 20 19 17 41 41 H 1.09008 * 109.46670 * 0.02562 * 24 23 21 42 42 H 1.08993 * 109.47368 * 120.02225 * 24 23 21 43 43 H 1.09003 * 109.47296 * 240.02734 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4992 -0.8345 1.1861 6 6 4.1170 -1.9390 0.4481 7 6 4.3182 -3.1113 1.3735 8 1 4.0157 -3.0407 2.4079 9 6 4.8883 -4.2737 0.8996 10 7 5.2571 -4.3594 -0.3598 11 14 5.1371 -5.7270 2.0465 12 1 3.9337 -6.5965 2.0119 13 1 6.3234 -6.5057 1.6088 14 1 5.3518 -5.2340 3.4308 15 6 4.2734 0.0774 1.8071 16 8 5.4783 0.0407 1.6749 17 6 3.6417 1.1425 2.6660 18 1 2.6523 1.3969 2.2858 19 6 3.5441 0.6602 4.1303 20 6 3.7988 1.9702 4.9113 21 6 4.5953 2.8258 3.9510 22 8 5.2327 3.8096 4.2619 23 7 4.4940 2.3367 2.7030 24 6 5.1457 2.9238 1.5296 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6245 1.9748 0.8557 30 1 3.1281 1.4431 0.0650 31 1 1.7307 1.9372 -0.9207 32 1 1.6001 -1.7173 1.2988 33 1 1.7575 -0.1548 2.1366 34 1 3.4671 -2.2338 -0.3759 35 1 5.0810 -1.6180 0.0534 36 1 5.6579 -5.1773 -0.6933 37 1 4.3133 -0.0804 4.3493 38 1 2.5516 0.2643 4.3458 39 1 4.3769 1.7702 5.8134 40 1 2.8551 2.4549 5.1615 41 1 5.7139 3.8036 1.8319 42 1 5.8191 2.1919 1.0838 43 1 4.3889 3.2129 0.8003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:10 Heat of formation + Delta-G solvation = -72.874108 kcal Electronic energy + Delta-G solvation = -23894.216540 eV Core-core repulsion = 20553.389271 eV Total energy + Delta-G solvation = -3340.827268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80441 -38.89110 -36.53686 -35.95292 -33.77415 -32.78435 -32.27912 -28.99087 -27.21655 -26.99556 -26.49922 -25.58303 -23.26904 -21.94336 -20.36479 -19.67315 -18.38301 -17.44870 -16.53056 -16.46904 -15.82331 -15.53007 -14.88945 -14.76252 -14.42112 -14.12921 -13.89014 -13.59601 -13.38011 -13.09973 -12.71355 -12.63429 -12.43207 -12.26247 -12.18771 -11.84099 -11.80111 -11.66359 -11.32014 -11.11538 -10.99843 -10.97675 -10.81906 -10.62171 -10.47470 -10.20096 -9.79639 -9.69313 -9.34495 -8.49974 -8.40453 -7.74613 -6.10998 -4.16324 2.62702 2.93556 3.23524 3.25449 3.33005 3.36807 3.78783 4.33549 4.38674 4.46788 4.76501 4.88872 4.97643 5.01254 5.07517 5.22298 5.24462 5.36258 5.42661 5.50122 5.62007 5.62988 5.66571 5.74177 5.78471 5.85096 5.96828 5.98176 6.05440 6.08714 6.18083 6.35107 6.44748 6.49869 6.94553 7.17644 7.36072 7.43619 7.84787 8.15130 8.20932 8.28614 8.79201 8.94609 9.49170 10.97024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.006078 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.666133 B = 4605.786304 C = 5549.539993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.150 4.150 4 C 0.111 3.889 5 N -0.589 5.589 6 C 0.247 3.753 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.504 3.496 16 O -0.529 6.529 17 C 0.101 3.899 18 H 0.103 0.897 19 C -0.121 4.121 20 C -0.152 4.152 21 C 0.519 3.481 22 O -0.540 6.540 23 N -0.595 5.595 24 C 0.087 3.913 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 10.472 3.944 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.207 4.207 4 C -0.013 4.013 5 N -0.320 5.320 6 C 0.128 3.872 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.288 3.712 16 O -0.406 6.406 17 C -0.007 4.007 18 H 0.121 0.879 19 C -0.159 4.159 20 C -0.192 4.192 21 C 0.307 3.693 22 O -0.418 6.418 23 N -0.328 5.328 24 C -0.054 4.054 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.846 10.854 3.799 15.139 hybrid contribution 0.067 -1.061 0.381 1.129 sum -9.778 9.794 4.180 14.457 Atomic orbital electron populations 1.21758 0.94822 1.01962 1.01471 1.21569 0.95581 0.96408 1.00177 1.21988 1.01393 0.96101 1.01237 1.21627 0.81615 1.01467 0.96595 1.48216 1.05315 1.27132 1.51380 1.19294 0.94375 0.82274 0.91287 1.21407 1.41033 0.97668 0.96660 0.92412 1.24926 0.95162 0.98715 0.95203 1.69925 1.41543 1.27742 1.13959 0.86514 0.77745 0.82224 0.81038 1.20592 1.21087 1.19888 1.20192 0.87506 0.82523 0.80938 1.90682 1.14186 1.73488 1.62206 1.22033 0.94959 0.85941 0.97762 0.87914 1.22585 1.04708 0.97535 0.91090 1.22340 1.01959 0.95757 0.99151 1.20834 0.80593 0.84446 0.83425 1.90696 1.43691 1.27307 1.80130 1.47809 1.49172 1.27316 1.08536 1.21707 0.97740 0.99400 0.86591 0.92847 0.92758 0.92317 0.90227 0.92969 0.92563 0.92720 0.89713 0.91507 0.94867 0.93806 0.92657 0.88977 0.88461 0.87755 0.87689 0.90134 0.90274 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 37.16 0.34 -1.03 16 2 C -0.12 -1.46 3.12 -90.62 -0.28 -1.74 16 3 C -0.15 -1.74 7.83 37.16 0.29 -1.44 16 4 C 0.11 1.59 4.87 -4.04 -0.02 1.57 16 5 N -0.59 -11.27 2.25 -175.06 -0.39 -11.66 16 6 C 0.25 6.05 5.22 -5.19 -0.03 6.03 16 7 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 11 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.50 9.62 4.96 -10.99 -0.05 9.56 16 16 O -0.53 -12.58 14.56 5.56 0.08 -12.50 16 17 C 0.10 1.44 2.24 -68.17 -0.15 1.28 16 18 H 0.10 1.22 3.86 -51.93 -0.20 1.02 16 19 C -0.12 -1.47 6.58 -25.10 -0.17 -1.63 16 20 C -0.15 -1.71 6.86 -26.75 -0.18 -1.89 16 21 C 0.52 8.07 8.02 -10.86 -0.09 7.98 16 22 O -0.54 -10.12 17.35 5.55 0.10 -10.03 16 23 N -0.59 -9.11 2.99 -174.03 -0.52 -9.63 16 24 C 0.09 1.28 10.51 59.84 0.63 1.91 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 29 H 0.05 0.52 6.86 -51.93 -0.36 0.16 16 30 H 0.06 0.78 5.78 -51.93 -0.30 0.48 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.07 0.76 5.85 -51.93 -0.30 0.46 16 34 H 0.03 0.83 8.02 -51.93 -0.42 0.41 16 35 H 0.04 1.24 7.36 -51.93 -0.38 0.86 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.09 1.32 7.91 -51.93 -0.41 0.91 16 38 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.15 7.53 -51.92 -0.39 0.76 16 42 H 0.08 1.34 6.53 -51.93 -0.34 1.00 16 43 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -33.52 342.25 -6.84 -40.36 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.84 Total: -0.47 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -0.13 Total: 7.66 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.18 Total: -46.34 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.52 -6.84 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.514 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds