Wall clock time and date at job start Tue Mar 31 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 C 1.52994 * 109.47166 * 120.00524 * 2 1 3 5 5 N 1.46497 * 109.47324 * 64.99481 * 4 2 1 6 6 C 1.46496 * 120.00580 * 269.99767 * 5 4 2 7 7 C 1.50692 * 109.47300 * 270.00340 * 6 5 4 8 8 H 1.07998 * 120.00121 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99977 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00325 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47058 * 89.99882 * 11 9 7 13 13 H 1.48494 * 109.47259 * 210.00080 * 11 9 7 14 14 H 1.48508 * 109.46793 * 330.00482 * 11 9 7 15 15 C 1.34784 * 119.99617 * 90.00316 * 5 4 2 16 16 O 1.21281 * 119.99766 * 180.02562 * 15 5 4 17 17 C 1.50701 * 119.99842 * 359.97438 * 15 5 4 18 18 H 1.09001 * 110.28715 * 39.48718 * 17 15 5 19 19 C 1.54480 * 110.24915 * 277.50269 * 17 15 5 20 20 C 1.54618 * 101.76574 * 215.58740 * 19 17 15 21 21 C 1.51284 * 104.19819 * 24.79772 * 20 19 17 22 22 O 1.21284 * 124.94089 * 163.77039 * 21 20 19 23 23 N 1.34413 * 110.11346 * 343.74895 * 21 20 19 24 24 C 1.46500 * 124.34722 * 179.85759 * 23 21 20 25 25 H 1.09003 * 109.46872 * 299.99861 * 1 2 3 26 26 H 1.08996 * 109.47176 * 59.99581 * 1 2 3 27 27 H 1.08999 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46652 * 240.00479 * 2 1 3 29 29 H 1.09004 * 109.46606 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47568 * 300.00179 * 3 2 1 31 31 H 1.08996 * 109.47097 * 60.00751 * 3 2 1 32 32 H 1.09001 * 109.46951 * 304.99676 * 4 2 1 33 33 H 1.08998 * 109.46950 * 185.00023 * 4 2 1 34 34 H 1.09006 * 109.46561 * 30.00097 * 6 5 4 35 35 H 1.09004 * 109.47170 * 149.99675 * 6 5 4 36 36 H 0.97004 * 119.99957 * 179.97438 * 10 9 7 37 37 H 1.09003 * 110.96745 * 333.71072 * 19 17 15 38 38 H 1.09003 * 110.96503 * 97.46284 * 19 17 15 39 39 H 1.09008 * 110.48943 * 143.47618 * 20 19 17 40 40 H 1.09000 * 110.48637 * 265.98667 * 20 19 17 41 41 H 1.08999 * 109.47196 * 269.69702 * 24 23 21 42 42 H 1.08997 * 109.47154 * 29.69859 * 24 23 21 43 43 H 1.09002 * 109.47147 * 149.69648 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 -2.1329 1.1904 6 6 0.3746 -2.5660 1.7612 7 6 0.5717 -2.9410 3.2073 8 1 1.5510 -2.8646 3.6563 9 6 -0.4981 -3.3814 3.9573 10 7 -1.6905 -3.4748 3.4104 11 14 -0.2537 -3.8469 5.7498 12 1 -0.4654 -2.6514 6.6050 13 1 -1.2287 -4.9024 6.1245 14 1 1.1274 -4.3567 5.9450 15 6 2.4715 -3.0331 0.6114 16 8 2.1504 -4.2016 0.5623 17 6 3.7858 -2.5874 0.0238 18 1 4.2498 -1.8358 0.6625 19 6 3.5717 -2.0225 -1.3979 20 6 4.8569 -2.4896 -2.1196 21 6 5.3023 -3.7041 -1.3353 22 8 6.1019 -4.5282 -1.7257 23 7 4.6834 -3.7366 -0.1426 24 6 4.8838 -4.7816 0.8645 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 -0.3484 -1.7532 1.6918 35 1 0.0042 -3.4298 1.2090 36 1 -2.4431 -3.7850 3.9379 37 1 2.6850 -2.4560 -1.8605 38 1 3.5079 -0.9345 -1.3798 39 1 4.6373 -2.7618 -3.1521 40 1 5.6183 -1.7104 -2.0852 41 1 4.1628 -5.5833 0.7046 42 1 5.8948 -5.1797 0.7788 43 1 4.7427 -4.3592 1.8594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822809611.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:14 Heat of formation + Delta-G solvation = -70.436089 kcal Electronic energy + Delta-G solvation = -23821.273343 eV Core-core repulsion = 20480.551795 eV Total energy + Delta-G solvation = -3340.721548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77642 -38.86209 -36.58987 -35.96760 -33.63073 -32.75491 -32.32983 -29.04999 -27.14060 -26.90229 -26.49030 -25.50312 -23.26670 -22.09342 -20.35945 -19.56672 -18.41332 -17.33228 -16.67670 -16.51239 -15.79275 -15.46305 -14.92373 -14.70411 -14.53403 -13.95977 -13.79029 -13.57434 -13.27477 -13.22735 -12.63924 -12.57553 -12.35556 -12.25433 -12.13930 -11.90949 -11.64116 -11.58136 -11.42270 -11.19210 -11.06581 -10.97983 -10.77153 -10.47722 -10.33854 -10.18768 -9.74719 -9.66281 -9.32671 -8.48196 -8.37622 -7.75357 -6.10299 -4.14989 2.63074 2.99673 3.22487 3.25574 3.33178 3.36719 3.78016 4.29167 4.37251 4.44519 4.69943 4.85686 4.94000 5.07119 5.09665 5.20799 5.24849 5.37187 5.47168 5.54417 5.61217 5.70052 5.75248 5.77499 5.80903 5.87268 6.04014 6.07142 6.10010 6.16769 6.23194 6.47338 6.51862 6.62322 6.97435 7.20835 7.35396 7.45126 7.85482 8.16925 8.21411 8.29520 8.80576 8.95769 9.50138 10.97603 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.006239 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.553704 B = 4486.684156 C = 5842.556192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.145 4.145 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.243 3.757 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.499 3.501 16 O -0.527 6.527 17 C 0.108 3.892 18 H 0.099 0.901 19 C -0.123 4.123 20 C -0.152 4.152 21 C 0.517 3.483 22 O -0.540 6.540 23 N -0.596 5.596 24 C 0.101 3.899 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 10.329 -7.902 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.202 4.202 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.124 3.876 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.283 3.717 16 O -0.403 6.403 17 C 0.000 4.000 18 H 0.117 0.883 19 C -0.161 4.161 20 C -0.193 4.193 21 C 0.305 3.695 22 O -0.418 6.418 23 N -0.329 5.329 24 C -0.041 4.041 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.255 9.128 -7.993 15.260 hybrid contribution -0.119 -0.154 1.267 1.282 sum 9.136 8.974 -6.725 14.465 Atomic orbital electron populations 1.21930 0.94512 1.03103 1.01085 1.21795 0.97355 0.95996 0.99058 1.21792 1.00521 0.95962 1.01974 1.21637 0.98982 0.82326 0.98398 1.48218 1.21749 1.06261 1.55663 1.19434 0.78413 0.96478 0.93252 1.21411 0.95050 1.44709 0.95474 0.92571 1.24915 0.95058 0.95352 0.98660 1.69922 0.99839 1.46856 1.36609 0.86525 0.78077 0.78238 0.84745 1.20631 1.21086 1.19947 1.20234 0.85349 0.86555 0.79573 1.90701 1.74476 1.17228 1.57891 1.21814 0.90855 0.88622 0.98703 0.88312 1.22739 0.98520 1.02295 0.92518 1.22352 0.98555 0.97379 1.00968 1.20805 0.80256 0.86814 0.81659 1.90700 1.35225 1.43721 1.72120 1.47860 1.42448 1.25006 1.17561 1.21561 1.01609 0.90508 0.90385 0.92493 0.93538 0.91274 0.90751 0.92872 0.92699 0.92439 0.89663 0.91688 0.93955 0.94054 0.92682 0.89311 0.87996 0.87841 0.87653 0.91199 0.91220 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.18 37.16 0.30 -1.71 16 2 C -0.12 -1.41 2.86 -90.62 -0.26 -1.67 16 3 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 4 C 0.11 1.55 4.67 -4.05 -0.02 1.54 16 5 N -0.59 -11.11 2.28 -175.07 -0.40 -11.51 16 6 C 0.24 5.88 4.23 -5.20 -0.02 5.86 16 7 C -0.53 -14.23 9.39 -34.44 -0.32 -14.55 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 11 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.50 9.47 6.53 -10.98 -0.07 9.40 16 16 O -0.53 -12.50 14.66 5.56 0.08 -12.42 16 17 C 0.11 1.51 2.90 -68.16 -0.20 1.32 16 18 H 0.10 1.16 6.33 -51.93 -0.33 0.84 16 19 C -0.12 -1.31 5.13 -25.10 -0.13 -1.44 16 20 C -0.15 -1.59 6.86 -26.75 -0.18 -1.77 16 21 C 0.52 7.95 8.02 -10.86 -0.09 7.87 16 22 O -0.54 -10.14 17.59 5.55 0.10 -10.05 16 23 N -0.60 -9.33 3.00 -174.02 -0.52 -9.85 16 24 C 0.10 1.60 9.63 59.85 0.58 2.18 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.14 5.89 -51.93 -0.31 0.84 16 28 H 0.07 0.80 4.81 -51.93 -0.25 0.55 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.06 0.74 5.95 -51.93 -0.31 0.43 16 34 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 35 H 0.04 1.16 7.42 -51.93 -0.39 0.77 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 38 H 0.10 0.79 6.38 -51.93 -0.33 0.46 16 39 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.25 7.51 -51.93 -0.39 0.86 16 42 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -33.68 340.15 -6.85 -40.52 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.78 Total: -0.84 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.17 Total: 7.71 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.18 Total: -46.33 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.18 Total: -22.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.68 -6.85 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822809611.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.912 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds