Wall clock time and date at job start Tue Mar 31 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.53000 * 109.46736 * 119.99578 * 2 1 3 5 5 N 1.46498 * 109.46918 * 174.09940 * 4 2 1 6 6 C 1.46503 * 120.00017 * 276.68704 * 5 4 2 7 7 C 1.50708 * 109.46956 * 270.00113 * 6 5 4 8 8 H 1.07992 * 119.99740 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99444 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00530 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99341 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47108 * 90.00289 * 11 9 7 13 13 H 1.48504 * 109.46707 * 209.99874 * 11 9 7 14 14 H 1.48496 * 109.47488 * 329.99868 * 11 9 7 15 15 C 1.34775 * 119.99762 * 96.68713 * 5 4 2 16 16 O 1.21284 * 119.99820 * 185.41381 * 15 5 4 17 17 C 1.50694 * 120.00439 * 5.41542 * 15 5 4 18 18 C 1.52996 * 109.47550 * 174.83273 * 17 15 5 19 19 H 1.09004 * 110.21439 * 304.52644 * 18 17 15 20 20 C 1.54476 * 110.32167 * 182.54688 * 18 17 15 21 21 C 1.54635 * 101.76589 * 215.54712 * 20 18 17 22 22 C 1.51282 * 104.19480 * 24.79455 * 21 20 18 23 23 O 1.21272 * 124.94146 * 163.78477 * 22 21 20 24 24 N 1.34425 * 110.11401 * 343.74954 * 22 21 20 25 25 H 1.08998 * 109.47307 * 300.00293 * 1 2 3 26 26 H 1.09005 * 109.46825 * 59.99842 * 1 2 3 27 27 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46948 * 240.00104 * 2 1 3 29 29 H 1.08996 * 109.47032 * 64.70889 * 3 2 1 30 30 H 1.08997 * 109.47105 * 184.70943 * 3 2 1 31 31 H 1.08999 * 109.46946 * 304.70562 * 3 2 1 32 32 H 1.09004 * 109.46893 * 54.10306 * 4 2 1 33 33 H 1.08993 * 109.47317 * 294.10397 * 4 2 1 34 34 H 1.09001 * 109.47241 * 29.99907 * 6 5 4 35 35 H 1.08997 * 109.46793 * 149.99935 * 6 5 4 36 36 H 0.96993 * 120.00126 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46841 * 54.83018 * 17 15 5 38 38 H 1.09003 * 109.46964 * 294.83576 * 17 15 5 39 39 H 1.09000 * 110.97122 * 97.42691 * 20 18 17 40 40 H 1.09004 * 110.96992 * 333.66349 * 20 18 17 41 41 H 1.09002 * 110.47910 * 266.12325 * 21 20 18 42 42 H 1.08993 * 110.48776 * 143.47797 * 21 20 18 43 43 H 0.97002 * 124.34549 * 179.60973 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4981 -0.8454 1.1805 6 6 4.1048 -1.9452 0.4264 7 6 4.2990 -3.1309 1.3362 8 1 4.0008 -3.0710 2.3724 9 6 4.8575 -4.2921 0.8454 10 7 5.2211 -4.3648 -0.4164 11 14 5.0989 -5.7615 1.9732 12 1 3.8883 -6.6206 1.9329 13 1 6.2768 -6.5445 1.5206 14 1 5.3236 -5.2877 3.3624 15 6 4.2813 0.0521 1.8109 16 8 5.4856 0.0080 1.6740 17 6 3.6609 1.1105 2.6859 18 6 4.7652 1.9114 3.3787 19 1 5.4256 1.2426 3.9308 20 6 4.1500 2.9611 4.3306 21 6 5.1402 4.1395 4.1826 22 6 5.7611 3.9334 2.8186 23 8 6.3771 4.7761 2.2012 24 7 5.5313 2.6800 2.3907 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.7473 1.9314 0.9291 30 1 3.1268 1.4437 -0.0844 31 1 1.6095 1.9801 -0.8448 32 1 1.5929 -1.7138 1.3037 33 1 1.7654 -0.1500 2.1361 34 1 3.4502 -2.2242 -0.3993 35 1 5.0702 -1.6269 0.0331 36 1 5.6136 -5.1818 -0.7617 37 1 3.0297 0.6364 3.4376 38 1 3.0563 1.7797 2.0736 39 1 4.1313 2.5938 5.3567 40 1 3.1509 3.2475 4.0021 41 1 5.9035 4.0962 4.9596 42 1 4.6095 5.0908 4.2205 43 1 5.8332 2.3286 1.5385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824234411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:04 Heat of formation + Delta-G solvation = -90.622059 kcal Electronic energy + Delta-G solvation = -23272.975698 eV Core-core repulsion = 19931.378821 eV Total energy + Delta-G solvation = -3341.596877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46508 -39.12641 -36.67958 -36.16092 -33.74667 -32.36380 -31.22618 -31.00913 -27.69885 -27.13312 -25.87559 -24.97806 -22.73000 -21.25988 -20.44270 -20.26163 -18.35708 -17.22877 -16.57236 -16.46879 -16.35791 -15.50386 -15.05124 -14.63277 -14.54494 -14.20414 -13.74168 -13.57537 -13.48655 -13.05874 -12.82966 -12.66169 -12.51882 -12.31969 -12.11180 -11.79045 -11.64732 -11.38423 -11.23692 -11.13853 -10.96853 -10.93125 -10.79290 -10.58224 -10.44958 -10.17999 -9.77963 -9.66469 -8.99354 -8.95519 -8.48118 -7.70904 -6.08953 -4.14259 2.69437 3.25903 3.28261 3.33740 3.37580 3.53707 3.79902 4.32126 4.37853 4.40545 4.63853 4.89562 4.98354 5.06422 5.10164 5.17800 5.25114 5.27929 5.39859 5.47056 5.52029 5.62274 5.64374 5.66911 5.75621 5.79448 5.88788 6.00551 6.06779 6.12242 6.21535 6.39292 6.49588 6.95099 7.00685 7.23948 7.40769 7.48100 7.87032 8.18141 8.34281 8.39694 8.83418 9.00208 9.51170 10.99024 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.005178 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.207233 B = 5405.747062 C = 6489.378219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.115 3.885 5 N -0.593 5.593 6 C 0.246 3.754 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.506 3.494 16 O -0.545 6.545 17 C -0.164 4.164 18 C 0.147 3.853 19 H 0.089 0.911 20 C -0.130 4.130 21 C -0.156 4.156 22 C 0.514 3.486 23 O -0.547 6.547 24 N -0.711 5.711 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.215 12.310 7.816 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.010 4.010 5 N -0.323 5.323 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.293 3.707 16 O -0.423 6.423 17 C -0.204 4.204 18 C 0.041 3.959 19 H 0.107 0.893 20 C -0.168 4.168 21 C -0.196 4.196 22 C 0.299 3.701 23 O -0.426 6.426 24 N -0.366 5.366 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.202 12.601 7.372 17.257 hybrid contribution 0.129 -1.308 0.182 1.327 sum -9.074 11.293 7.554 16.338 Atomic orbital electron populations 1.21760 0.94971 1.01877 1.01398 1.21565 0.95463 0.96440 1.00182 1.21960 1.01421 0.96029 1.01037 1.21562 0.81720 1.01136 0.96562 1.48194 1.05283 1.27911 1.50958 1.19264 0.94495 0.82543 0.91020 1.21412 1.41337 0.97274 0.96660 0.92516 1.24932 0.95193 0.98751 0.95159 1.69927 1.41915 1.27855 1.13512 0.86511 0.77720 0.82335 0.80922 1.20635 1.21091 1.19925 1.20230 0.87284 0.82214 0.80960 1.90668 1.14447 1.73639 1.63587 1.22386 0.99315 0.98192 1.00535 1.21435 0.92476 0.92803 0.89229 0.89300 1.22724 0.99069 0.94457 1.00514 1.22340 1.00164 1.00629 0.96481 1.20874 0.79259 0.82006 0.87917 1.90730 1.42670 1.46731 1.62447 1.46406 1.55922 1.12386 1.21933 0.92871 0.92826 0.92413 0.90410 0.92844 0.92592 0.92903 0.90174 0.91427 0.95115 0.93807 0.92682 0.88036 0.88046 0.89012 0.89809 0.87934 0.88283 0.74128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.12 -1.51 3.11 -90.61 -0.28 -1.79 16 3 C -0.15 -1.75 7.59 37.16 0.28 -1.47 16 4 C 0.11 1.68 4.89 -4.04 -0.02 1.66 16 5 N -0.59 -11.43 2.26 -175.06 -0.40 -11.83 16 6 C 0.25 6.14 5.22 -5.19 -0.03 6.11 16 7 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 11 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.51 9.33 6.31 -10.99 -0.07 9.26 16 16 O -0.54 -12.34 14.26 5.55 0.08 -12.26 16 17 C -0.16 -2.02 3.67 -27.89 -0.10 -2.12 16 18 C 0.15 1.74 3.02 -67.02 -0.20 1.54 16 19 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 20 C -0.13 -1.02 6.69 -25.10 -0.17 -1.19 16 21 C -0.16 -1.45 6.86 -26.74 -0.18 -1.64 16 22 C 0.51 7.37 8.43 -10.86 -0.09 7.27 16 23 O -0.55 -10.13 18.03 5.56 0.10 -10.03 16 24 N -0.71 -10.16 5.58 -52.77 -0.29 -10.46 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.19 8.01 -51.93 -0.42 0.77 16 29 H 0.05 0.53 6.49 -51.93 -0.34 0.20 16 30 H 0.06 0.79 6.87 -51.93 -0.36 0.44 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 33 H 0.07 0.78 6.10 -51.93 -0.32 0.47 16 34 H 0.03 0.79 7.94 -51.93 -0.41 0.37 16 35 H 0.04 1.25 7.35 -51.93 -0.38 0.87 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.10 1.03 7.37 -51.93 -0.38 0.65 16 38 H 0.10 1.10 4.79 -51.93 -0.25 0.86 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.55 7.92 -51.93 -0.41 0.14 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.42 6.86 7.72 -40.82 -0.31 6.54 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -33.78 343.97 -7.48 -41.26 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.92 Total: 3.75 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.94 Total: 3.42 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.05 Total: -47.66 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.18 Total: -22.30 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.78 -7.48 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824234411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.365 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds