Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00067 * 2 1 4 4 C 1.50704 * 109.46980 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99655 * 84.03776 * 4 3 2 6 6 C 1.32987 * 120.00077 * 264.30631 * 4 3 2 7 7 C 1.47105 * 119.99611 * 8.87789 * 6 4 3 8 8 O 1.21607 * 120.00654 * 6.14122 * 7 6 4 9 9 N 1.34784 * 119.99623 * 186.13371 * 7 6 4 10 10 C 1.47072 * 120.88250 * 354.75320 * 9 7 6 11 11 C 1.53699 * 108.27911 * 128.75125 * 10 9 7 12 12 N 1.46901 * 109.25092 * 54.08350 * 11 10 9 13 13 C 1.46905 * 111.00026 * 172.61040 * 12 11 10 14 14 C 1.50697 * 109.46887 * 59.31822 * 13 12 11 15 15 H 1.08000 * 120.00104 * 5.03120 * 14 13 12 16 16 C 1.37878 * 119.99771 * 185.02788 * 14 13 12 17 17 N 1.31514 * 120.00215 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46921 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47301 * 119.99456 * 18 16 14 21 21 H 1.48493 * 109.47339 * 240.00233 * 18 16 14 22 22 C 1.46896 * 111.27049 * 296.75517 * 12 11 10 23 23 C 1.47079 * 120.87655 * 175.03296 * 9 7 6 24 24 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47312 * 299.99557 * 1 2 3 26 26 H 1.08996 * 109.47611 * 60.00096 * 1 2 3 27 27 H 1.08996 * 109.47093 * 59.99977 * 3 2 1 28 28 H 1.09002 * 109.47041 * 300.00173 * 3 2 1 29 29 H 1.09001 * 109.47107 * 89.99881 * 5 4 3 30 30 H 1.09002 * 109.46494 * 209.99595 * 5 4 3 31 31 H 1.08992 * 109.47351 * 329.99671 * 5 4 3 32 32 H 1.07993 * 120.00352 * 188.87562 * 6 4 3 33 33 H 1.09003 * 109.62939 * 248.52042 * 10 9 7 34 34 H 1.09004 * 109.63187 * 9.10295 * 10 9 7 35 35 H 1.08995 * 109.64636 * 294.08412 * 11 10 9 36 36 H 1.08993 * 109.42164 * 173.94413 * 11 10 9 37 37 H 1.09003 * 109.47131 * 179.32252 * 13 12 11 38 38 H 1.09001 * 109.46654 * 299.32243 * 13 12 11 39 39 H 0.96998 * 120.00492 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.49530 * 303.14704 * 22 12 11 41 41 H 1.09004 * 109.49610 * 183.06535 * 22 12 11 42 42 H 1.08992 * 109.63452 * 350.89240 * 23 9 7 43 43 H 1.09001 * 109.63152 * 111.48242 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2524 0.9919 -1.2991 6 6 4.1849 1.2475 1.1451 7 6 3.4598 1.2346 2.4250 8 8 2.2570 1.0558 2.4407 9 7 4.1286 1.4207 3.5803 10 6 5.5956 1.5241 3.5951 11 6 5.9816 2.7938 4.3704 12 7 5.3482 2.7635 5.6955 13 6 5.8290 3.8696 6.5343 14 6 5.5149 5.1819 5.8634 15 1 4.9379 5.1973 4.9505 16 6 5.9642 6.3630 6.4149 17 7 6.6663 6.3444 7.5268 18 14 5.5743 7.9898 5.5838 19 1 4.7750 7.7401 4.3574 20 1 4.7972 8.8474 6.5143 21 1 6.8401 8.6753 5.2191 22 6 3.8834 2.7837 5.5866 23 6 3.4110 1.5197 4.8603 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 4.5114 1.9640 -1.7187 30 1 5.1626 0.4208 -1.1165 31 1 3.6183 0.4505 -2.0010 32 1 5.2632 1.3067 1.1360 33 1 6.0195 0.6483 4.0865 34 1 5.9684 1.5902 2.5729 35 1 5.6415 3.6739 3.8248 36 1 7.0647 2.8327 4.4859 37 1 5.3352 3.8305 7.5053 38 1 6.9067 3.7801 6.6708 39 1 6.9827 7.1752 7.9147 40 1 3.5726 3.6640 5.0241 41 1 3.4449 2.8154 6.5840 42 1 2.3388 1.5830 4.6751 43 1 3.6289 0.6435 5.4710 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827479297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -65.807736 kcal Electronic energy + Delta-G solvation = -22868.970179 eV Core-core repulsion = 19528.449332 eV Total energy + Delta-G solvation = -3340.520847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32195 -39.45904 -38.46305 -36.03724 -35.71951 -34.32038 -32.20376 -30.15781 -28.80162 -28.60556 -27.07524 -26.27501 -24.59275 -24.21055 -22.39968 -20.67314 -19.30893 -18.60538 -18.28592 -17.40154 -16.99013 -16.83635 -16.60412 -16.21424 -16.00268 -15.58840 -15.35999 -15.20740 -14.67460 -14.50651 -14.23158 -13.97966 -13.67619 -13.55211 -13.35422 -13.05278 -12.96990 -12.82047 -12.53170 -12.47921 -12.42806 -12.20909 -12.09804 -11.92269 -11.80262 -11.61040 -10.87177 -10.63358 -10.34891 -10.14218 -9.63084 -9.04624 -8.18521 -6.37894 0.24111 1.32973 1.35349 1.45880 2.03413 2.22625 2.34461 3.06548 3.07362 3.30379 3.57415 3.87714 3.97849 4.08400 4.16769 4.26634 4.34498 4.37118 4.49624 4.53762 4.55932 4.63045 4.65706 4.76706 4.78634 4.82403 4.85215 4.90133 5.03557 5.06154 5.18643 5.21803 5.30846 5.35361 5.47273 5.60640 5.71738 5.99038 6.17451 6.23737 6.44829 6.49758 6.82625 7.18616 7.33813 8.83993 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003946 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.952933 B = 7093.938391 C = 7383.686771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.075 3.925 4 C -0.035 4.035 5 C -0.117 4.117 6 C -0.216 4.216 7 C 0.534 3.466 8 O -0.570 6.570 9 N -0.609 5.609 10 C 0.118 3.882 11 C 0.050 3.950 12 N -0.538 5.538 13 C 0.200 3.800 14 C -0.556 4.556 15 H 0.050 0.950 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.056 3.944 23 C 0.128 3.872 24 H 0.096 0.904 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.020 0.980 36 H 0.081 0.919 37 H 0.004 0.996 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.013 0.987 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 -11.379 -17.166 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.001 4.001 4 C -0.037 4.037 5 C -0.174 4.174 6 C -0.237 4.237 7 C 0.327 3.673 8 O -0.453 6.453 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.079 4.079 12 N -0.261 5.261 13 C 0.074 3.926 14 C -0.595 4.595 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.563 5.563 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.199 1.199 22 C -0.073 4.073 23 C 0.005 3.995 24 H 0.114 0.886 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.179 0.821 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.039 0.961 36 H 0.099 0.901 37 H 0.022 0.978 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.176 -11.978 -16.776 21.253 hybrid contribution -0.564 2.308 0.093 2.378 sum -5.739 -9.670 -16.683 20.118 Atomic orbital electron populations 1.22798 0.80102 1.03368 1.00070 1.87829 1.20909 1.27284 1.95476 1.21876 0.90741 0.86142 1.01355 1.22634 0.94399 0.90212 0.96459 1.21010 1.00366 1.03696 0.92290 1.22747 1.01724 1.08610 0.90591 1.19122 0.86853 0.76114 0.85221 1.90679 1.15867 1.51518 1.87232 1.48206 1.08421 1.70851 1.06594 1.22214 0.78223 0.97849 1.02174 1.22386 0.99668 0.96268 0.89581 1.62423 1.05259 1.45001 1.13451 1.19437 0.94844 0.86487 0.91850 1.21959 1.34331 0.93446 1.09795 0.93150 1.25749 0.94659 1.02641 0.95393 1.70049 1.37215 1.28446 1.20547 0.85572 0.78186 0.79772 0.78526 1.19700 1.20479 1.19940 1.22208 0.89510 0.95794 0.99789 1.21597 0.96773 0.97557 0.83601 0.88585 0.95163 0.92662 0.91803 0.91848 0.88747 0.89329 0.90228 0.82067 0.89399 0.86575 0.96127 0.90055 0.97769 0.96668 0.92510 0.96827 0.90741 0.89941 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.40 -10.80 10.32 -136.90 -1.41 -12.21 16 3 C 0.07 1.88 5.06 71.24 0.36 2.24 16 4 C -0.03 -0.76 5.73 -17.61 -0.10 -0.86 16 5 C -0.12 -1.57 10.05 71.24 0.72 -0.85 16 6 C -0.22 -5.11 8.94 23.43 0.21 -4.90 16 7 C 0.53 16.74 7.48 86.57 0.65 17.39 16 8 O -0.57 -21.00 12.39 8.03 0.10 -20.90 16 9 N -0.61 -18.79 3.00 -821.31 -2.47 -21.26 16 10 C 0.12 3.12 6.55 86.51 0.57 3.68 16 11 C 0.05 1.79 5.17 86.54 0.45 2.23 16 12 N -0.54 -22.31 4.83 -898.86 -4.34 -26.65 16 13 C 0.20 10.28 5.11 85.56 0.44 10.72 16 14 C -0.56 -30.42 7.75 25.60 0.20 -30.23 16 15 H 0.05 2.77 5.88 -2.91 -0.02 2.76 16 16 C 0.02 0.86 5.46 84.65 0.46 1.32 16 17 N -0.92 -54.01 13.29 21.45 0.28 -53.72 16 18 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.06 2.20 5.24 86.39 0.45 2.65 16 23 C 0.13 4.20 6.58 86.35 0.57 4.76 16 24 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 2.00 5.42 -2.39 -0.01 1.98 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 31 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 32 H 0.16 2.77 5.91 -2.91 -0.02 2.75 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.12 2.28 5.37 -2.38 -0.01 2.27 16 35 H 0.02 0.83 6.79 -2.39 -0.02 0.82 16 36 H 0.08 2.83 8.11 -2.39 -0.02 2.82 16 37 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.01 0.60 6.92 -2.39 -0.02 0.58 16 41 H 0.07 2.90 8.05 -2.38 -0.02 2.88 16 42 H 0.08 2.78 7.09 -2.39 -0.02 2.76 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.76 342.08 1.39 -67.36 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.99 Total: 11.63 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 6.21 Total: 10.10 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -6.52 Total: -101.63 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.31 Total: -33.11 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.76 1.39 -67.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827479297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.556 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds