Wall clock time and date at job start Tue Mar 31 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46864 * 2 1 4 4 C 1.50697 * 109.47278 * 120.00239 * 2 1 3 5 5 H 1.08002 * 120.00078 * 119.75832 * 4 2 1 6 6 C 1.37881 * 120.00080 * 299.75460 * 4 2 1 7 7 N 1.31514 * 119.99717 * 1.45374 * 6 4 2 8 8 Si 1.86794 * 119.99997 * 181.45066 * 6 4 2 9 9 H 1.48500 * 109.47258 * 270.00316 * 8 6 4 10 10 H 1.48504 * 109.47349 * 30.00395 * 8 6 4 11 11 H 1.48501 * 109.47050 * 150.00601 * 8 6 4 12 12 C 1.52996 * 109.47172 * 240.00608 * 2 1 3 13 13 N 1.46501 * 109.47641 * 59.99295 * 12 2 1 14 14 C 1.34775 * 120.00221 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00068 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99826 * 180.02562 * 14 13 12 17 17 C 1.46490 * 119.99778 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47222 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.70711 * 60.57351 * 18 17 16 20 20 C 1.53497 * 109.71244 * 181.20523 * 18 17 16 21 21 C 1.53237 * 108.17126 * 182.07132 * 20 18 17 22 22 C 1.50446 * 109.44292 * 313.18340 * 21 20 18 23 23 C 1.30683 * 122.49170 * 17.48767 * 22 21 20 24 24 O 1.35136 * 123.34784 * 359.54146 * 23 22 21 25 25 H 1.08999 * 109.46886 * 292.65112 * 1 2 3 26 26 H 1.09002 * 109.47465 * 52.65095 * 1 2 3 27 27 H 1.08992 * 109.46958 * 172.65791 * 1 2 3 28 28 H 1.09009 * 109.46980 * 187.45602 * 3 2 1 29 29 H 1.09000 * 109.47761 * 307.45642 * 3 2 1 30 30 H 1.09004 * 109.46995 * 67.46178 * 3 2 1 31 31 H 0.97000 * 120.00268 * 357.20749 * 7 6 4 32 32 H 1.09000 * 109.47758 * 180.02562 * 12 2 1 33 33 H 1.09010 * 109.47076 * 299.99789 * 12 2 1 34 34 H 0.97003 * 119.99710 * 0.02562 * 13 12 2 35 35 H 0.96997 * 119.99671 * 359.97438 * 16 14 13 36 36 H 1.09007 * 109.46979 * 299.99375 * 17 16 14 37 37 H 1.08997 * 109.47876 * 59.99392 * 17 16 14 38 38 H 1.08997 * 109.72457 * 301.75197 * 20 18 17 39 39 H 1.09002 * 109.72646 * 62.41388 * 20 18 17 40 40 H 1.09000 * 109.47312 * 193.19952 * 21 20 18 41 41 H 1.09002 * 109.48473 * 73.18339 * 21 20 18 42 42 H 1.08001 * 118.75119 * 197.50328 * 22 21 20 43 43 H 1.08002 * 118.32477 * 179.56456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6501 -1.5908 1.1313 6 6 1.7035 -0.2365 2.4827 7 7 0.9279 0.8187 2.6036 8 14 2.3594 -1.0932 4.0075 9 1 1.4063 -2.1507 4.4298 10 1 3.6767 -1.7073 3.7023 11 1 2.5169 -0.1027 5.1027 12 6 2.0400 -0.7211 -1.2493 13 7 1.5516 -0.0305 -2.4455 14 6 1.8768 -0.4912 -3.6696 15 8 2.5751 -1.4802 -3.7812 16 7 1.4278 0.1444 -4.7700 17 6 1.7808 -0.3566 -6.1005 18 6 1.1477 0.5389 -7.1673 19 1 1.5231 1.5569 -7.0627 20 6 1.4893 0.0013 -8.5639 21 6 0.8835 0.9509 -9.6029 22 6 -0.5402 1.2608 -9.2281 23 6 -1.0117 1.0508 -8.0276 24 8 -0.2751 0.5320 -7.0204 25 1 -0.3633 0.3958 0.9484 26 1 -0.3634 0.6234 -0.8169 27 1 -0.3633 -1.0192 -0.1313 28 1 3.1219 1.4455 -0.1334 29 1 1.5719 1.9935 -0.8157 30 1 1.7896 1.9164 0.9492 31 1 0.6202 1.2878 1.8123 32 1 3.1300 -0.7215 -1.2491 33 1 1.6767 -1.7489 -1.2494 34 1 0.9941 0.7583 -2.3564 35 1 0.8704 0.9332 -4.6809 36 1 2.8648 -0.3490 -6.2159 37 1 1.4105 -1.3753 -6.2153 38 1 2.5714 -0.0383 -8.6883 39 1 1.0675 -0.9962 -8.6875 40 1 0.9061 0.4777 -10.5845 41 1 1.4611 1.8749 -9.6314 42 1 -1.1976 1.6721 -9.9799 43 1 -2.0428 1.3046 -7.8303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838565707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:24 Heat of formation + Delta-G solvation = -59.597068 kcal Electronic energy + Delta-G solvation = -22330.481767 eV Core-core repulsion = 18990.230235 eV Total energy + Delta-G solvation = -3340.251532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55986 -39.47584 -36.92346 -34.91469 -34.27094 -33.50049 -31.87803 -30.36840 -27.62887 -26.01975 -25.84243 -24.57122 -23.87535 -22.78042 -20.62810 -19.33410 -18.86865 -18.36632 -17.16191 -16.62096 -16.40144 -15.98783 -15.15587 -14.96597 -14.45738 -14.06439 -13.87155 -13.72787 -13.70693 -13.29730 -13.11822 -12.71321 -12.64795 -12.50333 -12.36644 -11.50445 -11.30400 -11.24798 -11.08120 -10.89534 -10.86110 -10.60071 -10.58787 -10.09543 -9.85709 -9.82892 -9.47990 -9.02117 -8.73810 -8.43173 -8.32382 -8.23397 -6.24280 -4.08966 1.97248 2.94709 3.12606 3.45065 3.47960 3.61685 3.63700 4.27046 4.32352 4.51667 4.54425 4.72814 4.75018 4.88726 5.01029 5.22735 5.27661 5.35021 5.43612 5.51469 5.61434 5.77023 5.95678 6.02058 6.18856 6.23018 6.28888 6.57495 6.60057 6.65081 6.72501 6.83934 6.97382 7.10180 7.14115 7.26935 7.32575 7.53302 7.69508 8.21694 8.41075 8.43713 8.85734 9.00242 9.61826 11.01883 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042941 B = 0.002899 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.901454 B = 9656.075387 C =10013.276329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 C -0.144 4.144 4 C -0.584 4.584 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.919 5.919 8 Si 1.068 2.932 9 H -0.288 1.288 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.158 3.842 13 N -0.735 5.735 14 C 0.699 3.301 15 O -0.600 6.600 16 N -0.750 5.750 17 C 0.150 3.850 18 C 0.078 3.922 19 H 0.079 0.921 20 C -0.153 4.153 21 C -0.080 4.080 22 C -0.288 4.288 23 C 0.058 3.942 24 O -0.316 6.316 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.281 0.719 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.393 0.607 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 3.564 -22.089 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 C -0.202 4.202 4 C -0.623 4.623 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.560 5.560 8 Si 0.897 3.103 9 H -0.215 1.215 10 H -0.215 1.215 11 H -0.211 1.211 12 C 0.036 3.964 13 N -0.389 5.389 14 C 0.399 3.601 15 O -0.479 6.479 16 N -0.407 5.407 17 C 0.025 3.975 18 C 0.021 3.979 19 H 0.097 0.903 20 C -0.191 4.191 21 C -0.117 4.117 22 C -0.307 4.307 23 C -0.005 4.005 24 O -0.230 6.230 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.227 0.773 35 H 0.231 0.769 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.665 2.574 -20.317 20.547 hybrid contribution -0.491 0.839 -1.980 2.205 sum -2.156 3.414 -22.297 22.659 Atomic orbital electron populations 1.22061 0.98349 0.99331 1.00569 1.18531 0.92302 0.92719 0.92417 1.22050 0.99295 0.98376 1.00484 1.21787 1.35283 1.14016 0.91178 0.92926 1.25672 0.94719 0.96486 1.00990 1.70845 1.31644 1.18852 1.34652 0.83560 0.75918 0.75501 0.75358 1.21517 1.21471 1.21106 1.21457 0.97917 0.95329 0.81746 1.45477 1.55717 1.33052 1.04651 1.16033 0.80509 0.82940 0.80655 1.90885 1.43281 1.27642 1.86115 1.44967 1.57606 1.33578 1.04543 1.21153 0.99265 0.97461 0.79577 1.22805 0.79597 1.00056 0.95427 0.90347 1.22201 1.02475 1.00420 0.93968 1.20324 0.93413 0.99124 0.98857 1.22514 0.99150 1.11704 0.97352 1.22046 0.96111 0.94894 0.87411 1.85995 1.18342 1.76838 1.41837 0.90900 0.96607 0.94480 0.94461 0.96562 0.91064 0.90270 0.92780 0.92778 0.77324 0.76934 0.89851 0.90870 0.89669 0.90173 0.90502 0.91165 0.86255 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 7.88 37.16 0.29 -2.98 16 2 C 0.04 0.97 0.50 -155.66 -0.08 0.89 16 3 C -0.14 -3.22 7.88 37.16 0.29 -2.93 16 4 C -0.58 -15.75 8.01 -34.44 -0.28 -16.02 16 5 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 6 C 0.03 0.68 5.10 -17.82 -0.09 0.59 16 7 N -0.92 -26.07 12.12 55.43 0.67 -25.40 16 8 Si 1.07 24.72 29.90 -169.99 -5.08 19.63 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.16 3.47 4.49 -4.04 -0.02 3.45 16 13 N -0.73 -13.43 5.04 -65.22 -0.33 -13.76 16 14 C 0.70 12.71 8.57 -86.91 -0.74 11.96 16 15 O -0.60 -13.24 16.34 5.29 0.09 -13.15 16 16 N -0.75 -10.14 5.46 -65.23 -0.36 -10.50 16 17 C 0.15 1.72 5.39 -4.05 -0.02 1.70 16 18 C 0.08 0.70 2.94 -26.47 -0.08 0.62 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -1.13 5.54 -26.35 -0.15 -1.27 16 21 C -0.08 -0.55 6.23 -27.88 -0.17 -0.72 16 22 C -0.29 -2.18 9.97 -36.06 -0.36 -2.54 16 23 C 0.06 0.49 10.88 29.10 0.32 0.81 16 24 O -0.32 -3.28 9.81 -17.11 -0.17 -3.44 16 25 H 0.07 1.81 5.20 -51.93 -0.27 1.54 16 26 H 0.01 0.30 7.05 -51.93 -0.37 -0.07 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.02 0.30 7.05 -51.93 -0.37 -0.07 16 30 H 0.07 1.75 5.25 -51.93 -0.27 1.48 16 31 H 0.28 7.70 3.56 -40.82 -0.15 7.55 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.39 6.39 6.31 -40.82 -0.26 6.13 16 35 H 0.40 4.54 8.37 -40.82 -0.34 4.20 16 36 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -31.68 339.58 -7.86 -39.54 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.72 Total: 8.41 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.08 Total: -6.44 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.01 Total: -49.66 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.08 Total: -16.59 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.68 -7.86 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838565707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds