Wall clock time and date at job start Tue Mar 31 2020 05:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 C 1.50704 * 109.47264 * 240.00100 * 2 1 3 5 5 H 1.07995 * 120.00314 * 240.00104 * 4 2 1 6 6 C 1.37882 * 119.99749 * 59.99543 * 4 2 1 7 7 N 1.31517 * 120.00081 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99982 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46966 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47426 * 119.99968 * 8 6 4 11 11 H 1.48498 * 109.47284 * 240.00566 * 8 6 4 12 12 C 1.52998 * 109.47425 * 120.00041 * 2 1 3 13 13 N 1.46500 * 109.47158 * 300.00325 * 12 2 1 14 14 C 1.34772 * 120.00259 * 180.02562 * 13 12 2 15 15 O 1.21596 * 119.99888 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00097 * 179.97438 * 14 13 12 17 17 C 1.46509 * 119.99586 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46413 * 179.97438 * 17 16 14 19 19 H 1.08996 * 109.73700 * 305.59825 * 18 17 16 20 20 C 1.53506 * 109.70481 * 185.00091 * 18 17 16 21 21 C 1.53251 * 108.16018 * 177.91233 * 20 18 17 22 22 C 1.50444 * 109.44007 * 46.82062 * 21 20 18 23 23 C 1.30684 * 122.49684 * 342.51921 * 22 21 20 24 24 O 1.35134 * 123.34482 * 0.43373 * 23 22 21 25 25 H 1.08996 * 109.47275 * 299.99613 * 1 2 3 26 26 H 1.08998 * 109.47134 * 60.00285 * 1 2 3 27 27 H 1.09005 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47278 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47057 * 300.00263 * 3 2 1 30 30 H 1.09004 * 109.46871 * 59.99806 * 3 2 1 31 31 H 0.96994 * 119.99920 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47340 * 179.97438 * 12 2 1 33 33 H 1.09000 * 109.46962 * 59.99810 * 12 2 1 34 34 H 0.97005 * 119.99632 * 359.97438 * 13 12 2 35 35 H 0.96991 * 120.00024 * 359.97438 * 16 14 13 36 36 H 1.08993 * 109.47092 * 60.00157 * 17 16 14 37 37 H 1.08999 * 109.47172 * 299.99389 * 17 16 14 38 38 H 1.09004 * 109.72115 * 297.57701 * 20 18 17 39 39 H 1.08999 * 109.72458 * 58.23988 * 20 18 17 40 40 H 1.08994 * 109.47539 * 166.80924 * 21 20 18 41 41 H 1.08997 * 109.47404 * 286.83641 * 21 20 18 42 42 H 1.08003 * 118.75067 * 162.54366 * 22 21 20 43 43 H 1.08005 * 118.33030 * 180.45325 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1455 -2.2876 -3.6039 10 1 1.1661 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8165 12 6 2.0401 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5769 -1.4794 3.7810 16 7 1.4289 0.1448 4.7699 17 6 1.7829 -0.3558 6.1005 18 6 1.1507 0.5404 7.1673 19 1 1.4398 1.5772 6.9955 20 6 1.6189 0.0965 8.5602 21 6 1.0082 1.0476 9.5950 22 6 -0.4556 1.2335 9.3018 23 6 -0.9838 0.9322 8.1451 24 8 -0.2738 0.4217 7.1147 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7093 1.1618 -3.4843 32 1 3.1301 -0.7216 1.2490 33 1 1.6767 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.8715 0.9336 4.6809 36 1 2.8668 -0.3475 6.2153 37 1 1.4131 -1.3747 6.2157 38 1 1.2833 -0.9224 8.7537 39 1 2.7066 0.1427 8.6146 40 1 1.1282 0.6249 10.5925 41 1 1.5140 2.0118 9.5454 42 1 -1.0942 1.6315 10.0766 43 1 -2.0415 1.0999 8.0053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838565711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:27 Heat of formation + Delta-G solvation = -66.019610 kcal Electronic energy + Delta-G solvation = -22257.619892 eV Core-core repulsion = 18917.089858 eV Total energy + Delta-G solvation = -3340.530035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.51439 -39.38719 -36.50439 -34.82060 -34.22900 -33.22269 -31.83895 -30.63905 -27.58643 -25.68304 -25.51112 -24.83463 -23.97855 -22.77095 -20.57564 -19.28010 -18.73256 -18.15241 -17.02438 -16.46674 -15.97825 -15.78036 -15.04816 -14.86205 -14.70007 -14.36290 -13.79627 -13.69237 -13.49731 -13.25610 -12.98657 -12.83976 -12.60552 -12.29971 -12.13693 -11.34532 -11.26495 -11.17043 -11.04632 -10.84974 -10.81935 -10.62941 -10.34655 -10.17983 -9.74934 -9.59078 -9.26951 -8.95803 -8.74509 -8.70499 -8.38664 -8.14139 -5.99328 -4.08984 2.00485 3.03694 3.14575 3.29297 3.37842 3.43147 3.69530 4.30746 4.36014 4.43072 4.57511 4.77145 4.81332 4.92785 5.04988 5.26222 5.27529 5.30721 5.47339 5.55148 5.65668 5.81182 5.99366 6.22029 6.25541 6.41132 6.54803 6.64255 6.84299 6.87356 6.95318 7.07416 7.14761 7.30795 7.34789 7.46067 7.59890 7.73213 8.05024 8.16342 8.41900 8.53071 8.91318 9.08910 9.56669 11.02170 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043122 B = 0.002871 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.169778 B = 9750.284451 C =10080.220303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.151 3.849 13 N -0.732 5.732 14 C 0.698 3.302 15 O -0.602 6.602 16 N -0.751 5.751 17 C 0.150 3.850 18 C 0.078 3.922 19 H 0.079 0.921 20 C -0.153 4.153 21 C -0.080 4.080 22 C -0.288 4.288 23 C 0.059 3.941 24 O -0.316 6.316 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.394 0.606 35 H 0.396 0.604 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.536 4.013 21.435 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.481 6.481 16 N -0.408 5.408 17 C 0.025 3.975 18 C 0.021 3.979 19 H 0.097 0.903 20 C -0.191 4.191 21 C -0.117 4.117 22 C -0.308 4.308 23 C -0.004 4.004 24 O -0.230 6.230 25 H 0.025 0.975 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.228 0.772 35 H 0.230 0.770 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.015 3.084 21.175 21.493 hybrid contribution -0.217 0.478 -0.609 0.804 sum -2.232 3.562 20.566 20.991 Atomic orbital electron populations 1.21819 0.97773 0.99182 1.00002 1.18367 0.92807 0.92765 0.90577 1.21821 0.98558 0.98389 0.99994 1.21038 1.31275 1.12041 0.89867 0.92350 1.24885 0.94903 0.94947 0.98852 1.69818 1.36841 1.22818 1.23057 0.86517 0.78620 0.79760 0.82997 1.19746 1.21096 1.21099 1.21576 0.97838 0.95431 0.82405 1.45491 1.55563 1.33048 1.04567 1.16045 0.80522 0.82936 0.80685 1.90882 1.43327 1.27732 1.86150 1.45002 1.57672 1.33586 1.04584 1.21130 0.99216 0.97538 0.79573 1.22802 0.79405 1.00106 0.95569 0.90333 1.22207 1.01998 1.00798 0.94064 1.20325 0.92968 0.99327 0.99090 1.22509 0.98154 1.11949 0.98182 1.22048 0.96478 0.94893 0.87011 1.86009 1.18963 1.75283 1.42718 0.97504 0.89677 0.95447 0.95463 0.89663 0.97542 0.93113 0.92984 0.92978 0.77176 0.77016 0.89850 0.90797 0.90184 0.89681 0.90536 0.91178 0.86286 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.34 8.01 -34.44 -0.28 -13.62 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.80 9.35 55.43 0.52 -23.28 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.55 4.96 -65.23 -0.32 -13.88 16 14 C 0.70 12.81 8.57 -86.92 -0.74 12.07 16 15 O -0.60 -13.35 16.34 5.28 0.09 -13.26 16 16 N -0.75 -10.27 5.53 -65.22 -0.36 -10.63 16 17 C 0.15 1.74 5.36 -4.03 -0.02 1.72 16 18 C 0.08 0.71 2.88 -26.47 -0.08 0.63 16 19 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 20 C -0.15 -1.15 5.54 -26.34 -0.15 -1.29 16 21 C -0.08 -0.56 6.23 -27.88 -0.17 -0.73 16 22 C -0.29 -2.21 9.97 -36.06 -0.36 -2.57 16 23 C 0.06 0.50 10.88 29.10 0.32 0.82 16 24 O -0.32 -3.33 10.02 -17.10 -0.17 -3.50 16 25 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 26 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.14 6.07 -51.92 -0.32 1.82 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.39 6.55 6.18 -40.82 -0.25 6.30 16 35 H 0.40 4.56 8.49 -40.82 -0.35 4.22 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -30.28 343.08 -8.15 -38.43 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.98 Total: 7.24 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.07 Total: -2.17 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.17 Total: -47.78 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.09 Total: -16.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -8.15 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838565711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.586 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds