Wall clock time and date at job start Tue Mar 31 2020 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00291 * 2 1 4 4 C 1.50697 * 109.47139 * 179.97438 * 3 2 1 5 5 C 1.35456 * 126.77800 * 90.00362 * 4 3 2 6 6 C 1.41374 * 103.98486 * 180.22113 * 5 4 3 7 7 C 1.50703 * 126.79790 * 179.77218 * 6 5 4 8 8 N 1.46898 * 109.47185 * 95.00395 * 7 6 5 9 9 C 1.46898 * 110.99899 * 189.99994 * 8 7 6 10 10 C 1.50696 * 109.47325 * 155.65528 * 9 8 7 11 11 H 1.08002 * 120.00122 * 2.96148 * 10 9 8 12 12 C 1.37874 * 120.00453 * 182.95842 * 10 9 8 13 13 N 1.31517 * 119.99860 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00254 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47197 * 90.00692 * 14 12 10 16 16 H 1.48502 * 109.47365 * 210.00088 * 14 12 10 17 17 H 1.48499 * 109.47343 * 330.00219 * 14 12 10 18 18 C 1.46895 * 111.00335 * 66.04545 * 8 7 6 19 19 C 1.53000 * 109.47292 * 197.43087 * 18 8 7 20 20 C 1.53007 * 109.47042 * 60.95449 * 19 18 8 21 21 C 1.52995 * 109.47311 * 180.95202 * 19 18 8 22 22 N 1.30167 * 106.39720 * 359.63369 * 6 5 4 23 23 O 1.20925 * 111.60787 * 0.38981 * 22 6 5 24 24 H 1.08998 * 109.47619 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47430 * 300.00306 * 1 2 3 26 26 H 1.09010 * 109.47094 * 59.99756 * 1 2 3 27 27 H 1.09000 * 109.47192 * 60.00093 * 3 2 1 28 28 H 1.09002 * 109.47100 * 300.00230 * 3 2 1 29 29 H 1.07998 * 128.00548 * 359.96003 * 5 4 3 30 30 H 1.09003 * 109.46796 * 215.00231 * 7 6 5 31 31 H 1.08999 * 109.47431 * 334.99959 * 7 6 5 32 32 H 1.08998 * 109.46949 * 275.65346 * 9 8 7 33 33 H 1.09002 * 109.47591 * 35.65656 * 9 8 7 34 34 H 0.97002 * 119.99899 * 179.97438 * 13 12 10 35 35 H 1.09004 * 109.46610 * 317.43048 * 18 8 7 36 36 H 1.08994 * 109.47624 * 77.42551 * 18 8 7 37 37 H 1.08997 * 109.47125 * 300.95676 * 19 18 8 38 38 H 1.08992 * 109.47251 * 59.99726 * 20 19 18 39 39 H 1.08997 * 109.46621 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.46745 * 299.99636 * 20 19 18 41 41 H 1.09000 * 109.47105 * 60.00010 * 21 19 18 42 42 H 1.09002 * 109.47222 * 180.02562 * 21 19 18 43 43 H 1.09006 * 109.47191 * 300.00231 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.3214 1.1222 -1.0840 6 6 5.6200 1.0140 -0.5357 7 6 6.9154 0.9042 -1.2980 8 7 7.5126 2.2384 -1.4435 9 6 8.6459 2.2089 -2.3776 10 6 8.8503 3.5823 -2.9631 11 1 8.2340 4.4064 -2.6351 12 6 9.8240 3.7870 -3.9175 13 7 10.5742 2.7835 -4.3173 14 14 10.0768 5.4894 -4.6438 15 1 11.0704 6.2329 -3.8283 16 1 10.5745 5.3642 -6.0373 17 1 8.7864 6.2244 -4.6432 18 6 7.9193 2.7782 -0.1392 19 6 8.1234 4.2902 -0.2543 20 6 6.8082 4.9522 -0.6704 21 6 8.5700 4.8489 1.0982 22 7 5.4754 1.0310 0.7578 23 8 4.3120 1.1232 1.0746 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.0392 1.1439 -2.1262 30 1 7.6028 0.2557 -0.7547 31 1 6.7219 0.4832 -2.2846 32 1 9.5470 1.9028 -1.8460 33 1 8.4381 1.4996 -3.1788 34 1 11.2590 2.9275 -4.9891 35 1 7.1431 2.5714 0.5976 36 1 8.8517 2.3085 0.1737 37 1 8.8875 4.4977 -1.0033 38 1 6.0441 4.7447 0.0786 39 1 6.9538 6.0293 -0.7527 40 1 6.4901 4.5542 -1.6340 41 1 9.5069 4.3773 1.3947 42 1 8.7149 5.9261 1.0164 43 1 7.8058 4.6414 1.8473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838783092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:54 Heat of formation + Delta-G solvation = 18.969933 kcal Electronic energy + Delta-G solvation = -22836.027319 eV Core-core repulsion = 19499.182707 eV Total energy + Delta-G solvation = -3336.844612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.70995 -38.19447 -37.65741 -34.53436 -33.26980 -32.65350 -32.02382 -27.91619 -27.79267 -26.51205 -26.42559 -25.71352 -24.05835 -22.69725 -21.14146 -19.73067 -19.01063 -17.60326 -17.30766 -16.42910 -16.34444 -16.08927 -15.43105 -15.09351 -14.63771 -14.09190 -13.93371 -13.64179 -13.38546 -13.06439 -12.62788 -12.51499 -12.25141 -12.04701 -11.79524 -11.71669 -11.64765 -11.27904 -11.05500 -10.98338 -10.74531 -10.49386 -10.19378 -10.16619 -10.06836 -9.96629 -9.77707 -9.38917 -9.33107 -9.05928 -8.37914 -7.29618 -6.01277 -4.00138 1.49169 2.47062 3.03539 3.32008 3.38800 3.42545 3.81182 4.40689 4.48406 4.52214 4.82922 4.96965 5.02306 5.04329 5.08974 5.30003 5.33331 5.34942 5.53952 5.65848 5.71146 5.75279 5.96651 6.02854 6.07505 6.16037 6.28315 6.33577 6.40404 6.46380 6.57188 6.71341 6.71893 6.83199 7.15397 7.21159 7.29843 7.42536 7.86304 8.09339 8.19073 8.49908 8.52812 9.06597 9.61927 11.09283 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.004065 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.598774 B = 6885.920731 C = 7263.622833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.149 3.851 4 C -0.055 4.055 5 C -0.183 4.183 6 C 0.042 3.958 7 C 0.127 3.873 8 N -0.527 5.527 9 C 0.193 3.807 10 C -0.503 4.503 11 H 0.078 0.922 12 C 0.054 3.946 13 N -0.899 5.899 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.272 1.272 18 C 0.070 3.930 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.143 4.143 22 N -0.358 5.358 23 O 0.102 5.898 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.172 0.828 30 H 0.041 0.959 31 H 0.093 0.907 32 H -0.006 1.006 33 H 0.029 0.971 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.111 0.889 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 -2.257 8.105 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.071 3.929 4 C -0.119 4.119 5 C -0.205 4.205 6 C -0.116 4.116 7 C -0.002 4.002 8 N -0.252 5.252 9 C 0.068 3.932 10 C -0.541 4.541 11 H 0.096 0.904 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.720 3.280 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.058 4.058 19 C -0.124 4.124 20 C -0.184 4.184 21 C -0.201 4.201 22 N -0.062 5.062 23 O 0.034 5.966 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.012 0.988 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.209 -2.234 8.798 18.578 hybrid contribution 0.340 0.543 -0.902 1.107 sum -15.869 -1.690 7.896 17.806 Atomic orbital electron populations 1.22791 0.80166 1.03209 1.00313 1.87980 1.20171 1.26810 1.95523 1.20574 0.83950 0.85680 1.02667 1.23787 0.94536 1.06752 0.86818 1.22448 0.91470 1.05736 1.00818 1.23662 0.97688 1.00897 0.89393 1.20441 0.88548 0.93158 0.98011 1.62134 1.34278 1.18390 1.10438 1.19823 0.85175 0.98289 0.89882 1.21393 1.16879 0.94966 1.20860 0.90392 1.25001 0.96171 0.96843 0.96699 1.69961 1.21828 1.30699 1.31448 0.86581 0.78476 0.84567 0.78353 1.20772 1.21373 1.19700 1.22062 0.97666 0.95395 0.90674 1.21420 0.99767 0.93913 0.97256 1.21631 0.96529 0.98363 1.01918 1.21829 1.00276 1.00194 0.97819 1.73833 0.96528 1.18924 1.16895 1.84797 1.11743 1.67122 1.32974 0.89263 0.93691 0.93642 0.90942 0.89722 0.81094 0.94141 0.88881 0.98784 0.95278 0.93020 0.92338 0.96049 0.87098 0.95100 0.94598 0.90791 0.93416 0.93285 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -4.05 10.69 -35.23 -0.38 -4.42 16 3 C 0.15 1.40 6.50 36.00 0.23 1.64 16 4 C -0.06 -0.74 7.12 -35.30 -0.25 -0.99 16 5 C -0.18 -2.67 11.06 -39.38 -0.44 -3.10 16 6 C 0.04 0.73 6.12 -82.10 -0.50 0.23 16 7 C 0.13 2.38 5.52 -4.98 -0.03 2.35 16 8 N -0.53 -11.22 3.70 -237.52 -0.88 -12.10 16 9 C 0.19 4.85 4.79 -4.98 -0.02 4.83 16 10 C -0.50 -13.43 7.24 -34.44 -0.25 -13.68 16 11 H 0.08 2.03 4.58 -52.49 -0.24 1.79 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.07 1.44 4.27 -3.83 -0.02 1.42 16 19 C -0.11 -2.07 2.40 -90.62 -0.22 -2.29 16 20 C -0.13 -2.37 8.40 37.16 0.31 -2.06 16 21 C -0.14 -2.41 9.19 37.15 0.34 -2.06 16 22 N -0.36 -6.30 10.69 33.42 0.36 -5.94 16 23 O 0.10 1.59 11.20 17.18 0.19 1.79 16 24 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.09 1.64 7.80 -51.93 -0.41 1.23 16 32 H -0.01 -0.15 7.67 -51.93 -0.40 -0.55 16 33 H 0.03 0.77 7.65 -51.93 -0.40 0.38 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.16 5.86 -51.93 -0.30 0.86 16 36 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 37 H 0.11 2.53 5.14 -51.93 -0.27 2.27 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.52 6.74 -51.93 -0.35 1.17 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -30.45 348.57 -6.53 -36.98 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.97 Total: -1.32 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 0.18 Total: -11.02 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.22 Total: -43.50 kcal Atomic # 8 Polarization: -2.46 SS G_CDS: -0.18 Total: -2.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.45 -6.53 -36.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838783092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.946 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds